CHAF1B (chromatin assembly factor 1 subunit B) - Rat Genome Database

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Gene: CHAF1B (chromatin assembly factor 1 subunit B) Canis lupus familiaris
Analyze
Symbol: CHAF1B
Name: chromatin assembly factor 1 subunit B
RGD ID: 12143446
Description: INVOLVED IN DNA replication-dependent chromatin assembly (inferred); nucleosome assembly (inferred); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Developmental Disabilities (ortholog); FOUND IN chromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13131,599,840 - 31,620,436 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3131,600,448 - 31,619,784 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3130,661,315 - 30,681,936 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03130,902,480 - 30,923,086 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3130,902,540 - 30,923,076 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13130,768,724 - 30,789,563 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03130,782,423 - 30,803,066 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03131,273,564 - 31,294,221 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CHAF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13131,599,840 - 31,620,436 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3131,600,448 - 31,619,784 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3130,661,315 - 30,681,936 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03130,902,480 - 30,923,086 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3130,902,540 - 30,923,076 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13130,768,724 - 30,789,563 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03130,782,423 - 30,803,066 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03131,273,564 - 31,294,221 (+)NCBIUU_Cfam_GSD_1.0
CHAF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382136,385,392 - 36,419,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2136,385,392 - 36,419,015 (+)EnsemblGRCh38hg38GRCh38
GRCh372137,757,690 - 37,791,313 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362136,679,559 - 36,710,995 (+)NCBINCBI36Build 36hg18NCBI36
Build 342136,679,558 - 36,710,994NCBI
Celera2122,956,076 - 22,987,501 (+)NCBICelera
Cytogenetic Map21q22.12-q22.13NCBI
HuRef2123,233,429 - 23,264,863 (+)NCBIHuRef
CHM1_12137,319,551 - 37,350,873 (+)NCBICHM1_1
T2T-CHM13v2.02134,767,975 - 34,801,594 (+)NCBIT2T-CHM13v2.0
Chaf1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391693,680,801 - 93,703,003 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1693,680,789 - 93,703,003 (+)EnsemblGRCm39 Ensembl
GRCm381693,883,900 - 93,906,115 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1693,883,901 - 93,906,115 (+)EnsemblGRCm38mm10GRCm38
MGSCv371693,884,146 - 93,906,351 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361693,772,441 - 93,794,646 (+)NCBIMGSCv36mm8
Celera1694,972,620 - 94,994,875 (+)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1654.96NCBI
Chaf1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81146,670,560 - 46,690,739 (+)NCBIGRCr8
mRatBN7.21133,200,894 - 33,221,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,200,981 - 33,221,070 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,855,494 - 41,875,617 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,526,850 - 34,546,973 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01133,676,813 - 33,696,953 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01134,101,248 - 34,121,371 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1134,101,197 - 34,121,378 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01137,690,476 - 37,710,591 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41134,110,848 - 34,130,928 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11134,167,090 - 34,187,170 (+)NCBI
Celera1135,223,726 - 35,243,858 (-)NCBICelera
Cytogenetic Map11q11NCBI
Chaf1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540735,602,819 - 35,617,917 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540735,601,992 - 35,618,287 (+)NCBIChiLan1.0ChiLan1.0
CHAF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22232,506,196 - 32,537,434 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12127,366,151 - 27,397,330 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02122,755,721 - 22,786,958 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12136,113,971 - 36,143,575 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2136,113,971 - 36,143,575 (+)Ensemblpanpan1.1panPan2
Chaf1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497131,178,964 - 31,205,595 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365006,262,229 - 6,288,839 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365006,262,207 - 6,288,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHAF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13200,048,149 - 200,072,556 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113200,048,096 - 200,074,902 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213210,075,142 - 210,099,935 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHAF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1280,379,637 - 80,409,626 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl280,380,425 - 80,409,687 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660548,220,489 - 8,249,863 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chaf1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474527,095,361 - 27,117,669 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474527,094,302 - 27,117,957 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CHAF1B
343 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000015369   ⟹   ENSCAFP00000014222
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3131,600,448 - 31,619,784 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845048606   ⟹   ENSCAFP00845038127
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3130,902,540 - 30,923,076 (+)Ensembl
RefSeq Acc Id: XM_005638900   ⟹   XP_005638957
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13131,599,842 - 31,620,436 (+)NCBI
Dog10K_Boxer_Tasha3130,661,341 - 30,681,936 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038443464   ⟹   XP_038299392
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03130,902,480 - 30,923,086 (+)NCBI
RefSeq Acc Id: XM_038443465   ⟹   XP_038299393
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03130,902,506 - 30,923,086 (+)NCBI
RefSeq Acc Id: XM_038517878   ⟹   XP_038373806
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13130,768,724 - 30,789,563 (+)NCBI
RefSeq Acc Id: XM_038517879   ⟹   XP_038373807
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13130,768,750 - 30,789,563 (+)NCBI
RefSeq Acc Id: XM_038581451   ⟹   XP_038437379
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03131,273,564 - 31,294,221 (+)NCBI
RefSeq Acc Id: XM_038581452   ⟹   XP_038437380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03131,273,590 - 31,294,221 (+)NCBI
RefSeq Acc Id: XM_038645827   ⟹   XP_038501755
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03130,782,423 - 30,803,066 (+)NCBI
RefSeq Acc Id: XM_038645828   ⟹   XP_038501756
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03130,782,449 - 30,803,066 (+)NCBI
RefSeq Acc Id: XM_544875   ⟹   XP_544875
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13131,599,840 - 31,620,436 (+)NCBI
Dog10K_Boxer_Tasha3130,661,315 - 30,681,936 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005638957   ⟸   XM_005638900
- UniProtKB: A0A8P0NBR1 (UniProtKB/TrEMBL),   A0A8P0PJ55 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_544875   ⟸   XM_544875
- UniProtKB: A0A8P0NBR1 (UniProtKB/TrEMBL),   A0A8P0PJ55 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000014222   ⟸   ENSCAFT00000015369
RefSeq Acc Id: XP_038373806   ⟸   XM_038517878
RefSeq Acc Id: XP_038373807   ⟸   XM_038517879
RefSeq Acc Id: XP_038501755   ⟸   XM_038645827
RefSeq Acc Id: XP_038501756   ⟸   XM_038645828
RefSeq Acc Id: XP_038299392   ⟸   XM_038443464
- UniProtKB: A0A8C0PQN4 (UniProtKB/TrEMBL),   A0A8C0LK46 (UniProtKB/TrEMBL),   A0A8I3SAW2 (UniProtKB/TrEMBL),   A0A8C0LIA8 (UniProtKB/TrEMBL),   A0A8C0Z2P2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299393   ⟸   XM_038443465
- UniProtKB: A0A8C0PQN4 (UniProtKB/TrEMBL),   A0A8C0LK46 (UniProtKB/TrEMBL),   A0A8I3SAW2 (UniProtKB/TrEMBL),   A0A8C0LIA8 (UniProtKB/TrEMBL),   A0A8C0Z2P2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437379   ⟸   XM_038581451
- UniProtKB: A0A8C0LIA8 (UniProtKB/TrEMBL),   A0A8C0LK46 (UniProtKB/TrEMBL),   A0A8C0PQN4 (UniProtKB/TrEMBL),   A0A8C0Z2P2 (UniProtKB/TrEMBL),   A0A8I3SAW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437380   ⟸   XM_038581452
- UniProtKB: A0A8C0LIA8 (UniProtKB/TrEMBL),   A0A8C0LK46 (UniProtKB/TrEMBL),   A0A8C0PQN4 (UniProtKB/TrEMBL),   A0A8C0Z2P2 (UniProtKB/TrEMBL),   A0A8I3SAW2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845038127   ⟸   ENSCAFT00845048606
Promoters
RGD ID:13688635
Promoter ID:EPDNEW_C6704
Type:initiation region
Name:CHAF1B_1
Description:chromatin assembly factor 1 subunit B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13131,599,842 - 31,599,902EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009674 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025824 UniProtKB/TrEMBL
  ENSCAFG00040020155 UniProtKB/TrEMBL
  ENSCAFG00845027567 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015369.5 UniProtKB/TrEMBL
  ENSCAFT00000097843.1 UniProtKB/TrEMBL
  ENSCAFT00030047672.1 UniProtKB/TrEMBL
  ENSCAFT00040037248.1 UniProtKB/TrEMBL
  ENSCAFT00040037312.1 UniProtKB/TrEMBL
  ENSCAFT00845048606 ENTREZGENE
  ENSCAFT00845048606.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro CAF1_p60_C UniProtKB/TrEMBL
  Gprotein_B UniProtKB/TrEMBL
  PTHR15271 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report cfa:487750 UniProtKB/TrEMBL
NCBI Gene CHAF1B ENTREZGENE
PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B UniProtKB/TrEMBL
  PTHR15271 UniProtKB/TrEMBL
Pfam CAF-1_p60_C UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINB UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C0LIA8 ENTREZGENE
  A0A8C0LK46 ENTREZGENE
  A0A8C0PQN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z2P2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3SAW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NBR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PJ55 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:39190 ENTREZGENE