Symbol:
PFDN6
Name:
prefoldin subunit 6
RGD ID:
12132212
Description:
ENCODES a protein that exhibits amyloid-beta binding (ortholog); INVOLVED IN negative regulation of amyloid fibril formation (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); MHC class I deficiency (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN RPAP3/R2TP/prefoldin-like complex (ortholog)
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
protein Ke2
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Related Pseudogenes:
LOC609675
Latest Assembly:
CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 12 2,729,562 - 2,730,858 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 12 2,729,562 - 2,737,163 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 12 2,810,481 - 2,811,777 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 12 3,060,976 - 3,062,272 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 12 3,060,976 - 3,068,578 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 12 2,728,205 - 2,729,498 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 12 2,809,691 - 2,810,986 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 12 2,884,403 - 2,885,699 (+) NCBI UU_Cfam_GSD_1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
PFDN6 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 12 2,729,562 - 2,730,858 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 12 2,729,562 - 2,737,163 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 12 2,810,481 - 2,811,777 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 12 3,060,976 - 3,062,272 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 12 3,060,976 - 3,068,578 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 12 2,728,205 - 2,729,498 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 12 2,809,691 - 2,810,986 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 12 2,884,403 - 2,885,699 (+) NCBI UU_Cfam_GSD_1.0
PFDN6 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 33,289,197 - 33,290,934 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 33,289,302 - 33,298,401 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 6 33,257,374 - 33,258,711 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 6 33,365,356 - 33,366,689 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 6 33,365,355 - 33,366,689 NCBI Celera 6 34,811,736 - 34,813,069 (+) NCBI Celera Cytogenetic Map 6 p21.32 NCBI HuRef 6 32,999,008 - 33,000,345 (+) NCBI HuRef CHM1_1 6 33,259,314 - 33,260,651 (+) NCBI CHM1_1 T2T-CHM13v2.0 6 33,110,554 - 33,112,296 (+) NCBI T2T-CHM13v2.0
Pfdn6 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 17 34,157,883 - 34,159,317 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 17 34,157,795 - 34,159,317 (-) Ensembl GRCm39 Ensembl GRCm38 17 33,938,909 - 33,940,343 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 17 33,938,821 - 33,940,343 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 17 34,075,854 - 34,077,288 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 17 33,549,377 - 33,550,759 (-) NCBI MGSCv36 mm8 Celera 17 36,691,821 - 36,693,255 (-) NCBI Celera Cytogenetic Map 17 B1 NCBI cM Map 17 17.98 NCBI
Pfdn6 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 20 4,947,844 - 4,949,318 (+) NCBI GRCr8 mRatBN7.2 20 4,945,959 - 4,947,433 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 20 4,945,959 - 4,947,433 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 20 5,669,442 - 5,670,913 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 20 5,031,187 - 5,032,658 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 20 5,511,980 - 5,513,454 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 20 5,455,974 - 5,457,448 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 20 5,455,974 - 5,457,444 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 20 7,514,586 - 7,516,060 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 20 5,097,725 - 5,099,199 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 20 5,097,988 - 5,099,417 (+) NCBI Celera 20 6,530,176 - 6,531,651 (+) NCBI Celera Cytogenetic Map 20 p12 NCBI
Pfdn6 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955437 1,848,571 - 1,849,824 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955437 1,848,571 - 1,849,824 (+) NCBI ChiLan1.0 ChiLan1.0
PFDN6 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 5 47,767,049 - 47,768,838 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 6 43,638,721 - 43,640,506 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 6 32,861,793 - 32,863,234 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 6 33,975,889 - 33,977,304 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 6 33,975,992 - 33,983,245 (+) Ensembl panpan1.1 panPan2
Pfdn6 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404946 38,383,438 - 38,384,733 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936476 25,575,534 - 25,576,818 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936476 25,575,534 - 25,576,827 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
PFDN6 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 7 29,653,679 - 29,654,945 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 7 29,653,569 - 29,654,957 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 7 34,157,268 - 34,158,709 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
PFDN6 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 17 38,786,556 - 38,787,913 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 17 38,786,045 - 38,787,613 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666044 33,124,206 - 33,125,566 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Pfdn6 (Heterocephalus glaber - naked mole-rat)
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
6
5
5
23
22
16
6
6
6
6
33
22
12
14
10
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSCAFT00845037384 ⟹ ENSCAFP00845029285
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 12 3,060,976 - 3,068,578 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845037435 ⟹ ENSCAFP00845029325
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 12 3,060,976 - 3,062,272 (+) Ensembl
RefSeq Acc Id:
NM_001048089 ⟹ NP_001041554
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 12 2,729,562 - 2,730,858 (+) NCBI Dog10K_Boxer_Tasha 12 2,810,481 - 2,811,777 (+) NCBI ROS_Cfam_1.0 12 3,060,976 - 3,062,272 (+) NCBI UMICH_Zoey_3.1 12 2,728,205 - 2,729,498 (+) NCBI UNSW_CanFamBas_1.0 12 2,809,691 - 2,810,986 (+) NCBI UU_Cfam_GSD_1.0 12 2,884,403 - 2,885,699 (+) NCBI
Sequence:
TTCTTTGTTTACTTCCAGGTTTAGTAATAGTGAAGCGAGAACGCCGGGCCAGAAAGGGGAGTTTAGGTACCTCCCAGAGTGAGACCCAGCGCCCGCTCCCACTCCCCGCGGGCCTTCGTCCCCGCCAT GGCTGAGCTAATCCAGAAGAAGCTACAGGGAGAAGTGGAGAAATATCAGCAGCTACAGAAGGACTTGAGTAAATCCATGTCGGGGAGACAGAAGCTTGAGGCGCAGCTAACAGAAAATAATATCGTGA AGGAGGAGCTGGCCCTGCTAGATGGATCCAACGTGGTCTTTAAACTTCTGGGTCCTGTGCTGGTCAAACAGGAGCTGGGAGAGGCTCGTGCCACAGTGGGGAAGAGGCTGGACTATATCACAGCTGAA ATTAAGCGATACGAATCCCAGCTCCGGGACCTTGAGCGGCAGTCAGAGCAACAGAGGGAGACCCTGGCTCAGCTGCAGCAGGAGTTCCAGAGGGCCCAGGCAGCCAAGGCAGGGGCTTCTGGGAAGGC CTGACCCCATGGGGGGGGGAGGGAATGAGGCAGCTCAAGGGTCTATGCTGTAGCTAATAAAATGTGAAAACCCCTGGCTGTTTTCTGACCAGCCACTTCCTGTCA
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RefSeq Acc Id:
NP_001041554 ⟸ NM_001048089
- UniProtKB:
Q5TJE6 (UniProtKB/Swiss-Prot), A0A8C0QUM0 (UniProtKB/TrEMBL)
- Sequence:
MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGASGK A
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Ensembl Acc Id:
ENSCAFP00845029285 ⟸ ENSCAFT00845037384
Ensembl Acc Id:
ENSCAFP00845029325 ⟸ ENSCAFT00845037435
RGD ID: 13685379
Promoter ID: EPDNEW_C3448
Type: multiple initiation site
Name: PFDN6_1
Description: prefoldin subunit 6
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Dog Assembly Chr Position (strand) Source CanFam3.1 12 2,729,584 - 2,729,644 EPDNEW