Pfdn6 (prefoldin subunit 6) - Rat Genome Database

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Gene: Pfdn6 (prefoldin subunit 6) Chinchilla lanigera
Analyze
Symbol: Pfdn6
Name: prefoldin subunit 6
RGD ID: 9007595
Description: ENCODES a protein that exhibits amyloid-beta binding (ortholog); protein-folding chaperone binding (ortholog); unfolded protein binding (ortholog); INVOLVED IN chaperone-mediated protein complex assembly (ortholog); negative regulation of amyloid fibril formation (ortholog); protein folding (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); genetic disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN prefoldin complex (ortholog); RPAP3/R2TP/prefoldin-like complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,848,571 - 1,849,824 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,848,571 - 1,849,824 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pfdn6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,848,571 - 1,849,824 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,848,571 - 1,849,824 (+)NCBIChiLan1.0ChiLan1.0
PFDN6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,289,197 - 33,290,934 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,289,302 - 33,298,401 (+)EnsemblGRCh38hg38GRCh38
GRCh37633,257,374 - 33,258,711 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,365,356 - 33,366,689 (+)NCBINCBI36Build 36hg18NCBI36
Build 34633,365,355 - 33,366,689NCBI
Celera634,811,736 - 34,813,069 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,999,008 - 33,000,345 (+)NCBIHuRef
CHM1_1633,259,314 - 33,260,651 (+)NCBICHM1_1
T2T-CHM13v2.0633,110,554 - 33,112,296 (+)NCBIT2T-CHM13v2.0
Pfdn6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,157,883 - 34,159,317 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,157,795 - 34,159,317 (-)EnsemblGRCm39 Ensembl
GRCm381733,938,909 - 33,940,343 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,938,821 - 33,940,343 (-)EnsemblGRCm38mm10GRCm38
MGSCv371734,075,854 - 34,077,288 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,549,377 - 33,550,759 (-)NCBIMGSCv36mm8
Celera1736,691,821 - 36,693,255 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Pfdn6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,947,844 - 4,949,318 (+)NCBIGRCr8
mRatBN7.2204,945,959 - 4,947,433 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,945,959 - 4,947,433 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,669,442 - 5,670,913 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,031,187 - 5,032,658 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,511,980 - 5,513,454 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,455,974 - 5,457,448 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,455,974 - 5,457,444 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,514,586 - 7,516,060 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,097,725 - 5,099,199 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,097,988 - 5,099,417 (+)NCBI
Celera206,530,176 - 6,531,651 (+)NCBICelera
Cytogenetic Map20p12NCBI
PFDN6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,767,049 - 47,768,838 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,638,721 - 43,640,506 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,861,793 - 32,863,234 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1633,975,889 - 33,977,304 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,975,992 - 33,983,245 (+)Ensemblpanpan1.1panPan2
PFDN6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,729,562 - 2,730,858 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,729,562 - 2,737,163 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,810,481 - 2,811,777 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0123,060,976 - 3,062,272 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl123,060,976 - 3,068,578 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,728,205 - 2,729,498 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,809,691 - 2,810,986 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,884,403 - 2,885,699 (+)NCBIUU_Cfam_GSD_1.0
Pfdn6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,383,438 - 38,384,733 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,575,534 - 25,576,818 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,575,534 - 25,576,827 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PFDN6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,653,679 - 29,654,945 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1729,653,569 - 29,654,957 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,157,268 - 34,158,709 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PFDN6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,786,556 - 38,787,913 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,786,045 - 38,787,613 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604433,124,206 - 33,125,566 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pfdn6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,531,016 - 23,532,388 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,531,016 - 23,532,350 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015370   ⟹   ENSCLAP00000015210
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554371,848,571 - 1,849,824 (+)Ensembl
RefSeq Acc Id: XM_005389483   ⟹   XP_005389540
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554371,848,571 - 1,849,824 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389540 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015210
  ENSCLAP00000015210.1
Reference Protein Sequences
RefSeq Acc Id: XP_005389540   ⟸   XM_005389483
- UniProtKB: A0A8C2VK96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015210   ⟸   ENSCLAT00000015370


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010475 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015370 ENTREZGENE
  ENSCLAT00000015370.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.370 UniProtKB/TrEMBL
InterPro PFD_beta-like UniProtKB/TrEMBL
  Prefoldin UniProtKB/TrEMBL
NCBI Gene Pfdn6 ENTREZGENE
PANTHER PREFOLDIN SUBUNIT 6 UniProtKB/TrEMBL
  PREFOLDIN SUBUNIT 6 UniProtKB/TrEMBL
Pfam Prefoldin_2 UniProtKB/TrEMBL
Superfamily-SCOP Prefoldin UniProtKB/TrEMBL
UniProt A0A8C2VK96 ENTREZGENE, UniProtKB/TrEMBL