LOC100686518 (cationic amino acid transporter 3-like) - Rat Genome Database

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Gene: LOC100686518 (cationic amino acid transporter 3-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC100686518
Name: cationic amino acid transporter 3-like
RGD ID: 12124263
Description: ENCODES a protein that exhibits L-lysine transmembrane transporter activity (inferred); L-ornithine transmembrane transporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN amino acid transport (inferred); L-arginine import across plasma membrane (inferred); L-lysine transmembrane transport (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cationic amino acid transporter 3 pseudogene; LOC100686673
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12725,924,244 - 25,942,863 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2720,378,220 - 20,394,423 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02726,298,130 - 26,323,457 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12726,166,368 - 26,191,415 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02726,136,769 - 26,161,852 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02720,160,681 - 20,185,744 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100686518
801 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014108401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_038438808   ⟹   XP_038294736
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02726,302,747 - 26,323,457 (+)NCBI
RefSeq Acc Id: XM_038438809   ⟹   XP_038294737
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02726,298,130 - 26,323,457 (+)NCBI
RefSeq Acc Id: XM_038438810   ⟹   XP_038294738
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02726,298,130 - 26,323,457 (+)NCBI
RefSeq Acc Id: XM_038438811   ⟹   XP_038294739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02726,302,747 - 26,323,457 (+)NCBI
RefSeq Acc Id: XM_038438812   ⟹   XP_038294740
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02726,302,927 - 26,323,457 (+)NCBI
RefSeq Acc Id: XM_038438813   ⟹   XP_038294741
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02726,320,524 - 26,323,457 (+)NCBI
RefSeq Acc Id: XM_038459507   ⟹   XP_038315435
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2720,379,131 - 20,381,173 (-)NCBI
RefSeq Acc Id: XM_038459508   ⟹   XP_038315436
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2720,379,131 - 20,394,233 (-)NCBI
RefSeq Acc Id: XM_038459509   ⟹   XP_038315437
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2720,379,131 - 20,386,061 (-)NCBI
RefSeq Acc Id: XM_038459510   ⟹   XP_038315438
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2720,378,220 - 20,394,423 (-)NCBI
RefSeq Acc Id: XM_038513478   ⟹   XP_038369406
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12726,170,930 - 26,191,415 (+)NCBI
RefSeq Acc Id: XM_038513479   ⟹   XP_038369407
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12726,166,368 - 26,191,415 (+)NCBI
RefSeq Acc Id: XM_038513480   ⟹   XP_038369408
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12726,170,930 - 26,191,415 (+)NCBI
RefSeq Acc Id: XM_038513481   ⟹   XP_038369409
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12726,166,368 - 26,191,415 (+)NCBI
RefSeq Acc Id: XM_038513482   ⟹   XP_038369410
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12726,170,930 - 26,191,415 (+)NCBI
RefSeq Acc Id: XM_038576996   ⟹   XP_038432924
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02720,160,681 - 20,181,184 (-)NCBI
RefSeq Acc Id: XM_038576997   ⟹   XP_038432925
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02720,160,681 - 20,185,744 (-)NCBI
RefSeq Acc Id: XM_038576998   ⟹   XP_038432926
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02720,160,681 - 20,181,184 (-)NCBI
RefSeq Acc Id: XM_038576999   ⟹   XP_038432927
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02720,160,681 - 20,185,744 (-)NCBI
RefSeq Acc Id: XM_038577000   ⟹   XP_038432928
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02720,160,681 - 20,181,184 (-)NCBI
RefSeq Acc Id: XM_038577001   ⟹   XP_038432929
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02720,160,681 - 20,180,996 (-)NCBI
RefSeq Acc Id: XM_038641279   ⟹   XP_038497207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02726,141,351 - 26,161,852 (+)NCBI
RefSeq Acc Id: XM_038641280   ⟹   XP_038497208
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02726,136,769 - 26,161,852 (+)NCBI
RefSeq Acc Id: XM_038641281   ⟹   XP_038497209
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02726,141,351 - 26,161,852 (+)NCBI
RefSeq Acc Id: XM_038641282   ⟹   XP_038497210
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02726,136,769 - 26,161,852 (+)NCBI
RefSeq Acc Id: XM_038641283   ⟹   XP_038497211
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02726,141,351 - 26,161,852 (+)NCBI
RefSeq Acc Id: XM_038641284   ⟹   XP_038497212
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02726,141,351 - 26,161,852 (+)NCBI
RefSeq Acc Id: XM_038641285   ⟹   XP_038497213
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02726,141,529 - 26,161,852 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038294736 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294737 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294738 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294739 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294740 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294741 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315435 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315436 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315437 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315438 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369406 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369408 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369409 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369410 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432924 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432925 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432926 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432927 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432928 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432929 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497208 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497209 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497211 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497212 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497213 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000041399.3
  ENSCAFP00040040579.1
  ENSCAFP00845021193
  ENSCAFP00845021193.1
Reference Protein Sequences
RefSeq Acc Id: XP_038369407   ⟸   XM_038513479
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038369409   ⟸   XM_038513481
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038369408   ⟸   XM_038513480
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038369410   ⟸   XM_038513482
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038369406   ⟸   XM_038513478
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497208   ⟸   XM_038641280
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497210   ⟸   XM_038641282
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497211   ⟸   XM_038641283
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497212   ⟸   XM_038641284
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497209   ⟸   XM_038641281
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497207   ⟸   XM_038641279
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497213   ⟸   XM_038641285
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038294737   ⟸   XM_038438809
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NK64 (UniProtKB/TrEMBL),   A0A8C0TUL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294738   ⟸   XM_038438810
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NK64 (UniProtKB/TrEMBL),   A0A8C0TUL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294739   ⟸   XM_038438811
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NK64 (UniProtKB/TrEMBL),   A0A8C0TUL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294736   ⟸   XM_038438808
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NK64 (UniProtKB/TrEMBL),   A0A8C0TUL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294740   ⟸   XM_038438812
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NK64 (UniProtKB/TrEMBL),   A0A8C0TUL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294741   ⟸   XM_038438813
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NK64 (UniProtKB/TrEMBL),   A0A8C0TUL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315438   ⟸   XM_038459510
- Peptide Label: isoform X3
- UniProtKB: A0A8P0NSA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315436   ⟸   XM_038459508
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038315437   ⟸   XM_038459509
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038315435   ⟸   XM_038459507
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038432927   ⟸   XM_038576999
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TUL9 (UniProtKB/TrEMBL),   A0A8I3NK64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432925   ⟸   XM_038576997
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TUL9 (UniProtKB/TrEMBL),   A0A8I3NK64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432924   ⟸   XM_038576996
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TUL9 (UniProtKB/TrEMBL),   A0A8I3NK64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432928   ⟸   XM_038577000
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TUL9 (UniProtKB/TrEMBL),   A0A8I3NK64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432926   ⟸   XM_038576998
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TUL9 (UniProtKB/TrEMBL),   A0A8I3NK64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432929   ⟸   XM_038577001
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TUL9 (UniProtKB/TrEMBL),   A0A8I3NK64 (UniProtKB/TrEMBL)
Protein Domains
Cationic amino acid transporter C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029531 UniProtKB/TrEMBL
  ENSCAFG00040024959 UniProtKB/TrEMBL
  ENSCAFG00845015062 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000042995.3 UniProtKB/TrEMBL
  ENSCAFT00040046497.1 UniProtKB/TrEMBL
  ENSCAFT00845026920 ENTREZGENE
  ENSCAFT00845026920.1 UniProtKB/TrEMBL
Gene3D-CATH Amino acid/polyamine transporter I UniProtKB/TrEMBL
InterPro AA/rel_permease1 UniProtKB/TrEMBL
  CAT_C UniProtKB/TrEMBL
NCBI Gene LOC100686518 ENTREZGENE
PANTHER AA_PERMEASE_C DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  INNER MEMBRANE TRANSPORTER YGJI-RELATED UniProtKB/TrEMBL
Pfam AA_permease_2 UniProtKB/TrEMBL
  AA_permease_C UniProtKB/TrEMBL
PIRSF AA_transporter UniProtKB/TrEMBL
UniProt A0A8C0TUL9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NK64 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NSA5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 LOC100686518  cationic amino acid transporter 3-like  LOC100686673  cationic amino acid transporter 3 pseudogene  Data merged from RGD:12229339 737654 PROVISIONAL
2021-01-12 LOC100686518  cationic amino acid transporter 3-like  LOC100686518  cationic amino acid transporter 3 pseudogene  Symbol and/or name change 5135510 APPROVED
2017-09-12 LOC100686673  cationic amino acid transporter 3 pseudogene    cationic amino acid transporter 3-like  Symbol and/or name change 5135510 APPROVED
2017-09-12 LOC100686518  cationic amino acid transporter 3 pseudogene    cationic amino acid transporter 3-like  Symbol and/or name change 5135510 APPROVED