GABRD (gamma-aminobutyric acid type A receptor subunit delta) - Rat Genome Database

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Gene: GABRD (gamma-aminobutyric acid type A receptor subunit delta) Canis lupus familiaris
Analyze
Symbol: GABRD
Name: gamma-aminobutyric acid type A receptor subunit delta
RGD ID: 12122468
Description: ENCODES a protein that exhibits GABA-A receptor activity (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-aminobutyric acid receptor subunit delta; gamma-aminobutyric acid type A receptor delta subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,984,786 - 56,994,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,984,913 - 56,994,358 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha557,061,831 - 57,077,443 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0557,188,326 - 57,203,524 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl557,188,279 - 57,198,308 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1557,178,812 - 57,194,421 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0557,071,329 - 57,086,939 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,461,155 - 57,476,777 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GABRD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,984,786 - 56,994,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,984,913 - 56,994,358 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha557,061,831 - 57,077,443 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0557,188,326 - 57,203,524 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl557,188,279 - 57,198,308 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1557,178,812 - 57,194,421 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0557,071,329 - 57,086,939 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,461,155 - 57,476,777 (+)NCBIUU_Cfam_GSD_1.0
GABRD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812,019,345 - 2,030,758 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12,019,329 - 2,030,758 (+)EnsemblGRCh38hg38GRCh38
GRCh3711,950,784 - 1,962,197 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,940,703 - 1,952,050 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411,983,004 - 1,994,352NCBI
Celera1630,843 - 641,887 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef11,233,788 - 1,239,603 (+)NCBIHuRef
CHM1_111,937,892 - 1,949,316 (+)NCBICHM1_1
T2T-CHM13v2.011,454,897 - 1,466,310 (+)NCBIT2T-CHM13v2.0
Gabrd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,469,437 - 155,482,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,469,437 - 155,482,569 (-)EnsemblGRCm39 Ensembl
GRCm384155,384,979 - 155,398,098 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,384,980 - 155,398,112 (-)EnsemblGRCm38mm10GRCm38
MGSCv374154,759,088 - 154,772,178 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,228,780 - 154,241,862 (-)NCBIMGSCv36mm8
Celera4157,658,925 - 157,672,022 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map486.17NCBI
Gabrd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,240,813 - 171,252,709 (-)NCBIGRCr8
mRatBN7.25165,958,508 - 165,970,407 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,958,484 - 165,970,411 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5168,663,711 - 168,675,590 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,485,123 - 170,497,002 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,447,654 - 170,459,533 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05172,797,478 - 172,809,374 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,797,450 - 172,809,353 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,255,724 - 176,267,620 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,203,064 - 172,214,960 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,213,559 - 172,225,455 (-)NCBI
Celera5164,160,929 - 164,172,825 (-)NCBICelera
Cytogenetic Map5q36NCBI
Gabrd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,035,330 - 9,039,557 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,035,330 - 9,039,553 (-)NCBIChiLan1.0ChiLan1.0
GABRD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,238,362 - 226,249,814 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,896,964 - 224,908,423 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01731,714 - 743,165 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,883,955 - 1,895,102 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,883,955 - 1,895,102 (+)Ensemblpanpan1.1panPan2
Gabrd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,059,911 - 28,065,511 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,400,395 - 1,406,119 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,400,437 - 1,405,885 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl664,049,675 - 64,059,640 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1664,049,665 - 64,059,644 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,561,062 - 58,563,060 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GABRD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,530,049 - 129,541,437 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20129,529,108 - 129,541,580 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605433,917,754 - 33,929,160 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabrd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,856,797 - 7,864,540 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248187,856,797 - 7,864,552 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GABRD
71 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005620414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005620415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005620416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014113862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038537669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038537670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038537671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038537672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038537673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038537674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038537675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_546729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005325927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005325928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005325929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005351663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005351667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005351676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005359791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005359792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005359793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005394336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005394337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005394338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005427411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005427412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005427413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000030791   ⟹   ENSCAFP00000028625
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl556,984,913 - 56,994,358 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000035570   ⟹   ENSCAFP00000030844
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl556,987,789 - 56,994,358 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845028791   ⟹   ENSCAFP00845022657
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl557,188,279 - 57,198,308 (+)Ensembl
RefSeq Acc Id: XM_005620414   ⟹   XP_005620471
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1556,984,787 - 56,994,790 (+)NCBI
Dog10K_Boxer_Tasha557,061,831 - 57,071,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005620415   ⟹   XP_005620472
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1556,984,786 - 56,994,790 (+)NCBI
Dog10K_Boxer_Tasha557,061,831 - 57,071,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005620416   ⟹   XP_005620473
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1556,989,930 - 56,994,790 (+)NCBI
Dog10K_Boxer_Tasha557,066,929 - 57,071,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014113862   ⟹   XP_013969337
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1556,985,476 - 56,994,790 (+)NCBI
Dog10K_Boxer_Tasha557,062,460 - 57,071,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038476525   ⟹   XP_038332453
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1557,178,812 - 57,188,783 (+)NCBI
RefSeq Acc Id: XM_038476526   ⟹   XP_038332454
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1557,178,812 - 57,194,414 (+)NCBI
RefSeq Acc Id: XM_038476527   ⟹   XP_038332455
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1557,178,812 - 57,188,783 (+)NCBI
RefSeq Acc Id: XM_038476528   ⟹   XP_038332456
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1557,178,812 - 57,188,783 (+)NCBI
RefSeq Acc Id: XM_038476529   ⟹   XP_038332457
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1557,179,441 - 57,188,783 (+)NCBI
RefSeq Acc Id: XM_038476530   ⟹   XP_038332458
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1557,183,910 - 57,188,783 (+)NCBI
RefSeq Acc Id: XM_038476531   ⟹   XP_038332459
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1557,183,909 - 57,188,783 (+)NCBI
RefSeq Acc Id: XM_038522285   ⟹   XP_038378213
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha557,061,831 - 57,077,436 (+)NCBI
RefSeq Acc Id: XM_038522316   ⟹   XP_038378244
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha557,066,928 - 57,071,803 (+)NCBI
RefSeq Acc Id: XM_038537669   ⟹   XP_038393597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0557,461,155 - 57,471,130 (+)NCBI
RefSeq Acc Id: XM_038537670   ⟹   XP_038393598
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0557,461,155 - 57,476,770 (+)NCBI
RefSeq Acc Id: XM_038537671   ⟹   XP_038393599
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0557,461,155 - 57,471,130 (+)NCBI
RefSeq Acc Id: XM_038537672   ⟹   XP_038393600
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0557,461,155 - 57,471,130 (+)NCBI
RefSeq Acc Id: XM_038537673   ⟹   XP_038393601
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0557,461,784 - 57,471,130 (+)NCBI
RefSeq Acc Id: XM_038537674   ⟹   XP_038393602
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0557,466,256 - 57,471,130 (+)NCBI
RefSeq Acc Id: XM_038537675   ⟹   XP_038393603
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0557,466,255 - 57,471,130 (+)NCBI
RefSeq Acc Id: XM_038601833   ⟹   XP_038457761
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0557,071,329 - 57,081,302 (+)NCBI
RefSeq Acc Id: XM_038601834   ⟹   XP_038457762
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0557,071,329 - 57,086,932 (+)NCBI
RefSeq Acc Id: XM_038601835   ⟹   XP_038457763
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0557,071,329 - 57,081,302 (+)NCBI
RefSeq Acc Id: XM_038601836   ⟹   XP_038457764
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0557,071,329 - 57,081,302 (+)NCBI
RefSeq Acc Id: XM_038601837   ⟹   XP_038457765
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0557,071,958 - 57,081,302 (+)NCBI
RefSeq Acc Id: XM_038601838   ⟹   XP_038457766
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0557,076,428 - 57,081,302 (+)NCBI
RefSeq Acc Id: XM_038601839   ⟹   XP_038457767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0557,076,427 - 57,081,302 (+)NCBI
RefSeq Acc Id: XM_038666407   ⟹   XP_038522335
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0557,188,326 - 57,198,302 (+)NCBI
RefSeq Acc Id: XM_038666408   ⟹   XP_038522336
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0557,188,326 - 57,203,517 (+)NCBI
RefSeq Acc Id: XM_038666409   ⟹   XP_038522337
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0557,188,326 - 57,198,302 (+)NCBI
RefSeq Acc Id: XM_038666410   ⟹   XP_038522338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0557,188,326 - 57,198,302 (+)NCBI
RefSeq Acc Id: XM_038666411   ⟹   XP_038522339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0557,188,955 - 57,198,302 (+)NCBI
RefSeq Acc Id: XM_038666412   ⟹   XP_038522340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0557,193,429 - 57,198,302 (+)NCBI
RefSeq Acc Id: XM_038666413   ⟹   XP_038522341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0557,193,428 - 57,198,302 (+)NCBI
RefSeq Acc Id: XM_546729   ⟹   XP_546729
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1556,984,789 - 56,994,790 (+)NCBI
Dog10K_Boxer_Tasha557,061,831 - 57,071,803 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005325927
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1557,178,812 - 57,194,417 (+)NCBI
RefSeq Acc Id: XR_005325928
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1557,178,812 - 57,194,421 (+)NCBI
RefSeq Acc Id: XR_005325929
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1557,178,812 - 57,194,418 (+)NCBI
RefSeq Acc Id: XR_005351663
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha557,061,831 - 57,077,439 (+)NCBI
RefSeq Acc Id: XR_005351667
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha557,061,831 - 57,077,443 (+)NCBI
RefSeq Acc Id: XR_005351676
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha557,061,831 - 57,077,440 (+)NCBI
RefSeq Acc Id: XR_005359791
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0557,461,155 - 57,476,773 (+)NCBI
RefSeq Acc Id: XR_005359792
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0557,461,155 - 57,476,777 (+)NCBI
RefSeq Acc Id: XR_005359793
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0557,461,155 - 57,476,774 (+)NCBI
RefSeq Acc Id: XR_005394336
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0557,071,329 - 57,086,935 (+)NCBI
RefSeq Acc Id: XR_005394337
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0557,071,329 - 57,086,939 (+)NCBI
RefSeq Acc Id: XR_005394338
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0557,071,329 - 57,086,936 (+)NCBI
RefSeq Acc Id: XR_005427411
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0557,188,326 - 57,203,521 (+)NCBI
RefSeq Acc Id: XR_005427412
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0557,188,326 - 57,203,524 (+)NCBI
RefSeq Acc Id: XR_005427413
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0557,188,326 - 57,203,521 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005620471 (Get FASTA)   NCBI Sequence Viewer  
  XP_005620472 (Get FASTA)   NCBI Sequence Viewer  
  XP_005620473 (Get FASTA)   NCBI Sequence Viewer  
  XP_013969337 (Get FASTA)   NCBI Sequence Viewer  
  XP_038332453 (Get FASTA)   NCBI Sequence Viewer  
  XP_038332454 (Get FASTA)   NCBI Sequence Viewer  
  XP_038332455 (Get FASTA)   NCBI Sequence Viewer  
  XP_038332456 (Get FASTA)   NCBI Sequence Viewer  
  XP_038332457 (Get FASTA)   NCBI Sequence Viewer  
  XP_038332458 (Get FASTA)   NCBI Sequence Viewer  
  XP_038332459 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378213 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378244 (Get FASTA)   NCBI Sequence Viewer  
  XP_038393597 (Get FASTA)   NCBI Sequence Viewer  
  XP_038393598 (Get FASTA)   NCBI Sequence Viewer  
  XP_038393599 (Get FASTA)   NCBI Sequence Viewer  
  XP_038393600 (Get FASTA)   NCBI Sequence Viewer  
  XP_038393601 (Get FASTA)   NCBI Sequence Viewer  
  XP_038393602 (Get FASTA)   NCBI Sequence Viewer  
  XP_038393603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038457761 (Get FASTA)   NCBI Sequence Viewer  
  XP_038457762 (Get FASTA)   NCBI Sequence Viewer  
  XP_038457763 (Get FASTA)   NCBI Sequence Viewer  
  XP_038457764 (Get FASTA)   NCBI Sequence Viewer  
  XP_038457765 (Get FASTA)   NCBI Sequence Viewer  
  XP_038457766 (Get FASTA)   NCBI Sequence Viewer  
  XP_038457767 (Get FASTA)   NCBI Sequence Viewer  
  XP_038522335 (Get FASTA)   NCBI Sequence Viewer  
  XP_038522336 (Get FASTA)   NCBI Sequence Viewer  
  XP_038522337 (Get FASTA)   NCBI Sequence Viewer  
  XP_038522338 (Get FASTA)   NCBI Sequence Viewer  
  XP_038522339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038522340 (Get FASTA)   NCBI Sequence Viewer  
  XP_038522341 (Get FASTA)   NCBI Sequence Viewer  
  XP_546729 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000028625.1
  ENSCAFP00030002304.1
  ENSCAFP00040007427.1
  ENSCAFP00845022657
  ENSCAFP00845022657.1
RefSeq Acc Id: XP_005620471   ⟸   XM_005620414
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_546729   ⟸   XM_546729
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RA95 (UniProtKB/TrEMBL),   A0A8C0KG74 (UniProtKB/TrEMBL),   A0A8I3P3X2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005620472   ⟸   XM_005620415
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013969337   ⟸   XM_014113862
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005620473   ⟸   XM_005620416
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSCAFP00000028625   ⟸   ENSCAFT00000030791
Ensembl Acc Id: ENSCAFP00000030844   ⟸   ENSCAFT00000035570
RefSeq Acc Id: XP_038332454   ⟸   XM_038476526
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038332453   ⟸   XM_038476525
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038332455   ⟸   XM_038476527
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038332456   ⟸   XM_038476528
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038332457   ⟸   XM_038476529
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038332459   ⟸   XM_038476531
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038332458   ⟸   XM_038476530
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038457762   ⟸   XM_038601834
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038457761   ⟸   XM_038601833
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038457763   ⟸   XM_038601835
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038457764   ⟸   XM_038601836
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038457765   ⟸   XM_038601837
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038457767   ⟸   XM_038601839
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038457766   ⟸   XM_038601838
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038522336   ⟸   XM_038666408
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038522335   ⟸   XM_038666407
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038522337   ⟸   XM_038666409
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RA95 (UniProtKB/TrEMBL),   A0A8C0KG74 (UniProtKB/TrEMBL),   A0A8I3P3X2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038522338   ⟸   XM_038666410
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038522339   ⟸   XM_038666411
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038522341   ⟸   XM_038666413
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038522340   ⟸   XM_038666412
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038378213   ⟸   XM_038522285
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038378244   ⟸   XM_038522316
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038393598   ⟸   XM_038537670
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038393597   ⟸   XM_038537669
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038393599   ⟸   XM_038537671
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KG74 (UniProtKB/TrEMBL),   A0A8C0RA95 (UniProtKB/TrEMBL),   A0A8I3P3X2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038393600   ⟸   XM_038537672
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038393601   ⟸   XM_038537673
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038393603   ⟸   XM_038537675
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038393602   ⟸   XM_038537674
- Peptide Label: isoform X5
Ensembl Acc Id: ENSCAFP00845022657   ⟸   ENSCAFT00845028791
Protein Domains
Neurotransmitter-gated ion-channel ligand-binding   Neurotransmitter-gated ion-channel transmembrane

Promoters
RGD ID:13683351
Promoter ID:EPDNEW_C1419
Type:initiation region
Name:GABRD_1
Description:gamma-aminobutyric acid type A receptor delta subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C1420  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1556,984,772 - 56,984,832EPDNEW
RGD ID:13683352
Promoter ID:EPDNEW_C1420
Type:multiple initiation site
Name:GABRD_2
Description:gamma-aminobutyric acid type A receptor delta subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C1419  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1556,984,941 - 56,985,001EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019374 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001442 UniProtKB/TrEMBL
  ENSCAFG00040004502 UniProtKB/TrEMBL
  ENSCAFG00845016184 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030791.2 UniProtKB/TrEMBL
  ENSCAFT00030002591.1 UniProtKB/TrEMBL
  ENSCAFT00040008551.1 UniProtKB/TrEMBL
  ENSCAFT00845028791 ENTREZGENE
  ENSCAFT00845028791.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro GABAA/Glycine_rcpt UniProtKB/TrEMBL
  GABAAd_rcpt UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
NCBI Gene GABRD ENTREZGENE
PANTHER PTHR18945 UniProtKB/TrEMBL
  PTHR18945:SF34 UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PRINTS GABAARDELTA UniProtKB/TrEMBL
  GABAARECEPTR UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/TrEMBL
  SSF90112 UniProtKB/TrEMBL
UniProt A0A8C0KG74 ENTREZGENE
  A0A8C0RA95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P3X2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41061 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-11 GABRD  gamma-aminobutyric acid type A receptor subunit delta  GABRD  gamma-aminobutyric acid type A receptor delta subunit  Symbol and/or name change 19259463 PROVISIONAL