Gabrd (gamma-aminobutyric acid type A receptor subunit delta) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gabrd (gamma-aminobutyric acid type A receptor subunit delta) Rattus norvegicus
Analyze
Symbol: Gabrd
Name: gamma-aminobutyric acid type A receptor subunit delta
RGD ID: 61901
Description: Enables GABA-A receptor activity. Involved in chemical synaptic transmission. Is active in GABA-ergic synapse and glutamatergic synapse. Is integral component of postsynaptic membrane. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 10. Orthologous to human GABRD (gamma-aminobutyric acid type A receptor subunit delta); INTERACTS WITH (+)-pilocarpine; 1,3,5-trinitro-1,3,5-triazinane; 3alpha-hydroxy-5beta-pregnan-20-one.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GABA(A) receptor subunit delta; GABA-A receptor delta-subunit; GABAA receptor delta subunit; GABAA-RD; gamma-aminobutyric acid (GABA) A receptor, delta; gamma-aminobutyric acid (GABA-A) receptor subunit delta; gamma-aminobutyric acid (GABA-A) receptor, subunit delta; gamma-aminobutyric acid A receptor, delta; gamma-aminobutyric acid receptor subunit delta; gamma-aminobutyric acid type A receptor delta subunit; MGC105467
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25165,958,508 - 165,970,407 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5165,958,484 - 165,970,411 (-)Ensembl
Rnor_6.05172,797,478 - 172,809,374 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,797,450 - 172,809,353 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,255,724 - 176,267,620 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,203,064 - 172,214,960 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15172,213,559 - 172,225,455 (-)NCBI
Celera5164,160,929 - 164,172,825 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Adolescent female rats exhibiting activity-based anorexia express elevated levels of GABA(A) receptor a4 and d subunits at the plasma membrane of hippocampal CA1 spines. Aoki C, etal., Synapse. 2012 May;66(5):391-407. doi: 10.1002/syn.21528. Epub 2012 Feb 15.
2. Atomic force microscopy reveals the stoichiometry and subunit arrangement of the alpha4beta3delta GABA(A) receptor. Barrera NP, etal., Mol Pharmacol. 2008 Mar;73(3):960-7. doi: 10.1124/mol.107.042481. Epub 2007 Dec 13.
3. Slow phases of GABA(A) receptor desensitization: structural determinants and possible relevance for synaptic function. Bianchi MT and Macdonald RL, J Physiol 2002 Oct 1;544(Pt 1):3-18.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Chronic intermittent ethanol-induced switch of ethanol actions from extrasynaptic to synaptic hippocampal GABAA receptors. Liang J, etal., J Neurosci. 2006 Feb 8;26(6):1749-58. doi: 10.1523/JNEUROSCI.4702-05.2006.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
14. Isolation of distantly related members in a multigene family using the polymerase chain reaction technique. Zhao ZY and Joho RH, Biochem Biophys Res Commun 1990 Feb 28;167(1):174-82.
Additional References at PubMed
PMID:1312131   PMID:1312132   PMID:1379501   PMID:2561970   PMID:8195163   PMID:12477932   PMID:14627650   PMID:15152020   PMID:15489334   PMID:15708482   PMID:15834956   PMID:16879715  
PMID:17056007   PMID:17395622   PMID:17854781   PMID:18406065   PMID:19665523   PMID:21298071   PMID:21368141   PMID:21395866   PMID:21439793   PMID:23079628   PMID:24062647   PMID:24199598  
PMID:25339733   PMID:27382064   PMID:32803504   PMID:34202516  


Genomics

Comparative Map Data
Gabrd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25165,958,508 - 165,970,407 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5165,958,484 - 165,970,411 (-)Ensembl
Rnor_6.05172,797,478 - 172,809,374 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,797,450 - 172,809,353 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,255,724 - 176,267,620 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,203,064 - 172,214,960 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15172,213,559 - 172,225,455 (-)NCBI
Celera5164,160,929 - 164,172,825 (-)NCBICelera
Cytogenetic Map5q36NCBI
GABRD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812,019,345 - 2,030,758 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl12,019,329 - 2,030,758 (+)EnsemblGRCh38hg38GRCh38
GRCh3711,950,784 - 1,962,197 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,940,703 - 1,952,050 (+)NCBINCBI36hg18NCBI36
Build 3411,983,004 - 1,994,352NCBI
Celera1630,843 - 641,887 (-)NCBI
Cytogenetic Map1p36.33NCBI
HuRef11,233,788 - 1,239,603 (+)NCBIHuRef
CHM1_111,937,892 - 1,949,316 (+)NCBICHM1_1
T2T-CHM13v2.011,454,897 - 1,466,310 (+)NCBI
Gabrd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,469,436 - 155,482,549 (-)NCBIGRCm39mm39
GRCm39 Ensembl4155,469,437 - 155,482,569 (-)Ensembl
GRCm384155,384,979 - 155,398,098 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,384,980 - 155,398,112 (-)EnsemblGRCm38mm10GRCm38
MGSCv374154,759,088 - 154,772,178 (-)NCBIGRCm37mm9NCBIm37
MGSCv364154,228,780 - 154,241,862 (-)NCBImm8
Celera4157,658,925 - 157,672,022 (-)NCBICelera
Cytogenetic Map4E2NCBI
Gabrd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,035,330 - 9,039,557 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,035,330 - 9,039,553 (-)NCBIChiLan1.0ChiLan1.0
GABRD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111,883,955 - 1,895,102 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,883,955 - 1,895,102 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01731,714 - 743,165 (+)NCBIMhudiblu_PPA_v0panPan3
GABRD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,984,786 - 56,994,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,984,913 - 56,994,358 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha557,061,831 - 57,077,443 (+)NCBI
ROS_Cfam_1.0557,188,326 - 57,203,524 (+)NCBI
ROS_Cfam_1.0 Ensembl557,188,279 - 57,198,308 (+)Ensembl
UMICH_Zoey_3.1557,178,812 - 57,194,421 (+)NCBI
UNSW_CanFamBas_1.0557,071,329 - 57,086,939 (+)NCBI
UU_Cfam_GSD_1.0557,461,155 - 57,476,777 (+)NCBI
Gabrd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,059,911 - 28,065,511 (+)NCBI
SpeTri2.0NW_0049367371,400,437 - 1,405,885 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl664,049,675 - 64,059,640 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1664,049,665 - 64,059,644 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,561,062 - 58,563,060 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GABRD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,530,049 - 129,541,437 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20129,529,108 - 129,541,580 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605433,917,754 - 33,929,160 (-)NCBIVero_WHO_p1.0
Gabrd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,856,797 - 7,864,540 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248187,856,797 - 7,864,552 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH143455  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25165,958,740 - 165,958,915 (+)MAPPERmRatBN7.2
Rnor_6.05172,797,711 - 172,797,885NCBIRnor6.0
Rnor_5.05176,255,957 - 176,256,131UniSTSRnor5.0
RGSC_v3.45172,203,297 - 172,203,471UniSTSRGSC3.4
Celera5164,161,162 - 164,161,336UniSTS
RH 3.4 Map51161.3UniSTS
Cytogenetic Map5q36UniSTS
RH139554  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25165,959,513 - 165,959,961 (+)MAPPERmRatBN7.2
Rnor_6.05172,798,484 - 172,798,931NCBIRnor6.0
Rnor_5.05176,256,730 - 176,257,177UniSTSRnor5.0
RGSC_v3.45172,204,070 - 172,204,517UniSTSRGSC3.4
Celera5164,161,935 - 164,162,382UniSTS
Cytogenetic Map5q36UniSTS
BF390464  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25165,968,817 - 165,969,029 (+)MAPPERmRatBN7.2
Rnor_6.05172,807,785 - 172,807,996NCBIRnor6.0
Rnor_5.05176,266,031 - 176,266,242UniSTSRnor5.0
RGSC_v3.45172,213,371 - 172,213,582UniSTSRGSC3.4
Celera5164,171,236 - 164,171,447UniSTS
Cytogenetic Map5q36UniSTS
PMC23157P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25165,962,082 - 165,962,532 (+)MAPPERmRatBN7.2
Rnor_6.05172,801,053 - 172,801,502NCBIRnor6.0
Rnor_5.05176,259,299 - 176,259,748UniSTSRnor5.0
RGSC_v3.45172,206,639 - 172,207,088UniSTSRGSC3.4
Celera5164,164,504 - 164,164,953UniSTS
Cytogenetic Map5q36UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:303
Count of miRNA genes:178
Interacting mature miRNAs:204
Transcripts:ENSRNOT00000022246
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 25
Low 2 1 1 16 6
Below cutoff 3 1 7 7 2 7 4 4 17 3 12 4 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000022246   ⟹   ENSRNOP00000022246
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5165,958,508 - 165,970,411 (-)Ensembl
Rnor_6.0 Ensembl5172,797,450 - 172,809,353 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101067   ⟹   ENSRNOP00000089309
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5165,958,484 - 165,962,649 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116622   ⟹   ENSRNOP00000088379
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5165,958,484 - 165,962,962 (-)Ensembl
RefSeq Acc Id: NM_017289   ⟹   NP_058985
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25165,958,508 - 165,970,407 (-)NCBI
Rnor_6.05172,797,478 - 172,809,374 (-)NCBI
Rnor_5.05176,255,724 - 176,267,620 (-)NCBI
RGSC_v3.45172,203,064 - 172,214,960 (-)RGD
Celera5164,160,929 - 164,172,825 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058985   ⟸   NM_017289
- Peptide Label: precursor
- UniProtKB: P18506 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000022246   ⟸   ENSRNOT00000022246
RefSeq Acc Id: ENSRNOP00000089309   ⟸   ENSRNOT00000101067
RefSeq Acc Id: ENSRNOP00000088379   ⟸   ENSRNOT00000116622

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P18506-F1-model_v2 AlphaFold P18506 1-449 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61901 AgrOrtholog
BioCyc Gene G2FUF-38928 BioCyc
Ensembl Genes ENSRNOG00000016385 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000022246 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000088379.1 UniProtKB/TrEMBL
  ENSRNOP00000089309.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022246 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000101067.1 UniProtKB/TrEMBL
  ENSRNOT00000116622.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/Swiss-Prot
  2.70.170.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7317154 IMAGE-MGC_LOAD
InterPro GABAA/Glycine_rcpt UniProtKB/Swiss-Prot
  GABAAd_rcpt UniProtKB/Swiss-Prot
  Neur_chan_lig-bd UniProtKB/Swiss-Prot
  Neur_chan_lig-bd_sf UniProtKB/Swiss-Prot
  Neur_channel UniProtKB/Swiss-Prot
  Neuro-gated_channel_TM_sf UniProtKB/Swiss-Prot
  Neuro_actylchol_rec UniProtKB/Swiss-Prot
  Neurotrans-gated_channel_TM UniProtKB/Swiss-Prot
  Neurotransmitter_ion_chnl_CS UniProtKB/Swiss-Prot
KEGG Report rno:29689 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105467 IMAGE-MGC_LOAD
NCBI Gene 29689 ENTREZGENE
PANTHER PTHR18945 UniProtKB/Swiss-Prot
  PTHR18945:SF34 UniProtKB/Swiss-Prot
Pfam Neur_chan_LBD UniProtKB/Swiss-Prot
  Neur_chan_memb UniProtKB/Swiss-Prot
PhenoGen Gabrd PhenoGen
PRINTS GABAARDELTA UniProtKB/Swiss-Prot
  GABAARECEPTR UniProtKB/Swiss-Prot
  NRIONCHANNEL UniProtKB/Swiss-Prot
PROSITE NEUROTR_ION_CHANNEL UniProtKB/Swiss-Prot
Superfamily-SCOP SSF63712 UniProtKB/Swiss-Prot
  SSF90112 UniProtKB/Swiss-Prot
TIGR TC220573
TIGRFAMs LIC UniProtKB/Swiss-Prot
UniProt A0A8I6A7X2_RAT UniProtKB/TrEMBL
  A0A8I6A9V9_RAT UniProtKB/TrEMBL
  GBRD_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-06 Gabrd  gamma-aminobutyric acid type A receptor subunit delta  Gabrd  gamma-aminobutyric acid type A receptor delta subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Gabrd  gamma-aminobutyric acid type A receptor delta subunit  Gabrd  gamma-aminobutyric acid (GABA) A receptor, delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-04 Gabrd  gamma-aminobutyric acid (GABA) A receptor, delta  Gabrd  gamma-aminobutyric acid (GABA-A) receptor, subunit delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-11 Gabrd  gamma-aminobutyric acid (GABA-A) receptor, subunit delta  Gabrd  gamma-aminobutyric acid (GABA) A receptor, delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-18 Gabrd  gamma-aminobutyric acid (GABA) A receptor, delta  Gabrd  gamma-aminobutyric acid A receptor, delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Gabrd  gamma-aminobutyric acid A receptor, delta      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference