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Gene: LYSMD2 (LysM domain containing 2) Canis lupus familiaris

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Symbol:

LYSMD2

Name:

LysM domain containing 2

RGD ID:

12107287

Description:

ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); COVID-19 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lysM and putative peptidoglycan-binding domain-containing protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	17,409,338 - 17,424,092 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	17,409,326 - 17,419,698 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	17,335,717 - 17,350,954 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	17,555,537 - 17,570,863 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	30	17,476,950 - 17,492,170 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	17,595,219 - 17,610,542 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	17,701,849 - 17,717,075 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

COVID-19 (ISO)

developmental and epileptic encephalopathy 13 (ISO)

paraplegia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

LYSMD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	17,409,338 - 17,424,092 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	17,409,326 - 17,419,698 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	17,335,717 - 17,350,954 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	17,555,537 - 17,570,863 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	30	17,476,950 - 17,492,170 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	17,595,219 - 17,610,542 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	17,701,849 - 17,717,075 (-)	NCBI		UU_Cfam_GSD_1.0

LYSMD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	51,723,011 - 51,751,451 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	51,723,011 - 51,751,585 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	52,015,208 - 52,043,648 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	49,802,553 - 49,817,608 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	28,908,680 - 28,937,069 (-)	NCBI		Celera
Cytogenetic Map	15	q21.2	NCBI
HuRef	15	28,845,769 - 28,874,158 (-)	NCBI		HuRef
CHM1_1	15	52,133,295 - 52,161,686 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	49,530,506 - 49,558,957 (-)	NCBI		T2T-CHM13v2.0

Lysmd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	75,532,403 - 75,545,055 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	75,533,023 - 75,545,053 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	75,625,121 - 75,637,773 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	75,625,741 - 75,637,771 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	75,473,539 - 75,485,580 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	75,411,650 - 75,423,680 (+)	NCBI		MGSCv36	mm8
Celera	9	72,789,273 - 72,801,670 (+)	NCBI		Celera
Cytogenetic Map	9	D	NCBI
cM Map	9	42.32	NCBI

Lysmd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	85,259,443 - 85,274,876 (+)	NCBI		GRCr8
mRatBN7.2	8	76,378,984 - 76,394,396 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	76,379,219 - 76,394,654 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	81,886,735 - 81,901,921 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	80,151,634 - 80,166,707 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	77,986,076 - 78,001,262 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	82,560,363 - 82,576,662 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	82,560,761 - 82,577,019 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	82,160,974 - 82,178,174 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	80,446,544 - 80,462,607 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	80,465,376 - 80,482,027 (+)	NCBI
Celera	8	76,169,272 - 76,184,220 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

Lysmd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955409	2,862,478 - 2,874,017 (+)	NCBI	ChiLan1.0	ChiLan1.0

LYSMD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	40,957,284 - 40,985,782 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	45,137,692 - 45,166,309 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	30,661,922 - 30,690,653 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	48,992,788 - 49,021,152 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

Lysmd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	95,707,101 - 95,722,257 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	13,555,157 - 13,562,256 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	13,555,166 - 13,570,268 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LYSMD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	120,026,532 - 120,043,127 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	120,009,417 - 120,043,146 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	133,183,213 - 133,216,939 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LYSMD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	31,624,953 - 31,652,483 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	31,637,208 - 31,652,547 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	109,562,210 - 109,589,937 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lysmd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	8,630,532 - 8,644,577 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	8,630,551 - 8,644,510 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LYSMD2
114 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005638413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005638414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038442340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038442341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038442342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038442343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038461470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038461471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038516786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038516787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038516788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038516789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038580424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038580425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038580426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038580427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038644725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038644726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038644727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038644728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_535483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000024586 ⟹ ENSCAFP00000022821

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	30	17,409,326 - 17,419,698 (-)	Ensembl

RefSeq Acc Id:

XM_005638413 ⟹ XP_005638470

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	30	17,409,338 - 17,412,068 (-)	NCBI
Dog10K_Boxer_Tasha	30	17,335,717 - 17,338,204 (-)	NCBI

Sequence:

show sequence

GGGCCTCAATTCTAGGACCTCGGGATCACTACCTGAGCCAAAGGCAGATGCTCAACCCCTGAGC
CACCCAGGCATCCCTGTAAAGTGGATCTTCAAATGCCTACTCCAAAAAAATAAAAAATAAAATA
AAAATAAAAATAAAAAAAATGCTACTCCATGGGTGGGTGGGTGGAGACACAACAATATGAGATA
TACTGTATGTAATGTACTCCCCTCTTCTTTTCCTTACCTGTACTGCTTGGACCCGTTCTTCAGG
GCCCATCTAAAGTCAAAAGAATCAAAATTGGAACCCCACCTTCTCGGTGAGGCCTTTCTTAATG
CCTGGAGCCCCAGTCTACACCATTCTTGCATGTGCAATGTGCAATGTTGTGTTTATCTCTGTAC
CAGCTCCTGTATCCATTTTATTTACCAAACATAATTCCAGAGACAGCGGAAGTACTCTATGGAG
CAGATTAAAAGGGCAAATAAACTGTTTACCAGTGATTGTATATTTCTGAAAAAAACTTTGAACA
TCCCAGTTATATCAGAGAAGCCTTTGTCGTTTAATGGGCTTAACTCAATAGATTCTCCAGAAAG
TGAAACTGTTGGTAGCAGTTTTTCTCATGAAGAAGAGCCGACAGCAGCTGGGGAAGACCTCTCT
CCTCCTAGTCCTCAAGAATCCGACGTTCAGCCAGTACAGCCTGAAGAAGTATCAGCTAGAGATT
TCCTGCAGAGACTAGACTTGCAGATTAAGTTGTCAACACAGGCAGCCAAGAAACTAAAAGAAGA
GAGCAGAGATGAAGAAAGTCCCTATGCAACTTCCCTCTATCACAGTTAGATGATCAAGGGTGAT
AATCTAACCTGGATTGAGAGCTGTTTGGATCATAACGAAAACAACAACTGAAGATTCAAAAGCA
TACATCCTTTAAATCACAGTTTAGTAGTTCCACCTACTGCAATTGCACTGAAATGATTATTTCC
CTCTGGCTTTCTATAATTTTAAGTCTTTATTATGGCATGAGAGCAAAATTATATCCTAAAGCTC
ATCACTTTTGTAGGTGATGGTAGTTTTTAGACTAGTTTTTGTAAATACTAGTTAACATAAAGCA
TCAAAGACTATATACATATTCAAGCTGAAAACAATGTTGGTCGTCTGAGAAATCTTAAGTATGT
GAAATACATGGTTGCTGTTTAAGTGATGCTGATTTTGCTATGTATTTATAACTTAAGTGCTATA
TATATATATTTCGATATGTATTACATATTCTGTATTAATATAAAGAACCAAATTTTGTCTGCTA
TTTTGTAAAATAAACTACAAAAGCCTGAATGAGAAAATAAAT

hide sequence

RefSeq Acc Id:

XM_038442340 ⟹ XP_038298268

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	17,555,537 - 17,570,863 (-)	NCBI

RefSeq Acc Id:

XM_038442341 ⟹ XP_038298269

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	17,555,537 - 17,570,665 (-)	NCBI

RefSeq Acc Id:

XM_038442342 ⟹ XP_038298270

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	17,555,537 - 17,558,030 (-)	NCBI

RefSeq Acc Id:

XM_038442343 ⟹ XP_038298271

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	17,555,537 - 17,570,295 (-)	NCBI

RefSeq Acc Id:

XM_038461470 ⟹ XP_038317398

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	30	17,335,717 - 17,350,954 (-)	NCBI

RefSeq Acc Id:

XM_038461471 ⟹ XP_038317399

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	30	17,335,717 - 17,350,759 (-)	NCBI

RefSeq Acc Id:

XM_038516786 ⟹ XP_038372714

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	17,476,950 - 17,492,170 (-)	NCBI

RefSeq Acc Id:

XM_038516787 ⟹ XP_038372715

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	17,476,950 - 17,491,975 (-)	NCBI

RefSeq Acc Id:

XM_038516788 ⟹ XP_038372716

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	17,476,950 - 17,479,436 (-)	NCBI

RefSeq Acc Id:

XM_038516789 ⟹ XP_038372717

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	17,476,950 - 17,491,695 (-)	NCBI

RefSeq Acc Id:

XM_038580424 ⟹ XP_038436352

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	17,701,849 - 17,717,075 (-)	NCBI

RefSeq Acc Id:

XM_038580425 ⟹ XP_038436353

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	17,701,849 - 17,716,880 (-)	NCBI

RefSeq Acc Id:

XM_038580426 ⟹ XP_038436354

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	17,701,849 - 17,704,336 (-)	NCBI

RefSeq Acc Id:

XM_038580427 ⟹ XP_038436355

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	17,701,849 - 17,716,600 (-)	NCBI

RefSeq Acc Id:

XM_038644725 ⟹ XP_038500653

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	17,595,219 - 17,610,542 (-)	NCBI

RefSeq Acc Id:

XM_038644726 ⟹ XP_038500654

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	17,595,219 - 17,610,344 (-)	NCBI

RefSeq Acc Id:

XM_038644727 ⟹ XP_038500655

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	17,595,219 - 17,597,706 (-)	NCBI

RefSeq Acc Id:

XM_038644728 ⟹ XP_038500656

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	17,595,219 - 17,609,974 (-)	NCBI

RefSeq Acc Id:

XM_535483 ⟹ XP_535483

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	30	17,409,338 - 17,424,092 (-)	NCBI
Dog10K_Boxer_Tasha	30	17,335,717 - 17,350,468 (-)	NCBI

Sequence:

show sequence

CACCGAGCTCCGGGGGACCTGCCCGGCCTCGGCCCGGACGCGTGAGCGAGGCCCGCGAGGACCC
GGGAGCGGCGACCACCCGATCTCCAGGCCGGATCACACCACCGTAGTGCGTGTTTACTCAAAGC
CGAGCCGAGAGATGGAGCAGATTAAAAGGGCAAATAAACTGTTTACCAGTGATTGTATATTTCT
GAAAAAAACTTTGAACATCCCAGTTATATCAGAGAAGCCTTTGTCGTTTAATGGGCTTAACTCA
ATAGATTCTCCAGAAAGTGAAACTGTTGGTAGCAGTTTTTCTCATGAAGAAGAGCCGACAGCAG
CTGGGGAAGACCTCTCTCCTCCTAGTCCTCAAGAATCCGACGTTCAGCCAGTACAGCCTGAAGA
AGTATCAGCTAGAGATTTCCTGCAGAGACTAGACTTGCAGATTAAGTTGTCAACACAGGCAGCC
AAGAAACTAAAAGAAGAGAGCAGAGATGAAGAAAGTCCCTATGCAACTTCCCTCTATCACAGTT
AGATGATCAAGGGTGATAATCTAACCTGGATTGAGAGCTGTTTGGATCATAACGAAAACAACAA
CTGAAGATTCAAAAGCATACATCCTTTAAATCACAGTTTAGTAGTTCCACCTACTGCAATTGCA
CTGAAATGATTATTTCCCTCTGGCTTTCTATAATTTTAAGTCTTTATTATGGCATGAGAGCAAA
ATTATATCCTAAAGCTCATCACTTTTGTAGGTGATGGTAGTTTTTAGACTAGTTTTTGTAAATA
CTAGTTAACATAAAGCATCAAAGACTATATACATATTCAAGCTGAAAACAATGTTGGTCGTCTG
AGAAATCTTAAGTATGTGAAATACATGGTTGCTGTTTAAGTGATGCTGATTTTGCTATGTATTT
ATAACTTAAGTGCTATATATATATATTTCGATATGTATTACATATTCTGTATTAATATAAAGAA
CCAAATTTTGTCTGCTATTTTGTAAAATAAACTACAAAAGCCTGAATGAGAAAATAAAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005638470	(Get FASTA)	NCBI Sequence Viewer
	XP_038298268	(Get FASTA)	NCBI Sequence Viewer
	XP_038298269	(Get FASTA)	NCBI Sequence Viewer
	XP_038298270	(Get FASTA)	NCBI Sequence Viewer
	XP_038298271	(Get FASTA)	NCBI Sequence Viewer
	XP_038317398	(Get FASTA)	NCBI Sequence Viewer
	XP_038317399	(Get FASTA)	NCBI Sequence Viewer
	XP_038372714	(Get FASTA)	NCBI Sequence Viewer
	XP_038372715	(Get FASTA)	NCBI Sequence Viewer
	XP_038372716	(Get FASTA)	NCBI Sequence Viewer
	XP_038372717	(Get FASTA)	NCBI Sequence Viewer
	XP_038436352	(Get FASTA)	NCBI Sequence Viewer
	XP_038436353	(Get FASTA)	NCBI Sequence Viewer
	XP_038436354	(Get FASTA)	NCBI Sequence Viewer
	XP_038436355	(Get FASTA)	NCBI Sequence Viewer
	XP_038500653	(Get FASTA)	NCBI Sequence Viewer
	XP_038500654	(Get FASTA)	NCBI Sequence Viewer
	XP_038500655	(Get FASTA)	NCBI Sequence Viewer
	XP_038500656	(Get FASTA)	NCBI Sequence Viewer
	XP_535483	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000022821.4
	ENSCAFP00000072728.1
	ENSCAFP00030037404.1
	ENSCAFP00845036148
	ENSCAFP00845036148.1
	ENSCAFP00845036190.1

RefSeq Acc Id:	XP_535483 ⟸ XM_535483
- Peptide Label:	isoform X2
- UniProtKB:	A0A8P0NH84 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQIKRANKLFTSDCIFLKKTLNIPVISEKPLSFNGLNSIDSPESETVGSSFSHEEEPTAAGED LSPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATSLYHS hide sequence

RefSeq Acc Id:	XP_005638470 ⟸ XM_005638413
- Peptide Label:	isoform X2
- UniProtKB:	A0A8P0NH84 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQIKRANKLFTSDCIFLKKTLNIPVISEKPLSFNGLNSIDSPESETVGSSFSHEEEPTAAGED LSPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATSLYHS hide sequence

Ensembl Acc Id:

ENSCAFP00000022821 ⟸ ENSCAFT00000024586

RefSeq Acc Id:	XP_038372714 ⟸ XM_038516786
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038372715 ⟸ XM_038516787
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038372717 ⟸ XM_038516789
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038372716 ⟸ XM_038516788
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038500653 ⟸ XM_038644725
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038500654 ⟸ XM_038644726
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038500656 ⟸ XM_038644728
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038500655 ⟸ XM_038644727
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038298268 ⟸ XM_038442340
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038298269 ⟸ XM_038442341
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0R3W5 (UniProtKB/TrEMBL), A0A8I3PWC0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038298271 ⟸ XM_038442343
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0R3W5 (UniProtKB/TrEMBL), A0A8I3PWC0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038298270 ⟸ XM_038442342
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0R3W5 (UniProtKB/TrEMBL), A0A8I3PWC0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038317398 ⟸ XM_038461470
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038317399 ⟸ XM_038461471
- Peptide Label:	isoform X2
- UniProtKB:	A0A8P0NH84 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038436352 ⟸ XM_038580424
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0P613 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038436353 ⟸ XM_038580425
- Peptide Label:	isoform X2
- UniProtKB:	A0A8P0NH84 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038436355 ⟸ XM_038580427
- Peptide Label:	isoform X2
- UniProtKB:	A0A8P0NH84 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038436354 ⟸ XM_038580426
- Peptide Label:	isoform X2
- UniProtKB:	A0A8P0NH84 (UniProtKB/TrEMBL)

Protein Domains

LysM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000015502	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030023304	UniProtKB/TrEMBL
	ENSCAFG00845026097	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000024586.5	UniProtKB/TrEMBL
	ENSCAFT00000109231.1	UniProtKB/TrEMBL
	ENSCAFT00030042861.1	UniProtKB/TrEMBL
	ENSCAFT00845046042	ENTREZGENE
	ENSCAFT00845046042.1	UniProtKB/TrEMBL
	ENSCAFT00845046093.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.350.10	UniProtKB/TrEMBL
InterPro	LYSM1-4	UniProtKB/TrEMBL
	LysM_dom	UniProtKB/TrEMBL
	LysM_dom_sf	UniProtKB/TrEMBL
NCBI Gene	LYSMD2	ENTREZGENE
PANTHER	AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 2-RELATED	UniProtKB/TrEMBL
	PTHR20932	UniProtKB/TrEMBL
Pfam	LysM	UniProtKB/TrEMBL
PROSITE	LYSM	UniProtKB/TrEMBL
SMART	LysM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54106	UniProtKB/TrEMBL
UniProt	A0A8C0P613	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0R3W5	ENTREZGENE
	A0A8I3PWC0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S5R2_CANLF	UniProtKB/TrEMBL
	A0A8P0NH84	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PNL3_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:59119	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar