RNF26 (ring finger protein 26) - Rat Genome Database

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Gene: RNF26 (ring finger protein 26) Canis lupus familiaris
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Symbol: RNF26
Name: ring finger protein 26
RGD ID: 12097752
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN endosome organization (ortholog); negative regulation of defense response to virus (ortholog); protein K11-linked ubiquitination (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF26
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,564,949 - 14,567,756 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,618,431 - 14,621,237 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,508,302 - 14,511,107 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1514,646,590 - 14,649,394 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,550,582 - 14,553,387 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,590,708 - 14,593,515 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RNF26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,564,949 - 14,567,756 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,618,431 - 14,621,237 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,508,302 - 14,511,107 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1514,646,590 - 14,649,394 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,550,582 - 14,553,387 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,590,708 - 14,593,515 (-)NCBIUU_Cfam_GSD_1.0
RNF26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811119,334,527 - 119,337,309 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11119,334,527 - 119,337,309 (+)EnsemblGRCh38hg38GRCh38
GRCh3711119,205,237 - 119,208,019 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,710,447 - 118,713,232 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411118,710,446 - 118,713,231NCBI
Celera11116,365,908 - 116,368,693 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11115,145,909 - 115,148,723 (+)NCBIHuRef
CHM1_111119,091,769 - 119,094,583 (+)NCBICHM1_1
T2T-CHM13v2.011119,355,164 - 119,357,946 (+)NCBIT2T-CHM13v2.0
Rnf26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,022,078 - 44,024,348 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl943,977,624 - 44,024,797 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl944,006,928 - 44,024,814 (-)EnsemblGRCm39 Ensembl
GRCm38944,110,781 - 44,113,051 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,095,631 - 44,113,517 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl944,066,327 - 44,113,500 (-)EnsemblGRCm38mm10GRCm38
MGSCv37943,918,864 - 43,921,134 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36943,861,776 - 43,864,046 (-)NCBIMGSCv36mm8
Celera678,512,145 - 78,514,433 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map924.53NCBI
Rnf26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,351,388 - 53,353,586 (-)NCBIGRCr8
mRatBN7.2844,454,551 - 44,456,745 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,454,292 - 44,457,331 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx849,952,792 - 49,954,990 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,231,502 - 48,233,700 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,099,121 - 46,101,309 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,447,113 - 48,449,311 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,447,113 - 48,449,311 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,062,942 - 47,065,140 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,092,910 - 47,095,108 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,102,330 - 47,104,426 (-)NCBI
Celera844,041,748 - 44,043,946 (-)NCBICelera
Cytogenetic Map8q22NCBI
Rnf26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,416,067 - 20,417,368 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,415,468 - 20,418,263 (+)NCBIChiLan1.0ChiLan1.0
RNF26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29120,042,260 - 120,045,069 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111121,145,774 - 121,148,583 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011114,175,586 - 114,178,379 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111118,102,883 - 118,105,698 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11118,103,505 - 118,104,806 (+)Ensemblpanpan1.1panPan2
Rnf26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,343,833 - 101,346,628 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365424,265,226 - 4,268,037 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,543,735 - 46,546,569 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,543,732 - 46,546,570 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,577,978 - 51,580,815 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,713,453 - 110,716,281 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,714,081 - 110,715,379 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,318,719 - 15,321,545 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478414,703,369 - 14,706,194 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RNF26
37 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005619676   ⟹   XP_005619733
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1514,564,949 - 14,567,756 (-)NCBI
Dog10K_Boxer_Tasha514,618,431 - 14,621,237 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038474777   ⟹   XP_038330705
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1514,646,590 - 14,649,394 (-)NCBI
RefSeq Acc Id: XM_038535922   ⟹   XP_038391850
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0514,590,708 - 14,593,515 (-)NCBI
RefSeq Acc Id: XM_038600117   ⟹   XP_038456045
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0514,550,582 - 14,553,387 (-)NCBI
RefSeq Acc Id: XM_038664655   ⟹   XP_038520583
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0514,508,302 - 14,511,107 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005619733 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330705 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391850 (Get FASTA)   NCBI Sequence Viewer  
  XP_038456045 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520583 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00030004882.1
RefSeq Acc Id: XP_005619733   ⟸   XM_005619676
- UniProtKB: A0A8C0KK23 (UniProtKB/TrEMBL),   A0A8C0MBU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038330705   ⟸   XM_038474777
RefSeq Acc Id: XP_038456045   ⟸   XM_038600117
RefSeq Acc Id: XP_038520583   ⟸   XM_038664655
- UniProtKB: A0A8C0KK23 (UniProtKB/TrEMBL),   A0A8C0MBU3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391850   ⟸   XM_038535922
- UniProtKB: A0A8C0KK23 (UniProtKB/TrEMBL),   A0A8C0MBU3 (UniProtKB/TrEMBL)
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00030002953 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030005485.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro RNF26_mRING-HC-C3HC5 UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene RNF26 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF26 UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE RNF26 UniProtKB/TrEMBL
Pfam zf-C3HC4_3 UniProtKB/TrEMBL
PROSITE ZF_RING_2 UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8C0KK23 ENTREZGENE
  A0A8C0MBU3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:45666 ENTREZGENE