TEX46 (testis expressed 46) - Rat Genome Database

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Gene: TEX46 (testis expressed 46) Canis lupus familiaris
Analyze
Symbol: TEX46
Name: testis expressed 46
RGD ID: 12095375
Description: ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C2H1orf234; chromosome 2 C1orf234 homolog; testis-expressed protein 46; uncharacterized protein C1orf234 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,380,574 - 76,383,485 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,379,803 - 76,383,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha272,885,402 - 72,888,316 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,938,982 - 76,941,893 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,939,079 - 76,941,819 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,760,872 - 73,763,778 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,769,078 - 74,771,991 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,772,550 - 75,775,461 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
TEX46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,380,574 - 76,383,485 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,379,803 - 76,383,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha272,885,402 - 72,888,316 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,938,982 - 76,941,893 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,939,079 - 76,941,819 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,760,872 - 73,763,778 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,769,078 - 74,771,991 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,772,550 - 75,775,461 (+)NCBIUU_Cfam_GSD_1.0
TEX46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38123,010,834 - 23,015,852 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl123,010,834 - 23,019,100 (-)EnsemblGRCh38hg38GRCh38
GRCh37123,337,327 - 23,342,345 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36123,209,914 - 23,214,930 (-)NCBINCBI36Build 36hg18NCBI36
Celera121,659,454 - 21,664,468 (-)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef121,581,524 - 21,586,549 (-)NCBIHuRef
CHM1_1123,450,058 - 23,455,074 (-)NCBICHM1_1
T2T-CHM13v2.0122,836,535 - 22,841,556 (-)NCBIT2T-CHM13v2.0
Tex46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,334,313 - 136,340,590 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,337,748 - 136,340,537 (+)EnsemblGRCm39 Ensembl
GRCm384136,607,091 - 136,613,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,610,437 - 136,613,226 (+)EnsemblGRCm38mm10GRCm38
MGSCv374136,166,352 - 136,169,128 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364135,882,513 - 135,885,289 (+)NCBIMGSCv36mm8
MGSCv364134,199,037 - 134,201,450 (+)NCBIMGSCv36mm8
Celera4134,804,760 - 134,805,010 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map468.92NCBI
Tex46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85154,132,763 - 154,137,196 (+)NCBIGRCr8
mRatBN7.25148,849,307 - 148,853,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5148,849,307 - 148,853,742 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5151,546,825 - 151,551,274 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05153,321,111 - 153,325,560 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05153,303,119 - 153,307,568 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05154,976,211 - 154,980,671 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5154,976,165 - 154,980,712 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05158,741,388 - 158,745,510 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45155,370,254 - 155,375,025 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15155,380,405 - 155,385,064 (+)NCBI
Celera5147,249,671 - 147,254,123 (+)NCBICelera
Cytogenetic Map5q36NCBI
Tex46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554523,037,753 - 3,041,356 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554523,038,467 - 3,041,193 (-)NCBIChiLan1.0ChiLan1.0
TEX46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21203,930,781 - 203,936,807 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11203,033,780 - 203,038,973 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0122,196,601 - 22,200,839 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1123,144,251 - 23,147,573 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl123,144,318 - 23,149,172 (-)Ensemblpanpan1.1panPan2
Tex46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,423,679 - 42,426,579 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364748,248,501 - 8,251,233 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl680,896,647 - 80,898,927 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1680,896,029 - 80,898,954 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2674,931,982 - 74,934,969 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEX46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120109,663,661 - 109,667,001 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20109,663,788 - 109,666,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660336,651,463 - 6,654,706 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247647,658,314 - 7,661,438 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TEX46
35 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 1 1
Below cutoff 3 3 11 3 2 2 11 6 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000036521   ⟹   ENSCAFP00000031909
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl276,379,803 - 76,383,411 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845000401   ⟹   ENSCAFP00845000273
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl276,939,079 - 76,941,819 (+)Ensembl
RefSeq Acc Id: XM_014107429   ⟹   XP_013962904
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1276,380,574 - 76,383,485 (+)NCBI
Dog10K_Boxer_Tasha272,885,402 - 72,888,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038470793   ⟹   XP_038326721
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1273,760,872 - 73,763,778 (+)NCBI
RefSeq Acc Id: XM_038531656   ⟹   XP_038387584
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0275,772,550 - 75,775,461 (+)NCBI
RefSeq Acc Id: XM_038595886   ⟹   XP_038451814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0274,769,078 - 74,771,991 (+)NCBI
RefSeq Acc Id: XM_038659965   ⟹   XP_038515893
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0276,938,982 - 76,941,893 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013962904   ⟸   XM_014107429
- UniProtKB: A0A8C0M081 (UniProtKB/TrEMBL),   A0A8C0L5F0 (UniProtKB/TrEMBL),   A0A8I3MEY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000031909   ⟸   ENSCAFT00000036521
RefSeq Acc Id: XP_038326721   ⟸   XM_038470793
RefSeq Acc Id: XP_038451814   ⟸   XM_038595886
RefSeq Acc Id: XP_038515893   ⟸   XM_038659965
- UniProtKB: A0A8C0M081 (UniProtKB/TrEMBL),   A0A8C0L5F0 (UniProtKB/TrEMBL),   A0A8I3MEY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387584   ⟸   XM_038531656
- UniProtKB: A0A8C0L5F0 (UniProtKB/TrEMBL),   A0A8C0M081 (UniProtKB/TrEMBL),   A0A8I3MEY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845000273   ⟸   ENSCAFT00845000401


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000023667 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001836 UniProtKB/TrEMBL
  ENSCAFG00040002056 UniProtKB/TrEMBL
  ENSCAFG00845000271 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000036521.4 UniProtKB/TrEMBL
  ENSCAFT00030003337.1 UniProtKB/TrEMBL
  ENSCAFT00040003904.1 UniProtKB/TrEMBL
  ENSCAFT00845000401 ENTREZGENE
  ENSCAFT00845000401.1 UniProtKB/TrEMBL
InterPro TEX46-like UniProtKB/TrEMBL
KEGG Report cfa:106557757 UniProtKB/TrEMBL
NCBI Gene C2H1orf234 ENTREZGENE
PANTHER PTHR39412 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 46 UniProtKB/TrEMBL
Pfam DUF5531 UniProtKB/TrEMBL
UniProt A0A8C0L5F0 ENTREZGENE
  A0A8C0M081 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MEY4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NM06_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47279 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 TEX46  testis expressed 46  C2H1orf234  chromosome 2 C1orf234 homolog  Symbol and/or name change 5135510 APPROVED