TEX46 (testis expressed 46) - Rat Genome Database

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Gene: TEX46 (testis expressed 46) Chlorocebus sabaeus
Analyze
Symbol: TEX46
Name: testis expressed 46
RGD ID: 18664315
Description: ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C20H1orf234; chromosome 20 C1orf234 homolog; testis-expressed protein 46; uncharacterized protein C1orf234 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120109,663,661 - 109,667,001 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20109,663,788 - 109,666,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660336,651,463 - 6,654,706 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
TEX46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120109,663,661 - 109,667,001 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20109,663,788 - 109,666,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660336,651,463 - 6,654,706 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TEX46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38123,010,834 - 23,015,852 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl123,010,834 - 23,019,100 (-)EnsemblGRCh38hg38GRCh38
GRCh37123,337,327 - 23,342,345 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36123,209,914 - 23,214,930 (-)NCBINCBI36Build 36hg18NCBI36
Celera121,659,454 - 21,664,468 (-)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef121,581,524 - 21,586,549 (-)NCBIHuRef
CHM1_1123,450,058 - 23,455,074 (-)NCBICHM1_1
T2T-CHM13v2.0122,836,535 - 22,841,556 (-)NCBIT2T-CHM13v2.0
Tex46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,334,313 - 136,340,590 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,337,748 - 136,340,537 (+)EnsemblGRCm39 Ensembl
GRCm384136,607,091 - 136,613,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,610,437 - 136,613,226 (+)EnsemblGRCm38mm10GRCm38
MGSCv374136,166,352 - 136,169,128 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364135,882,513 - 135,885,289 (+)NCBIMGSCv36mm8
MGSCv364134,199,037 - 134,201,450 (+)NCBIMGSCv36mm8
Celera4134,804,760 - 134,805,010 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map468.92NCBI
Tex46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85154,132,763 - 154,137,196 (+)NCBIGRCr8
mRatBN7.25148,849,307 - 148,853,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5148,849,307 - 148,853,742 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5151,546,825 - 151,551,274 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05153,321,111 - 153,325,560 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05153,303,119 - 153,307,568 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05154,976,211 - 154,980,671 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5154,976,165 - 154,980,712 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05158,741,388 - 158,745,510 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45155,370,254 - 155,375,025 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15155,380,405 - 155,385,064 (+)NCBI
Celera5147,249,671 - 147,254,123 (+)NCBICelera
Cytogenetic Map5q36NCBI
Tex46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554523,037,753 - 3,041,356 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554523,038,467 - 3,041,193 (-)NCBIChiLan1.0ChiLan1.0
TEX46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21203,930,781 - 203,936,807 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11203,033,780 - 203,038,973 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0122,196,601 - 22,200,839 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1123,144,251 - 23,147,573 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl123,144,318 - 23,149,172 (-)Ensemblpanpan1.1panPan2
TEX46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,380,574 - 76,383,485 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,379,803 - 76,383,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha272,885,402 - 72,888,316 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,938,982 - 76,941,893 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,939,079 - 76,941,819 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,760,872 - 73,763,778 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,769,078 - 74,771,991 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,772,550 - 75,775,461 (+)NCBIUU_Cfam_GSD_1.0
Tex46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,423,679 - 42,426,579 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364748,248,501 - 8,251,233 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl680,896,647 - 80,898,927 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1680,896,029 - 80,898,954 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2674,931,982 - 74,934,969 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tex46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247647,658,314 - 7,661,438 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 11
Below cutoff 11 8 22

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000017615   ⟹   ENSCSAP00000017089
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl20109,663,788 - 109,666,932 (+)Ensembl
RefSeq Acc Id: XM_007980099   ⟹   XP_007978290
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.120109,663,661 - 109,667,001 (+)NCBI
Vero_WHO_p1.0NW_0236660336,651,463 - 6,654,706 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007978290 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017089.1
Reference Protein Sequences
RefSeq Acc Id: XP_007978290   ⟸   XM_007980099
RefSeq Acc Id: ENSCSAP00000017089   ⟸   ENSCSAT00000017615


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000918 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017615.1 UniProtKB/TrEMBL
InterPro TEX46-like UniProtKB/TrEMBL
NCBI Gene TEX46 ENTREZGENE
PANTHER PTHR39412 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 46 UniProtKB/TrEMBL
Pfam DUF5531 UniProtKB/TrEMBL
UniProt A0A0D9S8A0_CHLSB UniProtKB/TrEMBL