C9H17orf58 (chromosome 9 C17orf58 homolog) - Rat Genome Database

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Gene: C9H17orf58 (chromosome 9 C17orf58 homolog) Canis lupus familiaris
Analyze
Symbol: C9H17orf58 (Ensembl: C17orf58)
Name: chromosome 9 C17orf58 homolog (Ensembl:chromosome 17 open reading frame 58)
RGD ID: 12085372
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome 9 open reading frame, human C17orf58; UPF0450 protein C17orf58 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1912,581,017 - 12,585,900 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl912,584,103 - 12,586,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha913,476,462 - 13,482,207 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0914,239,332 - 14,245,089 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl914,239,361 - 14,244,759 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1913,188,492 - 13,194,232 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0914,340,106 - 14,345,832 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0914,339,089 - 14,344,844 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
C9H17orf58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1912,581,017 - 12,585,900 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl912,584,103 - 12,586,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha913,476,462 - 13,482,207 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0914,239,332 - 14,245,089 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl914,239,361 - 14,244,759 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1913,188,492 - 13,194,232 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0914,340,106 - 14,345,832 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0914,339,089 - 14,344,844 (-)NCBIUU_Cfam_GSD_1.0
C17orf58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381767,991,099 - 67,996,469 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1767,991,099 - 67,996,469 (-)EnsemblGRCh38hg38GRCh38
GRCh371765,987,215 - 65,992,585 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361763,417,679 - 63,420,227 (-)NCBINCBI36Build 36hg18NCBI36
Celera1762,556,881 - 62,557,883 (-)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1761,371,781 - 61,374,323 (-)NCBIHuRef
CHM1_11766,051,132 - 66,053,549 (-)NCBICHM1_1
T2T-CHM13v2.01768,866,315 - 68,871,697 (-)NCBIT2T-CHM13v2.0
1810010H24Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911106,913,499 - 106,921,269 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11106,916,507 - 106,921,269 (+)EnsemblGRCm39 Ensembl
GRCm3811107,023,269 - 107,030,443 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,025,681 - 107,030,443 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711106,889,537 - 106,891,757 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611106,841,984 - 106,846,537 (+)NCBIMGSCv36mm8
Celera11118,761,694 - 118,763,914 (+)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.1NCBI
C10h17orf58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81092,472,779 - 92,477,330 (+)NCBIGRCr8
mRatBN7.21091,972,938 - 91,977,606 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1091,972,410 - 91,977,602 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1097,031,045 - 97,035,552 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01096,494,214 - 96,498,721 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01091,895,508 - 91,900,015 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01095,240,314 - 95,245,146 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1095,242,986 - 95,245,139 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01094,980,600 - 94,985,413 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41096,383,794 - 96,385,947 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1090,640,991 - 90,643,144 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
LOC102019628
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554329,347,128 - 9,347,594 (+)NCBIChiLan1.0ChiLan1.0
C19H17orf58
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21984,014,944 - 84,020,300 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11788,836,085 - 88,841,430 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01761,923,775 - 61,929,098 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11767,118,249 - 67,120,596 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1767,118,249 - 67,120,596 (-)Ensemblpanpan1.1panPan2
CUNH17orf58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560213,937,377 - 13,941,962 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365415,255,369 - 5,257,221 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C12H17orf58
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1214,259,206 - 14,264,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11214,259,203 - 14,261,679 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH17orf58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11653,470,937 - 53,473,347 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1653,471,010 - 53,474,674 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607724,411,899 - 24,417,258 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH17orf58
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624870483,374 - 485,430 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C9H17orf58
59 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 13 1 1 6 12 10 6
Low 5 3 9 5 6 5 4 8
Below cutoff 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005624266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038485193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038676053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038676054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038676055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000039671   ⟹   ENSCAFP00000035554
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl912,584,103 - 12,586,303 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043144   ⟹   ENSCAFP00845033825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl914,239,361 - 14,244,759 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043218   ⟹   ENSCAFP00845033882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl914,239,361 - 14,244,759 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043268   ⟹   ENSCAFP00845033913
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl914,241,146 - 14,244,759 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043313   ⟹   ENSCAFP00845033944
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl914,241,164 - 14,244,759 (+)Ensembl
RefSeq Acc Id: XM_038485193   ⟹   XP_038341121
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1913,188,492 - 13,194,232 (+)NCBI
RefSeq Acc Id: XM_038546840   ⟹   XP_038402768
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0914,339,089 - 14,344,843 (-)NCBI
RefSeq Acc Id: XM_038546841   ⟹   XP_038402769
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0914,339,089 - 14,344,844 (-)NCBI
RefSeq Acc Id: XM_038546844   ⟹   XP_038402772
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0914,339,089 - 14,344,823 (-)NCBI
RefSeq Acc Id: XM_038610815   ⟹   XP_038466743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0914,340,106 - 14,345,831 (-)NCBI
RefSeq Acc Id: XM_038610816   ⟹   XP_038466744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0914,340,106 - 14,345,832 (-)NCBI
RefSeq Acc Id: XM_038610817   ⟹   XP_038466745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0914,340,106 - 14,345,811 (-)NCBI
RefSeq Acc Id: XM_038627929   ⟹   XP_038483857
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha913,476,462 - 13,482,207 (+)NCBI
RefSeq Acc Id: XM_038627936   ⟹   XP_038483864
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha913,476,463 - 13,482,207 (+)NCBI
RefSeq Acc Id: XM_038627945   ⟹   XP_038483873
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha913,476,484 - 13,482,207 (+)NCBI
RefSeq Acc Id: XM_038676053   ⟹   XP_038531981
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0914,239,332 - 14,245,089 (+)NCBI
RefSeq Acc Id: XM_038676054   ⟹   XP_038531982
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0914,239,333 - 14,245,089 (+)NCBI
RefSeq Acc Id: XM_038676055   ⟹   XP_038531983
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0914,239,354 - 14,245,089 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000035554   ⟸   ENSCAFT00000039671
RefSeq Acc Id: XP_038341121   ⟸   XM_038485193
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038466744   ⟸   XM_038610816
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038466743   ⟸   XM_038610815
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038466745   ⟸   XM_038610817
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038531981   ⟸   XM_038676053
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RLS9 (UniProtKB/TrEMBL),   A0A8I3PMP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531982   ⟸   XM_038676054
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RLS9 (UniProtKB/TrEMBL),   A0A8I3PMP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531983   ⟸   XM_038676055
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038483857   ⟸   XM_038627929
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RLS9 (UniProtKB/TrEMBL),   A0A8I3PMP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038483864   ⟸   XM_038627936
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RLS9 (UniProtKB/TrEMBL),   A0A8I3PMP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038483873   ⟸   XM_038627945
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038402769   ⟸   XM_038546841
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RLS9 (UniProtKB/TrEMBL),   A0A8I3PMP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402768   ⟸   XM_038546840
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RLS9 (UniProtKB/TrEMBL),   A0A8I3PMP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402772   ⟸   XM_038546844
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845033825   ⟸   ENSCAFT00845043144
RefSeq Acc Id: ENSCAFP00845033944   ⟸   ENSCAFT00845043313
RefSeq Acc Id: ENSCAFP00845033913   ⟸   ENSCAFT00845043268
RefSeq Acc Id: ENSCAFP00845033882   ⟸   ENSCAFT00845043218
Protein Domains
NTR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025493 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016658 UniProtKB/TrEMBL
  ENSCAFG00845024432 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000039671.4 UniProtKB/TrEMBL
  ENSCAFT00000104770.1 UniProtKB/TrEMBL
  ENSCAFT00000105129.1 UniProtKB/TrEMBL
  ENSCAFT00000106089.1 UniProtKB/TrEMBL
  ENSCAFT00000107052.1 UniProtKB/TrEMBL
  ENSCAFT00030030717.1 UniProtKB/TrEMBL
  ENSCAFT00030030757.1 UniProtKB/TrEMBL
  ENSCAFT00030030792.1 UniProtKB/TrEMBL
  ENSCAFT00030030892.1 UniProtKB/TrEMBL
  ENSCAFT00845043144 ENTREZGENE
  ENSCAFT00845043144.1 UniProtKB/TrEMBL
  ENSCAFT00845043218 ENTREZGENE
  ENSCAFT00845043218.1 UniProtKB/TrEMBL
  ENSCAFT00845043268.1 UniProtKB/TrEMBL
  ENSCAFT00845043313.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.120 UniProtKB/TrEMBL
InterPro Netrin_domain UniProtKB/TrEMBL
  TIMP-like_OB-fold UniProtKB/TrEMBL
NCBI Gene C9H17orf58 ENTREZGENE
PANTHER UPF0450 PROTEIN C17ORF58 UniProtKB/TrEMBL
  UPF0450 PROTEIN C17ORF58 UniProtKB/TrEMBL
PROSITE NTR UniProtKB/TrEMBL
Superfamily-SCOP SSF50242 UniProtKB/TrEMBL
UniProt A0A8C0NHD6_CANLF UniProtKB/TrEMBL
  A0A8C0NPQ8_CANLF UniProtKB/TrEMBL
  A0A8C0NPW9_CANLF UniProtKB/TrEMBL
  A0A8C0RLS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PHU6_CANLF UniProtKB/TrEMBL
  A0A8I3PMP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PRL1_CANLF UniProtKB/TrEMBL
  A0A8I3PWE1_CANLF UniProtKB/TrEMBL
  A0A8P0TL09_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0TUW7 UniProtKB/TrEMBL
VGNC ID VGNC:51926 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 C9H17orf58  chromosome 9 C17orf58 homolog    chromosome 9 open reading frame, human C17orf58  Symbol and/or name change 5135510 APPROVED