NOL7 (nucleolar protein 7) - Rat Genome Database

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Gene: NOL7 (nucleolar protein 7) Canis lupus familiaris
Analyze
Symbol: NOL7 (Ensembl: SIRT5)
Name: nucleolar protein 7 (Ensembl:sirtuin 5)
RGD ID: 12066928
Description: ENCODES a protein that exhibits metal ion binding (inferred); NAD+ binding (inferred); NAD-dependent protein lysine deacetylase activity (inferred); INVOLVED IN maturation of SSU-rRNA (ortholog); ribosomal small subunit biogenesis (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); small-subunit processome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13513,058,894 - 13,063,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3513,017,397 - 13,063,022 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3513,008,242 - 13,012,362 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03513,157,389 - 13,161,539 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3513,115,780 - 13,179,805 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13512,982,835 - 12,986,958 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03513,034,346 - 13,038,501 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03514,359,355 - 14,363,470 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NOL7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13513,058,894 - 13,063,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3513,017,397 - 13,063,022 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3513,008,242 - 13,012,362 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03513,157,389 - 13,161,539 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3513,115,780 - 13,179,805 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13512,982,835 - 12,986,958 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03513,034,346 - 13,038,501 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03514,359,355 - 14,363,470 (+)NCBIUU_Cfam_GSD_1.0
NOL7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38613,615,335 - 13,632,470 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl613,615,335 - 13,632,739 (+)EnsemblGRCh38hg38GRCh38
GRCh37613,615,567 - 13,632,702 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36613,723,538 - 13,729,106 (+)NCBINCBI36Build 36hg18NCBI36
Build 34613,723,537 - 13,729,105NCBI
Celera614,855,054 - 14,860,622 (+)NCBICelera
Cytogenetic Map6p23NCBI
HuRef613,559,935 - 13,565,503 (+)NCBIHuRef
CHM1_1613,617,926 - 13,623,494 (+)NCBICHM1_1
T2T-CHM13v2.0613,488,892 - 13,506,009 (+)NCBIT2T-CHM13v2.0
Nol7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391343,551,852 - 43,556,334 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1343,551,866 - 43,560,573 (+)EnsemblGRCm39 Ensembl
GRCm381343,398,376 - 43,402,858 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1343,398,390 - 43,407,097 (+)EnsemblGRCm38mm10GRCm38
MGSCv371343,493,745 - 43,498,227 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361343,409,365 - 43,413,835 (+)NCBIMGSCv36mm8
Celera1344,476,966 - 44,481,446 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1321.6NCBI
Nol7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81721,509,605 - 21,512,879 (-)NCBIGRCr8
mRatBN7.21721,303,650 - 21,306,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1721,302,624 - 21,307,431 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1721,192,465 - 21,195,737 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01722,796,134 - 22,799,406 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01721,119,568 - 21,122,840 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01724,016,939 - 24,020,231 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1724,015,982 - 24,020,261 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01725,966,367 - 25,969,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41727,127,979 - 27,132,484 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1721,001,063 - 21,004,415 (-)NCBICelera
Cytogenetic Map17p14NCBI
Nol7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554651,123,518 - 1,127,433 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554651,123,455 - 1,127,529 (-)NCBIChiLan1.0ChiLan1.0
NOL7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2528,265,810 - 28,274,470 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1624,259,266 - 24,265,288 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0613,460,225 - 13,466,230 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1613,828,474 - 13,837,472 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl613,831,493 - 13,836,712 (+)Ensemblpanpan1.1panPan2
Nol7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494611,509,818 - 11,514,513 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936552217,340 - 222,420 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936552217,197 - 221,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOL7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl79,971,209 - 9,983,827 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.179,969,483 - 9,978,117 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NOL7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11758,528,431 - 58,532,563 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1758,528,500 - 58,532,533 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604413,665,438 - 13,679,174 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nol7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475612,673,398 - 12,677,173 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475612,673,328 - 12,677,223 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NOL7
79 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000015619   ⟹   ENSCAFP00000014453
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3513,017,397 - 13,048,641 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000015639   ⟹   ENSCAFP00000014473
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3513,058,926 - 13,062,918 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000070458   ⟹   ENSCAFP00000051336
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3513,017,397 - 13,055,655 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000071348   ⟹   ENSCAFP00000057383
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3513,017,397 - 13,062,978 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000075926   ⟹   ENSCAFP00000045848
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3513,017,397 - 13,051,453 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000084177   ⟹   ENSCAFP00000058260
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3513,017,397 - 13,063,022 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000086764   ⟹   ENSCAFP00000058814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3513,017,397 - 13,055,655 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845039253   ⟹   ENSCAFP00845030745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3513,115,780 - 13,161,883 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845039386   ⟹   ENSCAFP00845030862
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3513,115,780 - 13,154,165 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845039458   ⟹   ENSCAFP00845030920
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3513,115,780 - 13,154,165 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845039531   ⟹   ENSCAFP00845030982
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3513,115,780 - 13,147,120 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845039631   ⟹   ENSCAFP00845031045
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3513,157,387 - 13,179,805 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845039714   ⟹   ENSCAFP00845031108
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3513,157,387 - 13,161,859 (+)Ensembl
RefSeq Acc Id: XM_038446410   ⟹   XP_038302338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03513,157,389 - 13,161,539 (+)NCBI
RefSeq Acc Id: XM_038520563   ⟹   XP_038376491
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13512,982,835 - 12,986,958 (+)NCBI
RefSeq Acc Id: XM_038584199   ⟹   XP_038440127
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03514,359,355 - 14,363,470 (+)NCBI
RefSeq Acc Id: XM_038648609   ⟹   XP_038504537
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03513,034,346 - 13,038,501 (+)NCBI
RefSeq Acc Id: XM_535892   ⟹   XP_535892
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13513,058,894 - 13,063,367 (+)NCBI
Dog10K_Boxer_Tasha3513,008,242 - 13,012,362 (+)NCBI
Sequence:
RefSeq Acc Id: XP_535892   ⟸   XM_535892
- UniProtKB: A0A8C0SYF7 (UniProtKB/TrEMBL),   A0A8I3PF70 (UniProtKB/TrEMBL),   A0A8P0SEX6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000014473   ⟸   ENSCAFT00000015639
Ensembl Acc Id: ENSCAFP00000014453   ⟸   ENSCAFT00000015619
Ensembl Acc Id: ENSCAFP00000058260   ⟸   ENSCAFT00000084177
Ensembl Acc Id: ENSCAFP00000051336   ⟸   ENSCAFT00000070458
Ensembl Acc Id: ENSCAFP00000058814   ⟸   ENSCAFT00000086764
Ensembl Acc Id: ENSCAFP00000045848   ⟸   ENSCAFT00000075926
Ensembl Acc Id: ENSCAFP00000057383   ⟸   ENSCAFT00000071348
RefSeq Acc Id: XP_038376491   ⟸   XM_038520563
RefSeq Acc Id: XP_038504537   ⟸   XM_038648609
RefSeq Acc Id: XP_038302338   ⟸   XM_038446410
- UniProtKB: A0A8C0SYF7 (UniProtKB/TrEMBL),   A0A8I3PF70 (UniProtKB/TrEMBL),   A0A8P0SEX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038440127   ⟸   XM_038584199
- UniProtKB: A0A8C0KLA5 (UniProtKB/TrEMBL),   A0A8C0MSK2 (UniProtKB/TrEMBL),   A0A8P0SEX6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845030745   ⟸   ENSCAFT00845039253
Ensembl Acc Id: ENSCAFP00845031108   ⟸   ENSCAFT00845039714
Ensembl Acc Id: ENSCAFP00845030920   ⟸   ENSCAFT00845039458
Ensembl Acc Id: ENSCAFP00845031045   ⟸   ENSCAFT00845039631
Ensembl Acc Id: ENSCAFP00845030862   ⟸   ENSCAFT00845039386
Ensembl Acc Id: ENSCAFP00845030982   ⟸   ENSCAFT00845039531
Promoters
RGD ID:13688973
Promoter ID:EPDNEW_C7040
Type:initiation region
Name:NOL7_1
Description:nucleolar protein 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13513,058,903 - 13,058,963EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009838 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00000053478 UniProtKB/TrEMBL
  ENSCAFG00030007646 UniProtKB/TrEMBL
  ENSCAFG00040017775 UniProtKB/TrEMBL
  ENSCAFG00845022235 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015619.5 UniProtKB/TrEMBL
  ENSCAFT00000015639.5 UniProtKB/TrEMBL
  ENSCAFT00030014313.1 UniProtKB/TrEMBL
  ENSCAFT00030014417.1 UniProtKB/TrEMBL
  ENSCAFT00040033161.1 UniProtKB/TrEMBL
  ENSCAFT00040033214.1 UniProtKB/TrEMBL
  ENSCAFT00845039253.1 UniProtKB/TrEMBL
  ENSCAFT00845039531.1 UniProtKB/TrEMBL
  ENSCAFT00845039631.1 UniProtKB/TrEMBL
  ENSCAFT00845039714 ENTREZGENE
  ENSCAFT00845039714.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1600.10 UniProtKB/TrEMBL
  TPP-binding domain UniProtKB/TrEMBL
InterPro DHS-like_NAD/FAD-binding_dom UniProtKB/TrEMBL
  NAD-dep_sirtuin_deacylases UniProtKB/TrEMBL
  NOL7 UniProtKB/TrEMBL
  NOL7_C UniProtKB/TrEMBL
  Sirtuin UniProtKB/TrEMBL
  Sirtuin_cat_small_dom_sf UniProtKB/TrEMBL
  Sirtuin_class_III UniProtKB/TrEMBL
  Ssirtuin_cat_dom UniProtKB/TrEMBL
KEGG Report cfa:478727 UniProtKB/TrEMBL
NCBI Gene NOL7 ENTREZGENE
PANTHER NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL UniProtKB/TrEMBL
  NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED UniProtKB/TrEMBL
  NUCLEOLAR PROTEIN 7 UniProtKB/TrEMBL
  PTHR32337 UniProtKB/TrEMBL
Pfam NUC129 UniProtKB/TrEMBL
  SIR2 UniProtKB/TrEMBL
PROSITE SIRTUIN UniProtKB/TrEMBL
Superfamily-SCOP SSF52467 UniProtKB/TrEMBL
UniProt A0A8C0KLA5 ENTREZGENE
  A0A8C0MSK2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RF44_CANLF UniProtKB/TrEMBL
  A0A8C0SYF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T0I5_CANLF UniProtKB/TrEMBL
  A0A8I3PBJ6_CANLF UniProtKB/TrEMBL
  A0A8I3PE12_CANLF UniProtKB/TrEMBL
  A0A8I3PF70 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PP51_CANLF UniProtKB/TrEMBL
  A0A8P0SEX6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43884 ENTREZGENE