Nol7 (nucleolar protein 7) - Rat Genome Database

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Gene: Nol7 (nucleolar protein 7) Mus musculus
Analyze
Symbol: Nol7
Name: nucleolar protein 7
RGD ID: 1558496
MGI Page MGI
Description: Predicted to be involved in maturation of SSU-rRNA. Predicted to be located in chromosome and mitochondrion. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in central nervous system and retina. Orthologous to human NOL7 (nucleolar protein 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210008F15Rik; 5730556I21Rik; NO; NOP27; RAR; RARG-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391343,551,852 - 43,556,334 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1343,551,866 - 43,560,573 (+)EnsemblGRCm39 Ensembl
GRCm381343,398,376 - 43,402,858 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1343,398,390 - 43,407,097 (+)EnsemblGRCm38mm10GRCm38
MGSCv371343,493,745 - 43,498,227 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361343,409,365 - 43,413,835 (+)NCBIMGSCv36mm8
Celera1344,476,966 - 44,481,446 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1321.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15226823   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  
PMID:32325033  


Genomics

Comparative Map Data
Nol7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391343,551,852 - 43,556,334 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1343,551,866 - 43,560,573 (+)EnsemblGRCm39 Ensembl
GRCm381343,398,376 - 43,402,858 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1343,398,390 - 43,407,097 (+)EnsemblGRCm38mm10GRCm38
MGSCv371343,493,745 - 43,498,227 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361343,409,365 - 43,413,835 (+)NCBIMGSCv36mm8
Celera1344,476,966 - 44,481,446 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1321.6NCBI
NOL7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38613,615,335 - 13,632,470 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl613,615,335 - 13,632,739 (+)EnsemblGRCh38hg38GRCh38
GRCh37613,615,567 - 13,632,702 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36613,723,538 - 13,729,106 (+)NCBINCBI36Build 36hg18NCBI36
Build 34613,723,537 - 13,729,105NCBI
Celera614,855,054 - 14,860,622 (+)NCBICelera
Cytogenetic Map6p23NCBI
HuRef613,559,935 - 13,565,503 (+)NCBIHuRef
CHM1_1613,617,926 - 13,623,494 (+)NCBICHM1_1
T2T-CHM13v2.0613,488,892 - 13,506,009 (+)NCBIT2T-CHM13v2.0
Nol7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81721,509,605 - 21,512,879 (-)NCBIGRCr8
mRatBN7.21721,303,650 - 21,306,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1721,302,624 - 21,307,431 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1721,192,465 - 21,195,737 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01722,796,134 - 22,799,406 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01721,119,568 - 21,122,840 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01724,016,939 - 24,020,231 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1724,015,982 - 24,020,261 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01725,966,367 - 25,969,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41727,127,979 - 27,132,484 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1721,001,063 - 21,004,415 (-)NCBICelera
Cytogenetic Map17p14NCBI
Nol7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554651,123,518 - 1,127,433 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554651,123,455 - 1,127,529 (-)NCBIChiLan1.0ChiLan1.0
NOL7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2528,265,810 - 28,274,470 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1624,259,266 - 24,265,288 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0613,460,225 - 13,466,230 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1613,828,474 - 13,837,472 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl613,831,493 - 13,836,712 (+)Ensemblpanpan1.1panPan2
NOL7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13513,058,894 - 13,063,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3513,017,397 - 13,063,022 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3513,008,242 - 13,012,362 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03513,157,389 - 13,161,539 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3513,115,780 - 13,179,805 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13512,982,835 - 12,986,958 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03513,034,346 - 13,038,501 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03514,359,355 - 14,363,470 (+)NCBIUU_Cfam_GSD_1.0
Nol7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494611,509,818 - 11,514,513 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936552217,340 - 222,420 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936552217,197 - 221,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOL7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl79,971,209 - 9,983,827 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.179,969,483 - 9,978,117 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NOL7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11758,528,431 - 58,532,563 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1758,528,500 - 58,532,533 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604413,665,438 - 13,679,174 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nol7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475612,673,398 - 12,677,173 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475612,673,328 - 12,677,223 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nol7
223 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:287
Count of miRNA genes:215
Interacting mature miRNAs:246
Transcripts:ENSMUST00000071926
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
10402494Igmsc1_mimmunoglobulin M secreting cells 1 (mouse)Not determined131716854544918560Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse

Markers in Region
RH133329  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381343,401,314 - 43,401,574UniSTSGRCm38
MGSCv371343,496,683 - 43,496,943UniSTSGRCm37
Celera1344,479,902 - 44,480,162UniSTS
Cytogenetic Map13A4UniSTS
EST8F3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381343,401,330 - 43,401,795UniSTSGRCm38
MGSCv371343,496,699 - 43,497,164UniSTSGRCm37
Celera1344,479,918 - 44,480,383UniSTS
Cytogenetic Map13A4UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000071926   ⟹   ENSMUSP00000071818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,551,866 - 43,556,337 (+)Ensembl
GRCm38.p6 Ensembl1343,398,390 - 43,402,861 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220997
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,552,111 - 43,553,045 (+)Ensembl
GRCm38.p6 Ensembl1343,398,635 - 43,399,569 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,554,161 - 43,555,470 (+)Ensembl
GRCm38.p6 Ensembl1343,400,685 - 43,401,994 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,554,469 - 43,555,570 (+)Ensembl
GRCm38.p6 Ensembl1343,400,993 - 43,402,094 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222499   ⟹   ENSMUSP00000152581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,551,868 - 43,555,111 (+)Ensembl
GRCm38.p6 Ensembl1343,398,392 - 43,401,635 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222754   ⟹   ENSMUSP00000152886
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,554,806 - 43,560,573 (+)Ensembl
GRCm38.p6 Ensembl1343,401,330 - 43,407,097 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,554,523 - 43,555,538 (+)Ensembl
GRCm38.p6 Ensembl1343,401,047 - 43,402,062 (+)Ensembl
RefSeq Acc Id: NM_023554   ⟹   NP_076043
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391343,551,852 - 43,556,334 (+)NCBI
GRCm381343,398,376 - 43,402,858 (+)ENTREZGENE
MGSCv371343,493,745 - 43,498,227 (+)RGD
Celera1344,476,966 - 44,481,446 (+)RGD
cM Map13 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_076043   ⟸   NM_023554
- UniProtKB: Q9CY79 (UniProtKB/Swiss-Prot),   Q9JJE2 (UniProtKB/Swiss-Prot),   Q9D7Z3 (UniProtKB/Swiss-Prot),   A1L3B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000071818   ⟸   ENSMUST00000071926
RefSeq Acc Id: ENSMUSP00000152886   ⟸   ENSMUST00000222754
RefSeq Acc Id: ENSMUSP00000152581   ⟸   ENSMUST00000222499
Protein Domains
Nucleolar protein 7 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D7Z3-F1-model_v2 AlphaFold Q9D7Z3 1-254 view protein structure

Promoters
RGD ID:8680202
Promoter ID:EPDNEW_M18131
Type:multiple initiation site
Name:Nol7_1
Description:Mus musculus nucleolar protein 7 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381343,398,382 - 43,398,442EPDNEW
RGD ID:6824193
Promoter ID:MM_KWN:13934
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_023554,   UC007QGB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361343,492,766 - 43,493,992 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917328 AgrOrtholog
Ensembl Genes ENSMUSG00000063200 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000071926 ENTREZGENE
  ENSMUST00000071926.5 UniProtKB/Swiss-Prot
  ENSMUST00000222499.2 UniProtKB/Swiss-Prot
  ENSMUST00000222754.2 UniProtKB/TrEMBL
InterPro NOL7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOL7_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70078 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1917328 ENTREZGENE
NCBI Gene 70078 ENTREZGENE
PANTHER NUCLEOLAR PROTEIN 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR32337 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NUC129 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nol7 PhenoGen
UniProt A0A1Y7VMS4_MOUSE UniProtKB/TrEMBL
  A1L3B6 ENTREZGENE, UniProtKB/TrEMBL
  NOL7_MOUSE UniProtKB/Swiss-Prot
  Q9CY79 ENTREZGENE
  Q9D7Z3 ENTREZGENE
  Q9JJE2 ENTREZGENE
UniProt Secondary Q9CY79 UniProtKB/Swiss-Prot
  Q9JJE2 UniProtKB/Swiss-Prot