SNX13 (sorting nexin 13) - Rat Genome Database

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Gene: SNX13 (sorting nexin 13) Canis lupus familiaris
Analyze
Symbol: SNX13
Name: sorting nexin 13
RGD ID: 12061685
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); phosphatidylinositol-3-phosphate binding (inferred); INVOLVED IN positive regulation of GTPase activity (ortholog); PARTICIPATES IN epinephrine signaling pathway via adrenergic receptor beta; G protein mediated signaling pathway via Galphas family; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN early endosome (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin-13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11432,173,630 - 32,291,039 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1432,173,181 - 32,291,039 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1431,631,806 - 31,814,077 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01432,029,511 - 32,211,832 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1432,093,963 - 32,212,176 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11432,133,581 - 32,315,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01431,842,808 - 32,022,596 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01432,159,962 - 32,339,843 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
early endosome  (IEA)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SNX13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11432,173,630 - 32,291,039 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1432,173,181 - 32,291,039 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1431,631,806 - 31,814,077 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01432,029,511 - 32,211,832 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1432,093,963 - 32,212,176 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11432,133,581 - 32,315,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01431,842,808 - 32,022,596 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01432,159,962 - 32,339,843 (-)NCBIUU_Cfam_GSD_1.0
SNX13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38717,790,761 - 17,940,494 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl717,790,761 - 17,940,501 (-)EnsemblGRCh38hg38GRCh38
GRCh37717,830,385 - 17,980,117 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36717,798,181 - 17,946,656 (-)NCBINCBI36Build 36hg18NCBI36
Build 34717,605,697 - 17,753,359NCBI
Celera717,810,453 - 17,960,145 (-)NCBICelera
Cytogenetic Map7p21.1NCBI
HuRef717,715,986 - 17,865,705 (-)NCBIHuRef
CHM1_1717,831,111 - 17,980,807 (-)NCBICHM1_1
T2T-CHM13v2.0717,920,498 - 18,070,184 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2717,883,821 - 18,033,475 (-)NCBI
Snx13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391235,097,191 - 35,197,479 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1235,097,185 - 35,197,478 (+)EnsemblGRCm39 Ensembl
GRCm381235,046,147 - 35,147,480 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1235,047,186 - 35,147,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv371235,731,861 - 35,832,149 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361235,632,289 - 35,730,455 (+)NCBIMGSCv36mm8
Celera1236,470,667 - 36,572,661 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1215.67NCBI
Snx13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8657,478,139 - 57,589,624 (+)NCBIGRCr8
mRatBN7.2651,758,258 - 51,862,260 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl651,753,036 - 51,860,224 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx652,043,476 - 52,146,514 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0652,358,407 - 52,461,434 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0651,814,258 - 51,917,256 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0654,487,626 - 54,591,716 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl654,488,038 - 54,588,778 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0664,111,167 - 64,215,827 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4653,727,055 - 53,827,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1653,729,850 - 53,831,298 (+)NCBI
Celera650,916,785 - 51,016,544 (+)NCBICelera
Cytogenetic Map6q16NCBI
Snx13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541020,792,659 - 20,925,907 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541020,792,659 - 20,925,907 (-)NCBIChiLan1.0ChiLan1.0
SNX13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2622,622,629 - 22,780,507 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1770,947,352 - 71,097,220 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0718,444,092 - 18,593,950 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1717,770,476 - 17,920,114 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl717,749,772 - 17,920,085 (-)Ensemblpanpan1.1panPan2
Snx13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511876,452,244 - 76,594,996 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365464,127,227 - 4,270,473 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365464,127,333 - 4,270,107 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl986,964,045 - 87,086,577 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1986,964,038 - 87,087,200 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2995,996,474 - 96,120,253 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12140,205,205 - 40,356,505 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2140,248,595 - 40,353,239 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604264,161,543 - 64,317,704 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473912,468,372 - 12,589,926 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SNX13
803 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014119020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014119021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014119022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014119023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022427428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022427429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002632985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002632986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000003895   ⟹   ENSCAFP00000003601
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1432,173,181 - 32,291,039 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000066069   ⟹   ENSCAFP00000060037
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1432,176,059 - 32,291,039 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000083548   ⟹   ENSCAFP00000061522
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1432,176,059 - 32,261,909 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845010668   ⟹   ENSCAFP00845008316
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1432,093,963 - 32,212,176 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845010932   ⟹   ENSCAFP00845008529
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1432,094,623 - 32,212,176 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845011016   ⟹   ENSCAFP00845008597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1432,094,623 - 32,212,176 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845011130   ⟹   ENSCAFP00845008682
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1432,094,623 - 32,212,176 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845011238   ⟹   ENSCAFP00845008767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1432,094,623 - 32,212,176 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845011351   ⟹   ENSCAFP00845008864
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1432,094,623 - 32,212,176 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845011454   ⟹   ENSCAFP00845008949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1432,094,623 - 32,211,812 (-)Ensembl
RefSeq Acc Id: XM_014119020   ⟹   XP_013974495
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11432,173,842 - 32,291,038 (-)NCBI
Dog10K_Boxer_Tasha1431,696,922 - 31,814,076 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014119021   ⟹   XP_013974496
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11432,173,842 - 32,291,038 (-)NCBI
Dog10K_Boxer_Tasha1431,696,922 - 31,814,076 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014119022   ⟹   XP_013974497
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11432,173,842 - 32,291,037 (-)NCBI
Dog10K_Boxer_Tasha1431,696,922 - 31,814,076 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014119023   ⟹   XP_013974498
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11432,173,842 - 32,291,038 (-)NCBI
Dog10K_Boxer_Tasha1431,696,922 - 31,814,076 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022427428   ⟹   XP_022283136
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11432,173,630 - 32,291,039 (-)NCBI
Dog10K_Boxer_Tasha1431,696,676 - 31,814,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022427429   ⟹   XP_022283137
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11432,173,833 - 32,243,116 (-)NCBI
Dog10K_Boxer_Tasha1431,696,922 - 31,766,203 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038444893   ⟹   XP_038300821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1431,696,922 - 31,814,076 (-)NCBI
RefSeq Acc Id: XM_038444929   ⟹   XP_038300857
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1431,631,806 - 31,814,077 (-)NCBI
RefSeq Acc Id: XM_038494736   ⟹   XP_038350664
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11432,198,673 - 32,315,781 (-)NCBI
RefSeq Acc Id: XM_038494737   ⟹   XP_038350665
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11432,198,673 - 32,315,781 (-)NCBI
RefSeq Acc Id: XM_038494738   ⟹   XP_038350666
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11432,198,673 - 32,315,781 (-)NCBI
RefSeq Acc Id: XM_038494739   ⟹   XP_038350667
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11432,198,673 - 32,315,781 (-)NCBI
RefSeq Acc Id: XM_038494740   ⟹   XP_038350668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11432,198,673 - 32,315,781 (-)NCBI
RefSeq Acc Id: XM_038494741   ⟹   XP_038350669
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11432,198,427 - 32,315,782 (-)NCBI
RefSeq Acc Id: XM_038494742   ⟹   XP_038350670
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11432,133,581 - 32,315,782 (-)NCBI
RefSeq Acc Id: XM_038494743   ⟹   XP_038350671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11432,198,673 - 32,267,947 (-)NCBI
RefSeq Acc Id: XM_038557019   ⟹   XP_038412947
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01432,222,636 - 32,339,842 (-)NCBI
RefSeq Acc Id: XM_038557020   ⟹   XP_038412948
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01432,222,636 - 32,339,842 (-)NCBI
RefSeq Acc Id: XM_038557021   ⟹   XP_038412949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01432,222,636 - 32,339,842 (-)NCBI
RefSeq Acc Id: XM_038557022   ⟹   XP_038412950
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01432,222,636 - 32,339,842 (-)NCBI
RefSeq Acc Id: XM_038557023   ⟹   XP_038412951
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01432,222,636 - 32,339,842 (-)NCBI
RefSeq Acc Id: XM_038557024   ⟹   XP_038412952
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01432,222,390 - 32,339,843 (-)NCBI
RefSeq Acc Id: XM_038557025   ⟹   XP_038412953
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01432,159,962 - 32,339,843 (-)NCBI
RefSeq Acc Id: XM_038557026   ⟹   XP_038412954
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01432,222,636 - 32,291,918 (-)NCBI
RefSeq Acc Id: XM_038620954   ⟹   XP_038476882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01431,905,476 - 32,022,595 (-)NCBI
RefSeq Acc Id: XM_038620955   ⟹   XP_038476883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01431,905,476 - 32,022,595 (-)NCBI
RefSeq Acc Id: XM_038620956   ⟹   XP_038476884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01431,905,476 - 32,022,595 (-)NCBI
RefSeq Acc Id: XM_038620957   ⟹   XP_038476885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01431,905,476 - 32,022,595 (-)NCBI
RefSeq Acc Id: XM_038620958   ⟹   XP_038476886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01431,905,476 - 32,022,595 (-)NCBI
RefSeq Acc Id: XM_038620959   ⟹   XP_038476887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01431,905,230 - 32,022,596 (-)NCBI
RefSeq Acc Id: XM_038620960   ⟹   XP_038476888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01431,842,808 - 32,022,596 (-)NCBI
RefSeq Acc Id: XM_038620961   ⟹   XP_038476889
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01431,905,476 - 31,974,754 (-)NCBI
RefSeq Acc Id: XM_038686647   ⟹   XP_038542575
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01432,094,627 - 32,211,831 (-)NCBI
RefSeq Acc Id: XM_038686648   ⟹   XP_038542576
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01432,094,627 - 32,211,831 (-)NCBI
RefSeq Acc Id: XM_038686649   ⟹   XP_038542577
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01432,094,627 - 32,211,831 (-)NCBI
RefSeq Acc Id: XM_038686650   ⟹   XP_038542578
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01432,094,627 - 32,211,831 (-)NCBI
RefSeq Acc Id: XM_038686651   ⟹   XP_038542579
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01432,094,627 - 32,211,831 (-)NCBI
RefSeq Acc Id: XM_038686652   ⟹   XP_038542580
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01432,094,381 - 32,211,832 (-)NCBI
RefSeq Acc Id: XM_038686653   ⟹   XP_038542581
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01432,029,511 - 32,211,832 (-)NCBI
RefSeq Acc Id: XM_038686654   ⟹   XP_038542582
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01432,094,627 - 32,163,926 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013974495 (Get FASTA)   NCBI Sequence Viewer  
  XP_013974496 (Get FASTA)   NCBI Sequence Viewer  
  XP_013974497 (Get FASTA)   NCBI Sequence Viewer  
  XP_013974498 (Get FASTA)   NCBI Sequence Viewer  
  XP_022283136 (Get FASTA)   NCBI Sequence Viewer  
  XP_022283137 (Get FASTA)   NCBI Sequence Viewer  
  XP_038300821 (Get FASTA)   NCBI Sequence Viewer  
  XP_038300857 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350664 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350665 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350666 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350667 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350668 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350669 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350670 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350671 (Get FASTA)   NCBI Sequence Viewer  
  XP_038412947 (Get FASTA)   NCBI Sequence Viewer  
  XP_038412948 (Get FASTA)   NCBI Sequence Viewer  
  XP_038412949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038412950 (Get FASTA)   NCBI Sequence Viewer  
  XP_038412951 (Get FASTA)   NCBI Sequence Viewer  
  XP_038412952 (Get FASTA)   NCBI Sequence Viewer  
  XP_038412953 (Get FASTA)   NCBI Sequence Viewer  
  XP_038412954 (Get FASTA)   NCBI Sequence Viewer  
  XP_038476882 (Get FASTA)   NCBI Sequence Viewer  
  XP_038476883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038476884 (Get FASTA)   NCBI Sequence Viewer  
  XP_038476885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038476886 (Get FASTA)   NCBI Sequence Viewer  
  XP_038476887 (Get FASTA)   NCBI Sequence Viewer  
  XP_038476888 (Get FASTA)   NCBI Sequence Viewer  
  XP_038476889 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542575 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542576 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542577 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542578 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542579 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542580 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542581 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542582 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000003601.4
  ENSCAFP00000060037.2
  ENSCAFP00000061522.2
  ENSCAFP00000068908.1
  ENSCAFP00000071641.1
  ENSCAFP00000071822.1
  ENSCAFP00000074090.1
  ENSCAFP00030034164.1
  ENSCAFP00030034301.1
  ENSCAFP00845008316
  ENSCAFP00845008316.1
  ENSCAFP00845008529
  ENSCAFP00845008529.1
  ENSCAFP00845008597.1
  ENSCAFP00845008682.1
  ENSCAFP00845008767.1
  ENSCAFP00845008864.1
  ENSCAFP00845008949
  ENSCAFP00845008949.1
RefSeq Acc Id: XP_013974498   ⟸   XM_014119023
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013974497   ⟸   XM_014119022
- Peptide Label: isoform X4
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL),   A0A8I3N195 (UniProtKB/TrEMBL),   A0A8P0TC16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013974495   ⟸   XM_014119020
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013974496   ⟸   XM_014119021
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022283136   ⟸   XM_022427428
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P1K3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022283137   ⟸   XM_022427429
- Peptide Label: isoform X6
- UniProtKB: A0A8C0JKS1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000061522   ⟸   ENSCAFT00000083548
Ensembl Acc Id: ENSCAFP00000003601   ⟸   ENSCAFT00000003895
Ensembl Acc Id: ENSCAFP00000060037   ⟸   ENSCAFT00000066069
RefSeq Acc Id: XP_038350670   ⟸   XM_038494742
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038350669   ⟸   XM_038494741
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038350667   ⟸   XM_038494739
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038350665   ⟸   XM_038494737
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038350668   ⟸   XM_038494740
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038350664   ⟸   XM_038494736
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038350666   ⟸   XM_038494738
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038350671   ⟸   XM_038494743
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038476888   ⟸   XM_038620960
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038476887   ⟸   XM_038620959
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038476885   ⟸   XM_038620957
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038476883   ⟸   XM_038620955
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038476886   ⟸   XM_038620958
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038476882   ⟸   XM_038620954
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038476884   ⟸   XM_038620956
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038476889   ⟸   XM_038620961
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038542581   ⟸   XM_038686653
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P1K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542580   ⟸   XM_038686652
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P1K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542578   ⟸   XM_038686650
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542576   ⟸   XM_038686648
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542579   ⟸   XM_038686651
- Peptide Label: isoform X4
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL),   A0A8I3N195 (UniProtKB/TrEMBL),   A0A8P0TC16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542575   ⟸   XM_038686647
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542577   ⟸   XM_038686649
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542582   ⟸   XM_038686654
- Peptide Label: isoform X6
- UniProtKB: A0A8C0JKS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300857   ⟸   XM_038444929
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P1K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300821   ⟸   XM_038444893
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412953   ⟸   XM_038557025
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P1K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412952   ⟸   XM_038557024
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P1K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412950   ⟸   XM_038557022
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412948   ⟸   XM_038557020
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412951   ⟸   XM_038557023
- Peptide Label: isoform X4
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL),   A0A8I3N195 (UniProtKB/TrEMBL),   A0A8P0TC16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412947   ⟸   XM_038557019
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412949   ⟸   XM_038557021
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JK92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412954   ⟸   XM_038557026
- Peptide Label: isoform X6
- UniProtKB: A0A8C0JKS1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845008949   ⟸   ENSCAFT00845011454
Ensembl Acc Id: ENSCAFP00845008767   ⟸   ENSCAFT00845011238
Ensembl Acc Id: ENSCAFP00845008864   ⟸   ENSCAFT00845011351
Ensembl Acc Id: ENSCAFP00845008597   ⟸   ENSCAFT00845011016
Ensembl Acc Id: ENSCAFP00845008529   ⟸   ENSCAFT00845010932
Ensembl Acc Id: ENSCAFP00845008682   ⟸   ENSCAFT00845011130
Ensembl Acc Id: ENSCAFP00845008316   ⟸   ENSCAFT00845010668
Protein Domains
PX   PXA   RGS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002467 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030021339 UniProtKB/TrEMBL
  ENSCAFG00845006012 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000003895.5 UniProtKB/TrEMBL
  ENSCAFT00000066069.2 UniProtKB/TrEMBL
  ENSCAFT00000083548.2 UniProtKB/TrEMBL
  ENSCAFT00000103957.1 UniProtKB/TrEMBL
  ENSCAFT00000104498.1 UniProtKB/TrEMBL
  ENSCAFT00000106963.1 UniProtKB/TrEMBL
  ENSCAFT00000108581.1 UniProtKB/TrEMBL
  ENSCAFT00030039173.1 UniProtKB/TrEMBL
  ENSCAFT00030039314.1 UniProtKB/TrEMBL
  ENSCAFT00845010668 ENTREZGENE
  ENSCAFT00845010668.1 UniProtKB/TrEMBL
  ENSCAFT00845010932 ENTREZGENE
  ENSCAFT00845010932.1 UniProtKB/TrEMBL
  ENSCAFT00845011016.1 UniProtKB/TrEMBL
  ENSCAFT00845011130.1 UniProtKB/TrEMBL
  ENSCAFT00845011238.1 UniProtKB/TrEMBL
  ENSCAFT00845011351.1 UniProtKB/TrEMBL
  ENSCAFT00845011454 ENTREZGENE
  ENSCAFT00845011454.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro Phox_assoc UniProtKB/TrEMBL
  PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/TrEMBL
  SNX13_PX UniProtKB/TrEMBL
  SNX13_RGS UniProtKB/TrEMBL
  Sorting_nexin_C UniProtKB/TrEMBL
NCBI Gene SNX13 ENTREZGENE
PANTHER SORTING NEXIN UniProtKB/TrEMBL
  SORTING NEXIN-13 UniProtKB/TrEMBL
Pfam Nexin_C UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
  PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
  PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
SMART PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF48097 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A8C0JK92 ENTREZGENE
  A0A8C0JKS1 ENTREZGENE
  A0A8C0P1K3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PB79_CANLF UniProtKB/TrEMBL
  A0A8I3MUL2_CANLF UniProtKB/TrEMBL
  A0A8I3MUV4_CANLF UniProtKB/TrEMBL
  A0A8I3MY66_CANLF UniProtKB/TrEMBL
  A0A8I3N0N6_CANLF UniProtKB/TrEMBL
  A0A8I3N195 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N1N1_CANLF UniProtKB/TrEMBL
  A0A8I3NDG9_CANLF UniProtKB/TrEMBL
  A0A8P0PLZ9_CANLF UniProtKB/TrEMBL
  A0A8P0PM37_CANLF UniProtKB/TrEMBL
  A0A8P0PQI8_CANLF UniProtKB/TrEMBL
  A0A8P0TC16 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TD83_CANLF UniProtKB/TrEMBL
  A0A8P0TL35_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0N5I5 UniProtKB/TrEMBL
VGNC ID VGNC:46622 ENTREZGENE