TRAPPC1 (trafficking protein particle complex subunit 1)

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Gene: TRAPPC1 (trafficking protein particle complex subunit 1) Pan paniscus

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Symbol:

TRAPPC1

Name:

trafficking protein particle complex subunit 1

RGD ID:

12047970

Description:

INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); vesicle-mediated transport (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); Golgi apparatus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

trafficking protein particle complex 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	15,528,523 - 15,530,355 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	17,494,530 - 17,496,243 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	7,965,454 - 7,967,172 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	7,951,885 - 7,953,654 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	7,951,885 - 7,953,365 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

common variable immunodeficiency (ISO)

Diamond-Blackfan anemia (ISO)

dyskeratosis congenita (ISO)

Li-Fraumeni syndrome (ISO)

very long chain acyl-CoA dehydrogenase deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum to Golgi vesicle-mediated transport (IEA)

vesicle-mediated transport (IEA)

Cellular Component

cytoplasm (IEA)

endoplasmic reticulum (IEA)

Golgi apparatus (IEA)

TRAPP complex (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TRAPPC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	15,528,523 - 15,530,355 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	17,494,530 - 17,496,243 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	7,965,454 - 7,967,172 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	7,951,885 - 7,953,654 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	7,951,885 - 7,953,365 (-)	Ensembl	panpan1.1		panPan2

TRAPPC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	7,930,345 - 7,931,999 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	7,930,345 - 7,932,123 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	7,833,663 - 7,835,317 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	7,774,392 - 7,775,988 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	7,774,391 - 7,775,983	NCBI
Celera	17	7,861,377 - 7,863,031 (-)	NCBI		Celera
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	7,728,261 - 7,729,915 (-)	NCBI		HuRef
CHM1_1	17	7,842,450 - 7,844,104 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	7,835,773 - 7,837,427 (-)	NCBI		T2T-CHM13v2.0

Trappc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	69,214,812 - 69,216,619 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	69,214,806 - 69,216,619 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	69,323,986 - 69,325,793 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	69,323,980 - 69,325,793 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	69,137,488 - 69,139,295 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	69,140,175 - 69,141,988 (+)	NCBI		MGSCv36	mm8
Celera	11	76,277,969 - 76,279,776 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI
cM Map	11	42.51	NCBI

Trappc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	54,544,406 - 54,545,992 (+)	NCBI		GRCr8
mRatBN7.2	10	54,045,598 - 54,047,184 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	54,045,537 - 54,047,331 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	58,707,276 - 58,708,862 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	58,195,890 - 58,197,476 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	53,704,035 - 53,705,621 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	55,924,996 - 55,926,582 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	55,924,938 - 55,926,783 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	55,667,071 - 55,668,657 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	56,117,229 - 56,118,815 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	56,130,805 - 56,132,585 (+)	NCBI
Celera	10	53,202,167 - 53,203,753 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Trappc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	9,011,138 - 9,012,796 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	9,010,936 - 9,012,796 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRAPPC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	32,784,577 - 32,786,060 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	32,784,846 - 32,786,163 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	32,921,414 - 32,923,121 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	32,887,252 - 32,888,959 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	32,887,521 - 32,888,838 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	32,854,947 - 32,856,654 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	32,810,979 - 32,812,686 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	32,990,117 - 32,991,824 (-)	NCBI		UU_Cfam_GSD_1.0

Trappc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	47,698,737 - 47,700,317 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	1,172,943 - 1,174,510 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936595	1,172,957 - 1,174,517 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRAPPC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	53,179,257 - 53,180,981 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	55,545,614 - 55,547,313 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRAPPC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	7,318,771 - 7,320,461 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	7,318,911 - 7,320,343 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	14,087,647 - 14,089,372 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trappc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	10,512,587 - 10,514,213 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	10,512,569 - 10,514,504 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003810057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000034897 ⟹ ENSPPAP00000012235

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	7,951,885 - 7,953,365 (-)	Ensembl

RefSeq Acc Id:

XM_003810057 ⟹ XP_003810105

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	15,528,523 - 15,530,355 (-)	NCBI
NHGRI_mPanPan1	17	17,494,530 - 17,496,243 (-)	NCBI
Mhudiblu_PPA_v0	17	7,965,454 - 7,967,172 (-)	NCBI
PanPan1.1	17	7,951,885 - 7,953,654 (-)	NCBI

Sequence:

show sequence

GCCTGGCCGCGCGTGCGCGGCTCCGGTGGCCACAGATTGGCTGAGGGAGGGAGGCGGAGTCTGA
CAAGCGGCACTGGAGCGGAGTTAATGCCCAGCCGCGGCCGGGTGAGAACCCCCCTAAGGGGCGG
AGCTCCGTGGAAACCGGAAGTAACTCTTGACGGGCACTCGGAGCAGTTCCGATGACTGTCCACA
ACCTGTACCTGTTTGACCGGAATGGAGTGTGTCTGCACTACAGCGAATGGCACCGCAAGAAGCA
AGCAGGGATTCCCAAGGAGGAGGAGTATAAGCTGATGTACGGGATGCTCTTCTCTATCCGCTCG
TTTGTCAGCAAGATGTCCCCGCTAGACATGAAGGATGGCTTCCTGGCCTTCCAAACTAGCCGTT
ACAAACTCCATTACTACGAGACGCCCACTGGGATCAAAGTTGTCATGAATACTGACTTGGGCGT
GGGACCCATCCGAGATGTGCTGCACCACATCTACAGTGCGCTGTATGTGGAGCTGGTGGTGAAG
AATCCCCTGTGCCCGCTGGGCCAAACTGTGCAAAGTGAGCTCTTTCGCTCCCGACTGGACTCCT
ATGTTCGCTCTCTGCCCTTCTTCTCTGCCCGGGCTGGCTGAAGCAACCTACCTCAAGTCTCAGG
AGAATTCATGTCTGCCTGGGGCCCTTCCGAACCTGTGCCAACTAAGGGCCCCCACTGTAAGCCC
CCGCATCCCCACCCCCTGCCCAGAGCAACAGCCTAAAGGCCTGCCCTGATGCTCTCCTCCTACC
AGAGTGAAGCCCACAGAGTCCCTCCACCTCCACACCAGGCCCTCTCTCCAGTTTTATCCCCTGC
CTAATGCTGCGAGAAGCACAGAATAAACTTTTTGTCACTCTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_003810105	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000012235
	ENSPPAP00000012235.1

RefSeq Acc Id:	XP_003810105 ⟸ XM_003810057
- UniProtKB:	A0A2R9A9B1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLAF QTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRS RLDSYVRSLPFFSARAG hide sequence

Ensembl Acc Id:

ENSPPAP00000012235 ⟸ ENSPPAT00000034897

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000029301	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000034897.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.450.70	UniProtKB/TrEMBL
InterPro	Longin-like_dom_sf	UniProtKB/TrEMBL
	TRAPPC	UniProtKB/TrEMBL
KEGG Report	pps:100970624	UniProtKB/TrEMBL
NCBI Gene	TRAPPC1	ENTREZGENE
PANTHER	PTHR23249	UniProtKB/TrEMBL
	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1	UniProtKB/TrEMBL
Pfam	Sybindin	UniProtKB/TrEMBL
SMART	Sybindin	UniProtKB/TrEMBL
Superfamily-SCOP	SSF64356	UniProtKB/TrEMBL
UniProt	A0A2R9A9B1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-02-16	TRAPPC1	trafficking protein particle complex subunit 1	TRAPPC1	trafficking protein particle complex 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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