Trappc1 (trafficking protein particle complex subunit 1) - Rat Genome Database

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Gene: Trappc1 (trafficking protein particle complex subunit 1) Ictidomys tridecemlineatus
Analyze
Symbol: Trappc1
Name: trafficking protein particle complex subunit 1 (Ensembl:trafficking protein particle complex 1)
RGD ID: 12506380
Description: INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); vesicle-mediated transport (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); FOUND IN endoplasmic reticulum (inferred); Golgi apparatus (inferred); TRAPP complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: trafficking protein particle complex 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,698,737 - 47,700,317 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,172,943 - 1,174,510 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,172,957 - 1,174,517 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trappc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,698,737 - 47,700,317 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,172,943 - 1,174,510 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,172,957 - 1,174,517 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAPPC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,930,345 - 7,931,999 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,930,345 - 7,932,123 (-)EnsemblGRCh38hg38GRCh38
GRCh37177,833,663 - 7,835,317 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,774,392 - 7,775,988 (-)NCBINCBI36Build 36hg18NCBI36
Build 34177,774,391 - 7,775,983NCBI
Celera177,861,377 - 7,863,031 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,728,261 - 7,729,915 (-)NCBIHuRef
CHM1_1177,842,450 - 7,844,104 (-)NCBICHM1_1
T2T-CHM13v2.0177,835,773 - 7,837,427 (-)NCBIT2T-CHM13v2.0
Trappc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,214,812 - 69,216,619 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,214,806 - 69,216,619 (+)EnsemblGRCm39 Ensembl
GRCm381169,323,986 - 69,325,793 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,323,980 - 69,325,793 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,137,488 - 69,139,295 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,140,175 - 69,141,988 (+)NCBIMGSCv36mm8
Celera1176,277,969 - 76,279,776 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.51NCBI
Trappc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,544,406 - 54,545,992 (+)NCBIGRCr8
mRatBN7.21054,045,598 - 54,047,184 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,045,537 - 54,047,331 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,707,276 - 58,708,862 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,195,890 - 58,197,476 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,704,035 - 53,705,621 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01055,924,996 - 55,926,582 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,924,938 - 55,926,783 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,667,071 - 55,668,657 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,117,229 - 56,118,815 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,130,805 - 56,132,585 (+)NCBI
Celera1053,202,167 - 53,203,753 (+)NCBICelera
Cytogenetic Map10q24NCBI
Trappc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,011,138 - 9,012,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,010,936 - 9,012,796 (+)NCBIChiLan1.0ChiLan1.0
TRAPPC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,528,523 - 15,530,355 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,494,530 - 17,496,243 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,965,454 - 7,967,172 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,951,885 - 7,953,654 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,951,885 - 7,953,365 (-)Ensemblpanpan1.1panPan2
TRAPPC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,784,577 - 32,786,060 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,784,846 - 32,786,163 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,921,414 - 32,923,121 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,887,252 - 32,888,959 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,887,521 - 32,888,838 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,854,947 - 32,856,654 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,810,979 - 32,812,686 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,990,117 - 32,991,824 (-)NCBIUU_Cfam_GSD_1.0
TRAPPC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11253,179,257 - 53,180,981 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,545,614 - 55,547,313 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRAPPC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,318,771 - 7,320,461 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,318,911 - 7,320,343 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,087,647 - 14,089,372 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trappc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,512,587 - 10,514,213 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,512,569 - 10,514,504 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005332830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000025689   ⟹   ENSSTOP00000016107
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365951,172,943 - 1,174,510 (-)Ensembl
RefSeq Acc Id: XM_005332830   ⟹   XP_005332887
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560247,698,737 - 47,700,317 (-)NCBI
SpeTri2.0NW_0049365951,172,957 - 1,174,517 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332887 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016107.1
GenBank Protein KAG3269908 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005332887   ⟸   XM_005332830
- UniProtKB: I3MVG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000016107   ⟸   ENSSTOT00000025689


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024665 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025689.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.70 UniProtKB/TrEMBL
InterPro Longin-like_dom_sf UniProtKB/TrEMBL
  TRAPPC UniProtKB/TrEMBL
NCBI Gene Trappc1 ENTREZGENE
PANTHER PTHR23249 UniProtKB/TrEMBL
  TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 UniProtKB/TrEMBL
Pfam Sybindin UniProtKB/TrEMBL
SMART Sybindin UniProtKB/TrEMBL
Superfamily-SCOP SSF64356 UniProtKB/TrEMBL
UniProt I3MVG2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-16 Trappc1  trafficking protein particle complex subunit 1  Trappc1  trafficking protein particle complex 1  Symbol and/or name change 5135510 APPROVED