LOC100968898 (cytochrome b5) - Rat Genome Database

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Gene: LOC100968898 (cytochrome b5) Pan paniscus
Analyze
Symbol: LOC100968898 (Ensembl: CYB5A)
Name: cytochrome b5 (Ensembl:cytochrome b5 type A)
RGD ID: 12036854
Description: ENCODES a protein that exhibits enzyme binding (inferred); heme binding (inferred); metal ion binding (inferred); INVOLVED IN response to cadmium ion (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); chromosome 18q deletion syndrome (ortholog); Congenital Methemoglobinemia (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21791,788,331 - 91,827,345 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11877,480,954 - 77,519,968 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01867,638,406 - 67,677,111 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11870,919,329 - 70,957,873 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1870,919,617 - 70,957,732 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100968898
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21791,788,331 - 91,827,345 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11877,480,954 - 77,519,968 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01867,638,406 - 67,677,111 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11870,919,329 - 70,957,873 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1870,919,617 - 70,957,732 (-)Ensemblpanpan1.1panPan2
CYB5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381874,250,846 - 74,291,963 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1874,250,846 - 74,291,973 (-)EnsemblGRCh38hg38GRCh38
GRCh371871,918,081 - 71,959,198 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361870,071,507 - 70,110,201 (-)NCBINCBI36Build 36hg18NCBI36
Build 341870,071,507 - 70,110,201NCBI
Celera1868,787,880 - 68,826,566 (-)NCBICelera
Cytogenetic Map18q22.3NCBI
HuRef1868,652,932 - 68,691,654 (-)NCBIHuRef
CHM1_11871,915,750 - 71,954,471 (-)NCBICHM1_1
T2T-CHM13v2.01874,478,400 - 74,519,513 (-)NCBIT2T-CHM13v2.0
Cyb5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391884,869,463 - 84,897,996 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1884,856,829 - 84,897,996 (+)EnsemblGRCm39 Ensembl
GRCm381884,851,338 - 84,879,871 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1884,838,704 - 84,879,871 (+)EnsemblGRCm38mm10GRCm38
MGSCv371885,020,806 - 85,049,255 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361884,985,607 - 85,014,056 (+)NCBIMGSCv36mm8
Celera1885,916,355 - 85,944,796 (+)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1857.53NCBI
Cyb5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81880,487,923 - 80,520,544 (+)NCBIGRCr8
mRatBN7.21878,213,067 - 78,245,677 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1878,202,342 - 78,258,535 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1814,179,160 - 14,180,288 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1880,316,171 - 80,348,668 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01880,988,228 - 81,020,725 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01878,823,908 - 78,856,406 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01881,694,818 - 81,726,821 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1881,694,808 - 81,726,821 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01880,739,215 - 80,770,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41881,415,972 - 81,452,606 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11881,489,421 - 81,526,056 (+)NCBI
Celera1876,829,153 - 76,861,638 (+)NCBICelera
Cytogenetic Map18q12.3NCBI
LOC102012144
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540257,701,931 - 57,739,163 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540257,701,931 - 57,739,163 (-)NCBIChiLan1.0ChiLan1.0
LOC476167
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115,070,817 - 5,106,668 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15,070,865 - 5,106,932 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0 Ensembl14,881,337 - 4,922,028 (+)EnsemblROS_Cfam_1.0 Ensembl
LOC101960314
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494418,855,437 - 18,885,877 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366164,176,576 - 4,210,276 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYB5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1149,737,571 - 149,773,219 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11149,737,584 - 149,773,222 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21165,902,066 - 165,937,612 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYB5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,599,198 - 5,636,620 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,599,206 - 5,640,012 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606020,247,043 - 20,284,435 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101711375
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248066,399,460 - 6,436,735 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248066,399,708 - 6,434,667 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000032149   ⟹   ENSPPAP00000009506
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1870,919,617 - 70,957,732 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000032153   ⟹   ENSPPAP00000009510
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1870,919,617 - 70,957,732 (-)Ensembl
RefSeq Acc Id: XM_003827294   ⟹   XP_003827342
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21791,788,331 - 91,827,345 (-)NCBI
NHGRI_mPanPan11877,480,954 - 77,519,968 (-)NCBI
Mhudiblu_PPA_v01867,638,406 - 67,677,109 (-)NCBI
PanPan1.11870,919,329 - 70,957,873 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003827342 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009506.1
  ENSPPAP00000009510
  ENSPPAP00000009510.1
RefSeq Acc Id: XP_003827342   ⟸   XM_003827294
- UniProtKB: A0A2R8ZX00 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000009510   ⟸   ENSPPAT00000032153
Ensembl Acc Id: ENSPPAP00000009506   ⟸   ENSPPAT00000032149
Protein Domains
Cytochrome b5 heme-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027983 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032149.1 UniProtKB/TrEMBL
  ENSPPAT00000032153.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.120.10 UniProtKB/TrEMBL
InterPro Cyt_B5-like_heme/steroid-bd UniProtKB/TrEMBL
  Cyt_B5-like_heme/steroid_sf UniProtKB/TrEMBL
  Cyt_B5_heme-BS UniProtKB/TrEMBL
  Cytochrome_b5 UniProtKB/TrEMBL
NCBI Gene LOC100968898 ENTREZGENE
PANTHER CYTOCHROME B5 UniProtKB/TrEMBL
  CYTOCHROME B5 UniProtKB/TrEMBL
Pfam Cyt-b5 UniProtKB/TrEMBL
PRINTS CYTOCHROMEB5 UniProtKB/TrEMBL
PROSITE CYTOCHROME_B5_1 UniProtKB/TrEMBL
  CYTOCHROME_B5_2 UniProtKB/TrEMBL
SMART Cyt-b5 UniProtKB/TrEMBL
Superfamily-SCOP SSF55856 UniProtKB/TrEMBL
UniProt A0A2R8ZWZ8_PANPA UniProtKB/TrEMBL
  A0A2R8ZX00 ENTREZGENE, UniProtKB/TrEMBL