Cyb5a (cytochrome b5 type A (microsomal)) - Rat Genome Database

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Gene: Cyb5a (cytochrome b5 type A (microsomal)) Mus musculus
Analyze
Symbol: Cyb5a
Name: cytochrome b5 type A (microsomal)
RGD ID: 732318
MGI Page MGI
Description: Predicted to enable enzyme binding activity and heme binding activity. Predicted to act upstream of or within fatty acid metabolic process. Located in endoplasmic reticulum. Is expressed in early conceptus. Human ortholog(s) of this gene implicated in methemoglobinemia and methemoglobinemia and ambiguous genitalia. Orthologous to human CYB5A (cytochrome b5 type A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610009N12Rik; Cyb5; cytochrome b-5; cytochrome b5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391884,869,463 - 84,897,996 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1884,856,829 - 84,897,996 (+)EnsemblGRCm39 Ensembl
GRCm381884,851,338 - 84,879,871 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1884,838,704 - 84,879,871 (+)EnsemblGRCm38mm10GRCm38
MGSCv371885,020,806 - 85,049,255 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361884,985,607 - 85,014,056 (+)NCBIMGSCv36mm8
Celera1885,916,355 - 85,944,796 (+)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1857.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2,4-trichlorobenzene  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrabromodibenzodioxine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
2-tert-butylhydroquinone  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-nitroquinoline N-oxide  (ISO)
7,12-dimethyltetraphene  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alfentanil  (ISO)
Allylamine  (ISO)
alpha-hexachlorocyclohexane  (ISO)
ammonium chloride  (ISO)
anthracen-2-amine  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[k]fluoranthene  (EXP)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bromobenzene  (ISO)
calcidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cefaloridine  (ISO)
cetrorelix  (ISO)
chlorzoxazone  (ISO)
cisplatin  (ISO)
citral  (ISO)
clofibrate  (ISO)
clofibric acid  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
cyproconazole  (EXP)
cytarabine  (ISO)
dexamethasone  (EXP,ISO)
dibenz[a,h]anthracene  (ISO)
dibenzofurans  (EXP)
dibutyl phthalate  (ISO)
diethyl maleate  (EXP)
diiodine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
ethanol  (ISO)
ferroheme b  (ISO)
fipronil  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
geranial  (ISO)
geraniol  (ISO)
glycidyl methacrylate  (ISO)
halothane  (ISO)
heme b  (ISO)
hesperetin  (ISO)
hydrogen peroxide  (ISO)
hydroxylamine  (ISO)
indometacin  (ISO)
inulin  (EXP)
isoniazide  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lamivudine  (EXP)
limonene  (ISO)
lycopene  (EXP)
m-xylene  (ISO)
Malotilate  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
metoprolol  (EXP)
N,N-diethyl-m-toluamide  (ISO)
N-Nitrosodi-n-propylamine  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
NADP zwitterion  (ISO)
NADP(+)  (ISO)
naphthalene  (EXP)
nefazodone  (ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenethyl caffeate  (ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
progesterone  (ISO)
propiconazole  (EXP)
Propiverine  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
Rebamipide  (ISO)
resveratrol  (EXP)
SB 431542  (ISO)
silibinin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium perchlorate  (ISO)
Sudan I  (ISO)
sunitinib  (ISO)
tangeretin  (ISO)
taurine  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
testosterone enanthate  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (ISO)
tetracycline  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trovafloxacin  (EXP)
tungsten  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
zidovudine  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zingerone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Membrane-bound cytochrome b5 reductase (methemoglobin reductase) in human erythrocytes. Study in normal and methemoglobinemic subjects. Choury D, etal., J Clin Invest. 1981 Jan;67(1):149-55.
2. Recessive hereditary methemoglobinemia: two novel mutations in the NADH-cytochrome b5 reductase gene. Fermo E, etal., Blood Cells Mol Dis. 2008 Jul-Aug;41(1):50-5. doi: 10.1016/j.bcmd.2008.02.002. Epub 2008 Mar 17.
3. Epidemiological evaluation of recurrent stomatitis, nitrates in drinking water, and cytochrome b5 reductase activity. Gupta SK, etal., Am J Gastroenterol. 1999 Jul;94(7):1808-12.
4. [Disorders of the processes of protein biosynthesis and a decrease in the content of cytochromes P-450 and b5 in the microsomal fraction of rat kidney in the dynamics of development of acute pyelonephritis] Karimov KhIa, etal., Ukr Biokhim Zh. 1998 Jul-Aug;70(4):139-42.
5. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
6. Serine-proline replacement at residue 127 of NADH-cytochrome b5 reductase causes hereditary methemoglobinemia, generalized type. Kobayashi Y, etal., Blood. 1990 Apr 1;75(7):1408-13.
7. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
8. MGDs mouse GO annotations MGD data from the GO Consortium
9. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
10. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
11. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
12. Identification and analysis of genes from the mouse otic vesicle and their association with developmental subprocesses through in situ hybridization. Powles N, etal., Dev Biol 2004 Apr 1;268(1):24-38.
13. Mouse MP Annotation Import Pipeline RGD automated import pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11062064   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14739275   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16916647   PMID:16998848   PMID:18805792   PMID:20676935   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22375059   PMID:22792238   PMID:23460677   PMID:23703616  
PMID:26974035   PMID:30550785   PMID:31006538   PMID:32325033   PMID:32554809   PMID:36417873  


Genomics

Comparative Map Data
Cyb5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391884,869,463 - 84,897,996 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1884,856,829 - 84,897,996 (+)EnsemblGRCm39 Ensembl
GRCm381884,851,338 - 84,879,871 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1884,838,704 - 84,879,871 (+)EnsemblGRCm38mm10GRCm38
MGSCv371885,020,806 - 85,049,255 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361884,985,607 - 85,014,056 (+)NCBIMGSCv36mm8
Celera1885,916,355 - 85,944,796 (+)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1857.53NCBI
CYB5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381874,250,846 - 74,291,963 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1874,250,846 - 74,291,973 (-)EnsemblGRCh38hg38GRCh38
GRCh371871,918,081 - 71,959,198 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361870,071,507 - 70,110,201 (-)NCBINCBI36Build 36hg18NCBI36
Build 341870,071,507 - 70,110,201NCBI
Celera1868,787,880 - 68,826,566 (-)NCBICelera
Cytogenetic Map18q22.3NCBI
HuRef1868,652,932 - 68,691,654 (-)NCBIHuRef
CHM1_11871,915,750 - 71,954,471 (-)NCBICHM1_1
T2T-CHM13v2.01874,478,400 - 74,519,513 (-)NCBIT2T-CHM13v2.0
Cyb5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81880,487,923 - 80,520,544 (+)NCBIGRCr8
mRatBN7.21878,213,067 - 78,245,677 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1878,202,342 - 78,258,535 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1814,179,160 - 14,180,288 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1880,316,171 - 80,348,668 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01880,988,228 - 81,020,725 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01878,823,908 - 78,856,406 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01881,694,818 - 81,726,821 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1881,694,808 - 81,726,821 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01880,739,215 - 80,770,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41881,415,972 - 81,452,606 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11881,489,421 - 81,526,056 (+)NCBI
Celera1876,829,153 - 76,861,638 (+)NCBICelera
Cytogenetic Map18q12.3NCBI
LOC102012144
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540257,701,931 - 57,739,163 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540257,701,931 - 57,739,163 (-)NCBIChiLan1.0ChiLan1.0
LOC100968898
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21791,788,331 - 91,827,345 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11877,480,954 - 77,519,968 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01867,638,406 - 67,677,111 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11870,919,329 - 70,957,873 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1870,919,617 - 70,957,732 (-)Ensemblpanpan1.1panPan2
LOC476167
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115,070,817 - 5,106,668 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15,070,865 - 5,106,932 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0 Ensembl14,881,337 - 4,922,028 (+)EnsemblROS_Cfam_1.0 Ensembl
LOC101960314
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494418,855,437 - 18,885,877 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366164,176,576 - 4,210,276 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYB5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1149,737,571 - 149,773,219 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11149,737,584 - 149,773,222 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21165,902,066 - 165,937,612 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYB5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,599,198 - 5,636,620 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,599,206 - 5,640,012 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606020,247,043 - 20,284,435 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101711375
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248066,399,460 - 6,436,735 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248066,399,708 - 6,434,667 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cyb5a
1055 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:671
Count of miRNA genes:390
Interacting mature miRNAs:440
Transcripts:ENSMUST00000025549, ENSMUST00000159837, ENSMUST00000159846, ENSMUST00000160180, ENSMUST00000163083
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
1301798Hdlq31_mHDL QTL 31 (mouse)Not determined186714438990720763Mouse
10401904Sicd4_mseizure-induced cell death 4 (mouse)Not determined186980527685514143Mouse
15014786Mvlq2_mmacrovesicular liver lesion QTL 2 (mouse)187156938890720763Mouse
4141757Sicd1_mseizure-induced cell death 1 (mouse)Not determined188017526489590914Mouse

Markers in Region
Cyb5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18E4UniSTS
cM Map1855.0UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000025549   ⟹   ENSMUSP00000025549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1884,869,502 - 84,897,717 (+)Ensembl
GRCm38.p6 Ensembl1884,851,377 - 84,879,592 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1884,895,726 - 84,897,989 (+)Ensembl
GRCm38.p6 Ensembl1884,877,601 - 84,879,864 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1884,869,532 - 84,891,707 (+)Ensembl
GRCm38.p6 Ensembl1884,851,407 - 84,873,582 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160180   ⟹   ENSMUSP00000124480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1884,869,463 - 84,897,996 (+)Ensembl
GRCm38.p6 Ensembl1884,851,338 - 84,879,871 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163083   ⟹   ENSMUSP00000124412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1884,870,004 - 84,897,987 (+)Ensembl
GRCm38.p6 Ensembl1884,851,879 - 84,879,862 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1884,873,094 - 84,897,991 (+)Ensembl
GRCm38.p6 Ensembl1884,854,969 - 84,879,866 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1884,856,829 - 84,897,986 (+)Ensembl
GRCm38.p6 Ensembl1884,838,704 - 84,879,861 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236742   ⟹   ENSMUSP00000157603
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1884,869,539 - 84,897,990 (+)Ensembl
GRCm38.p6 Ensembl1884,851,414 - 84,879,865 (+)Ensembl
RefSeq Acc Id: NM_001348159   ⟹   NP_001335088
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391884,869,463 - 84,897,996 (+)NCBI
GRCm381884,851,338 - 84,879,871 (+)NCBI
Sequence:
RefSeq Acc Id: NM_025797   ⟹   NP_080073
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391884,869,463 - 84,897,996 (+)NCBI
GRCm381884,851,338 - 84,879,871 (+)NCBI
MGSCv371885,020,806 - 85,049,255 (+)RGD
Celera1885,916,355 - 85,944,796 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080073   ⟸   NM_025797
- Peptide Label: isoform 1
- UniProtKB: P56395 (UniProtKB/Swiss-Prot),   Q544Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335088   ⟸   NM_001348159
- Peptide Label: isoform 2
- UniProtKB: G5E850 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000124412   ⟸   ENSMUST00000163083
RefSeq Acc Id: ENSMUSP00000157603   ⟸   ENSMUST00000236742
RefSeq Acc Id: ENSMUSP00000124480   ⟸   ENSMUST00000160180
RefSeq Acc Id: ENSMUSP00000025549   ⟸   ENSMUST00000025549
Protein Domains
Cytochrome b5 heme-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P56395-F1-model_v2 AlphaFold P56395 1-134 view protein structure

Promoters
RGD ID:13678302
Promoter ID:EPDNEW_M23300
Type:initiation region
Name:Cyb5a_1
Description:Mus musculus cytochrome b5 type A , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381884,851,414 - 84,851,474EPDNEW
RGD ID:6829168
Promoter ID:MM_KWN:25876
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000076513,   OTTMUST00000076514,   OTTMUST00000076515,   OTTMUST00000080699
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361885,020,281 - 85,020,907 (+)MPROMDB
RGD ID:6829171
Promoter ID:MM_KWN:25878
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver,   Lung
Transcripts:OTTMUST00000076516
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361885,046,101 - 85,047,452 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926952 AgrOrtholog
Ensembl Genes ENSMUSG00000024646 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025549 ENTREZGENE
  ENSMUST00000025549.14 UniProtKB/TrEMBL
  ENSMUST00000160180 ENTREZGENE
  ENSMUST00000160180.9 UniProtKB/Swiss-Prot
  ENSMUST00000163083.2 UniProtKB/TrEMBL
  ENSMUST00000236742.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.120.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cyt_B5-like_heme/steroid-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_B5-like_heme/steroid_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_B5_heme-BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1926952 ENTREZGENE
NCBI Gene 109672 ENTREZGENE
PANTHER CYTOCHROME B5 UniProtKB/Swiss-Prot
  CYTOCHROME B5 UniProtKB/Swiss-Prot
  CYTOCHROME B5 UniProtKB/TrEMBL
  CYTOCHROME B5 UniProtKB/TrEMBL
Pfam Cyt-b5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB CYB5A RGD
PhenoGen Cyb5a PhenoGen
PRINTS CYTOCHROMEB5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CYTOCHROME_B5_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CYTOCHROME_B5_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Cyt-b5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55856 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494B9D8_MOUSE UniProtKB/TrEMBL
  CYB5_MOUSE UniProtKB/Swiss-Prot
  E0CY88_MOUSE UniProtKB/TrEMBL
  G5E850 ENTREZGENE, UniProtKB/TrEMBL
  P56395 ENTREZGENE
  Q544Z9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-05-27 Cyb5a  cytochrome b5 type A (microsomal)  Cyb5  cytochrome b-5  Symbol and/or name change 5135510 APPROVED