PLAC8 (placenta associated 8) - Rat Genome Database

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Gene: PLAC8 (placenta associated 8) Pan paniscus
Analyze
Symbol: PLAC8
Name: placenta associated 8
RGD ID: 12035621
Description: ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN brown fat cell differentiation (ortholog); defense response to bacterium (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH Chlamydiaceae Infections (ortholog); chromosome 4q21 deletion syndrome (ortholog); Escherichia Coli Infections (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: placenta specific 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2346,957,286 - 46,982,509 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1447,146,634 - 47,171,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0441,089,847 - 41,115,061 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1446,939,019 - 46,964,131 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl446,943,940 - 46,964,131 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PLAC8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2346,957,286 - 46,982,509 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1447,146,634 - 47,171,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0441,089,847 - 41,115,061 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1446,939,019 - 46,964,131 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl446,943,940 - 46,964,131 (+)Ensemblpanpan1.1panPan2
PLAC8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38483,090,048 - 83,114,729 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl483,059,493 - 83,137,075 (-)EnsemblGRCh38hg38GRCh38
GRCh37484,011,201 - 84,035,882 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36484,230,867 - 84,254,913 (-)NCBINCBI36Build 36hg18NCBI36
Build 34484,369,019 - 84,393,068NCBI
Celera481,301,714 - 81,326,359 (-)NCBICelera
Cytogenetic Map4q21.22NCBI
HuRef479,752,244 - 79,779,026 (-)NCBIHuRef
CHM1_1483,987,686 - 84,012,382 (-)NCBICHM1_1
T2T-CHM13v2.0486,419,237 - 86,443,896 (-)NCBIT2T-CHM13v2.0
Plac8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395100,699,455 - 100,720,119 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5100,701,591 - 100,720,111 (-)EnsemblGRCm39 Ensembl
GRCm385100,551,589 - 100,572,253 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5100,553,725 - 100,572,245 (-)EnsemblGRCm38mm10GRCm38
MGSCv375100,982,752 - 101,001,224 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365100,794,035 - 100,812,507 (-)NCBIMGSCv36mm8
Celera597,879,678 - 97,898,791 (-)NCBICelera
Cytogenetic Map5E4NCBI
cM Map548.49NCBI
Plac8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,356,950 - 9,378,586 (+)NCBIGRCr8
mRatBN7.2149,052,601 - 9,074,264 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl149,063,048 - 9,074,264 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx149,024,175 - 9,045,882 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01410,324,037 - 10,345,742 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0149,020,655 - 9,042,362 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01410,692,799 - 10,714,556 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1410,692,764 - 10,714,524 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01410,640,286 - 10,661,811 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41410,302,667 - 10,325,559 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11410,273,445 - 10,325,545 (+)NCBI
Celera149,161,291 - 9,183,206 (+)NCBICelera
Cytogenetic Map14p22NCBI
Plac8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554746,522,204 - 6,534,312 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554746,518,459 - 6,533,251 (+)NCBIChiLan1.0ChiLan1.0
PLAC8B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1327,004,147 - 7,049,877 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl327,007,753 - 7,029,140 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3234,835,491 - 34,881,280 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0327,025,506 - 7,071,390 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl327,029,110 - 7,050,585 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1327,096,360 - 7,142,074 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0326,964,929 - 7,010,717 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03232,951,037 - 32,996,662 (+)NCBIUU_Cfam_GSD_1.0
Plac8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052855,323,061 - 5,341,351 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367381,484,859 - 1,503,302 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367381,484,905 - 1,503,181 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLAC8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.18135,250,761 - 135,279,091 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28144,545,594 - 144,573,932 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLAC8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1731,471,166 - 31,496,053 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl731,470,774 - 31,489,432 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603710,049,527 - 10,074,422 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plac8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624900133,889 - 158,050 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624900134,075 - 157,982 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000044867   ⟹   ENSPPAP00000022061
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl446,943,940 - 46,964,131 (+)Ensembl
RefSeq Acc Id: XM_003832248   ⟹   XP_003832296
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2346,957,286 - 46,982,509 (+)NCBI
NHGRI_mPanPan1447,146,634 - 47,171,812 (+)NCBI
Mhudiblu_PPA_v0441,089,847 - 41,115,061 (+)NCBI
PanPan1.1446,939,019 - 46,964,131 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055111327   ⟹   XP_054967302
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2346,963,659 - 46,982,509 (+)NCBI
NHGRI_mPanPan1447,152,997 - 47,171,812 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003832296 (Get FASTA)   NCBI Sequence Viewer  
  XP_054967302 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000022061.1
RefSeq Acc Id: XP_003832296   ⟸   XM_003832248
- UniProtKB: A0A2R9B1N9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000022061   ⟸   ENSPPAT00000044867
RefSeq Acc Id: XP_054967302   ⟸   XM_055111327
- UniProtKB: A0A2R9B1N9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034235 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044867.1 UniProtKB/TrEMBL
InterPro PLAC_motif_containing UniProtKB/TrEMBL
KEGG Report pps:100968592 UniProtKB/TrEMBL
NCBI Gene PLAC8 ENTREZGENE
PANTHER PTHR15907 UniProtKB/TrEMBL
Pfam PLAC8 UniProtKB/TrEMBL
UniProt A0A2R9B1N9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-26 PLAC8  placenta associated 8    placenta specific 8  Symbol and/or name change 5135510 APPROVED