NTPCR (nucleoside-triphosphatase, cancer-related) - Rat Genome Database

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Gene: NTPCR (nucleoside-triphosphatase, cancer-related) Pan paniscus
Analyze
Symbol: NTPCR
Name: nucleoside-triphosphatase, cancer-related
RGD ID: 12005294
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ribonucleoside triphosphate phosphatase activity (inferred); PARTICIPATES IN thiamine metabolic pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cancer-related nucleoside-triphosphatase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2116,228,786 - 16,256,987 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1116,435,012 - 16,463,205 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01208,488,080 - 208,521,291 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11213,514,986 - 213,543,680 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1213,514,986 - 213,543,680 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
NTPCR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2116,228,786 - 16,256,987 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1116,435,012 - 16,463,205 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01208,488,080 - 208,521,291 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11213,514,986 - 213,543,680 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1213,514,986 - 213,543,680 (+)Ensemblpanpan1.1panPan2
NTPCR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381232,950,611 - 232,983,882 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1232,950,605 - 232,983,882 (+)EnsemblGRCh38hg38GRCh38
GRCh371233,086,357 - 233,119,628 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361231,152,993 - 231,180,842 (+)NCBINCBI36Build 36hg18NCBI36
Celera1206,356,751 - 206,384,600 (+)NCBICelera
Cytogenetic Map1q42.2NCBI
HuRef1203,576,326 - 203,604,129 (+)NCBIHuRef
CHM1_11234,359,916 - 234,387,769 (+)NCBICHM1_1
T2T-CHM13v2.01232,336,950 - 232,370,221 (+)NCBIT2T-CHM13v2.0
Ntpcr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398126,456,724 - 126,474,974 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8126,456,702 - 126,474,974 (+)EnsemblGRCm39 Ensembl
GRCm388125,729,975 - 125,748,235 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8125,729,963 - 125,748,235 (+)EnsemblGRCm38mm10GRCm38
MGSCv378128,258,103 - 128,272,135 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368128,620,319 - 128,634,300 (+)NCBIMGSCv36mm8
Celera8130,047,167 - 130,061,146 (+)NCBICelera
Cytogenetic Map8E2NCBI
cM Map873.65NCBI
Ntpcr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81970,598,816 - 70,612,580 (+)NCBIGRCr8
mRatBN7.21953,701,496 - 53,715,260 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1953,695,976 - 53,715,202 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1960,492,517 - 60,506,338 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01961,350,872 - 61,364,561 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01963,426,814 - 63,440,504 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01958,565,576 - 58,579,276 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1958,565,576 - 58,579,265 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01969,262,818 - 69,276,518 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41955,939,045 - 55,952,745 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11955,935,403 - 55,957,241 (+)NCBI
Celera1953,062,575 - 53,076,275 (+)NCBICelera
Cytogenetic Map19q12NCBI
Ntpcr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554926,253,087 - 6,279,016 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554926,253,087 - 6,279,016 (-)NCBIChiLan1.0ChiLan1.0
NTPCR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.146,704,571 - 6,733,820 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha46,693,240 - 6,722,006 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.046,726,875 - 6,755,692 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl46,725,334 - 6,756,323 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.146,736,907 - 6,765,707 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.046,857,165 - 6,885,962 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.047,081,335 - 7,110,107 (-)NCBIUU_Cfam_GSD_1.0
Ntpcr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934442,392,764 - 42,407,048 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648418,557,958 - 18,571,254 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648418,557,999 - 18,571,236 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTPCR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1457,802,565 - 57,833,151 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11457,802,564 - 57,833,155 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NTPCR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12570,162,533 - 70,190,936 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2570,162,571 - 70,190,517 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605572,116,323 - 72,149,590 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ntpcr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477517,006,662 - 17,033,740 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477516,996,658 - 17,033,745 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000037154   ⟹   ENSPPAP00000014468
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1213,514,986 - 213,543,680 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000037158   ⟹   ENSPPAP00000014472
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1213,515,166 - 213,541,438 (+)Ensembl
RefSeq Acc Id: XM_003824483   ⟹   XP_003824531
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2116,228,786 - 16,256,987 (-)NCBI
NHGRI_mPanPan1116,435,012 - 16,463,205 (-)NCBI
Mhudiblu_PPA_v01208,488,088 - 208,521,232 (+)NCBI
PanPan1.11213,514,986 - 213,543,680 (+)NCBI
Sequence:
RefSeq Acc Id: XM_057300139   ⟹   XP_057156122
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2116,228,786 - 16,256,976 (-)NCBI
NHGRI_mPanPan1116,435,012 - 16,463,201 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003824531 (Get FASTA)   NCBI Sequence Viewer  
  XP_057156122 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000014468.1
  ENSPPAP00000014472.1
RefSeq Acc Id: XP_003824531   ⟸   XM_003824483
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSPPAP00000014472   ⟸   ENSPPAT00000037158
Ensembl Acc Id: ENSPPAP00000014468   ⟸   ENSPPAT00000037154
RefSeq Acc Id: XP_057156122   ⟸   XM_057300139
- Peptide Label: isoform X2
Protein Domains
AAA+ ATPase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030395 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000037154.1 UniProtKB/TrEMBL
  ENSPPAT00000037158.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  Nuc-triphosphatase_THEP1 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report pps:100970719 UniProtKB/TrEMBL
NCBI Gene NTPCR ENTREZGENE
PANTHER CANCER-RELATED NUCLEOSIDE-TRIPHOSPHATASE UniProtKB/TrEMBL
  PTHR43146 UniProtKB/TrEMBL
Pfam NTPase_1 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9AG00_PANPA UniProtKB/TrEMBL
  A0A2R9AGN7_PANPA UniProtKB/TrEMBL