NPTX1 (neuronal pentraxin 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: NPTX1 (neuronal pentraxin 1) Pan paniscus
Analyze
Symbol: NPTX1
Name: neuronal pentraxin 1
RGD ID: 12001444
Description: INVOLVED IN axonogenesis involved in innervation (ortholog); cellular response to glucose stimulus (ortholog); cellular response to potassium ion (ortholog); ASSOCIATED WITH genetic disease (ortholog); Spinocerebellar Ataxia 50 (ortholog); FOUND IN glutamatergic synapse (ortholog); synaptic cleft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuronal pentraxin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21997,048,221 - 97,057,994 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117101,948,062 - 101,957,835 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01774,896,150 - 74,905,917 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11780,629,443 - 80,638,376 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NPTX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21997,048,221 - 97,057,994 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117101,948,062 - 101,957,835 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01774,896,150 - 74,905,917 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11780,629,443 - 80,638,376 (-)NCBIpanpan1.1PanPan1.1panPan2
NPTX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381780,466,834 - 80,476,607 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1780,466,834 - 80,477,843 (-)EnsemblGRCh38hg38GRCh38
GRCh371778,440,634 - 78,450,407 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361776,055,228 - 76,064,999 (-)NCBINCBI36Build 36hg18NCBI36
Build 341776,055,227 - 76,064,999NCBI
Celera1775,069,005 - 75,078,529 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1773,878,650 - 73,888,424 (-)NCBIHuRef
CHM1_11778,526,902 - 78,536,673 (-)NCBICHM1_1
T2T-CHM13v2.01781,368,723 - 81,378,497 (-)NCBIT2T-CHM13v2.0
Nptx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,429,545 - 119,438,646 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11119,429,545 - 119,438,579 (-)EnsemblGRCm39 Ensembl
GRCm3811119,538,719 - 119,547,820 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11119,538,719 - 119,547,753 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711119,400,033 - 119,409,134 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611119,355,462 - 119,363,915 (-)NCBIMGSCv36mm8
Celera11131,286,494 - 131,295,595 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.95NCBI
Nptx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810105,309,578 - 105,318,829 (-)NCBIGRCr8
mRatBN7.210104,811,107 - 104,820,358 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10104,811,403 - 104,820,367 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10109,914,282 - 109,923,567 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010109,377,316 - 109,386,601 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010104,731,702 - 104,740,953 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010108,682,637 - 108,691,592 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10108,682,638 - 108,691,367 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010108,286,989 - 108,295,944 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410108,918,661 - 108,927,616 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10103,356,568 - 103,365,489 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Nptx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555062,447,109 - 2,456,965 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555062,447,429 - 2,456,612 (+)NCBIChiLan1.0ChiLan1.0
NPTX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.191,388,728 - 1,398,115 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl91,388,407 - 1,399,390 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha92,006,248 - 2,015,635 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.091,998,099 - 2,007,496 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,998,127 - 2,007,488 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.192,021,740 - 2,031,119 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.092,147,267 - 2,156,623 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.092,228,148 - 2,237,541 (+)NCBIUU_Cfam_GSD_1.0
Nptx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056022,027,566 - 2,038,459 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365944,373,473 - 4,384,461 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365944,373,500 - 4,384,394 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPTX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl122,036,810 - 2,046,193 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1122,036,727 - 2,046,202 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,938,606 - 1,948,101 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NPTX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11672,438,728 - 72,449,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1672,439,482 - 72,449,139 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607743,751,846 - 43,761,582 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nptx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248019,628,882 - 9,637,859 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248019,628,878 - 9,637,869 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034943068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_034943068   ⟹   XP_034798959
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21997,048,221 - 97,057,994 (-)NCBI
NHGRI_mPanPan117101,948,062 - 101,957,835 (-)NCBI
Mhudiblu_PPA_v01774,896,150 - 74,905,917 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034798959 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_034798959   ⟸   XM_034943068


Additional Information

Database Acc Id Source(s)
NCBI Gene NPTX1 ENTREZGENE