TENM2 (teneurin transmembrane protein 2) - Rat Genome Database

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Gene: TENM2 (teneurin transmembrane protein 2) Pan paniscus
Analyze
Symbol: TENM2
Name: teneurin transmembrane protein 2
RGD ID: 11988500
Description: ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (inferred); neuron development (inferred); retrograde trans-synaptic signaling by trans-synaptic protein complex (inferred); ASSOCIATED WITH esophageal atresia (ortholog); substance-related disorder (ortholog); FOUND IN cell-cell junction (ortholog); dendritic spine (ortholog); extrinsic component of postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC117980488; odz, odd Oz/ten-m homolog 2; ODZ2; teneurin-2; uncharacterized LOC117980488
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24160,186,848 - 163,424,969 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15158,326,399 - 161,564,515 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05162,346,710 - 163,627,371 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15169,420,475 - 170,392,593 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5169,420,480 - 170,392,581 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TENM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24160,186,848 - 163,424,969 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15158,326,399 - 161,564,515 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05162,346,710 - 163,627,371 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15169,420,475 - 170,392,593 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5169,420,480 - 170,392,581 (+)Ensemblpanpan1.1panPan2
TENM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385166,979,029 - 168,264,157 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5166,979,029 - 168,264,157 (+)EnsemblGRCh38hg38GRCh38
GRCh375166,406,034 - 167,691,162 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365167,114,519 - 167,623,740 (+)NCBINCBI36Build 36hg18NCBI36
Build 345167,477,951 - 167,623,739NCBI
Celera5162,750,499 - 163,726,534 (+)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5161,812,425 - 162,791,103 (+)NCBIHuRef
CHM1_15166,144,311 - 167,124,193 (+)NCBICHM1_1
T2T-CHM13v2.05167,513,669 - 168,798,988 (+)NCBIT2T-CHM13v2.0
Tenm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,897,483 - 37,881,486 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,897,483 - 37,126,791 (-)EnsemblGRCm39 Ensembl
GRCm381136,006,656 - 37,237,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1136,006,656 - 37,235,964 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,820,171 - 36,757,745 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,851,071 - 36,787,666 (-)NCBIMGSCv36mm8
Celera1140,009,205 - 40,811,666 (-)NCBICelera
Cytogenetic Map11A4- A5NCBI
cM Map1121.96NCBI
Tenm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81020,984,710 - 22,121,001 (-)NCBIGRCr8
mRatBN7.21020,480,662 - 21,706,415 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1020,481,854 - 21,705,597 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1025,229,591 - 26,365,979 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01024,718,139 - 25,854,542 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01020,205,571 - 21,341,852 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01020,846,091 - 21,791,771 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1020,844,899 - 21,265,026 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01020,716,458 - 21,659,087 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41020,939,207 - 21,888,443 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11020,940,255 - 22,096,609 (-)NCBI
Celera1020,101,901 - 21,233,134 (-)NCBICelera
Cytogenetic Map10q12NCBI
Tenm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540820,437,067 - 21,338,897 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540820,150,223 - 21,340,276 (+)NCBIChiLan1.0ChiLan1.0
TENM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1443,450,278 - 44,962,993 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl443,451,059 - 44,377,371 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha443,408,748 - 44,060,223 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0443,873,657 - 44,519,117 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl443,874,738 - 44,793,811 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1443,643,674 - 44,287,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0443,838,128 - 44,482,532 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0444,344,597 - 44,989,412 (-)NCBIUU_Cfam_GSD_1.0
Tenm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721397,485,971 - 98,368,217 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366221,102,963 - 1,983,751 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366221,101,587 - 1,983,816 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1655,625,320 - 56,620,257 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11655,624,273 - 59,084,150 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21660,189,355 - 61,223,392 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TENM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12369,206,076 - 70,487,159 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660348,199,738 - 9,519,849 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tenm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473321,732,787 - 22,627,526 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473321,732,997 - 22,921,889 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008963292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008963293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055112852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055112853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000048236   ⟹   ENSPPAP00000025409
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5169,420,480 - 170,391,465 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000048242   ⟹   ENSPPAP00000025414
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5170,004,022 - 170,391,465 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000048245   ⟹   ENSPPAP00000025418
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5170,005,976 - 170,392,581 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000048248   ⟹   ENSPPAP00000025421
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5170,079,311 - 170,391,465 (+)Ensembl
RefSeq Acc Id: XM_008963293   ⟹   XP_008961541
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24162,735,742 - 163,424,969 (+)NCBI
NHGRI_mPanPan15160,875,267 - 161,564,515 (+)NCBI
Mhudiblu_PPA_v05162,939,922 - 163,627,186 (+)NCBI
PanPan1.15169,707,278 - 170,392,593 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034961302   ⟹   XP_034817193
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24162,144,626 - 163,424,969 (+)NCBI
NHGRI_mPanPan15160,284,170 - 161,564,515 (+)NCBI
Mhudiblu_PPA_v05162,346,710 - 163,626,024 (+)NCBI
RefSeq Acc Id: XM_034961315   ⟹   XP_034817206
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24162,735,737 - 163,424,969 (+)NCBI
NHGRI_mPanPan15160,875,266 - 161,564,515 (+)NCBI
Mhudiblu_PPA_v05162,939,921 - 163,627,186 (+)NCBI
RefSeq Acc Id: XM_055112852   ⟹   XP_054968827
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24160,186,848 - 163,424,969 (+)NCBI
NHGRI_mPanPan15158,326,399 - 161,564,515 (+)NCBI
RefSeq Acc Id: XM_055112853   ⟹   XP_054968828
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24163,285,740 - 163,424,969 (+)NCBI
NHGRI_mPanPan15161,425,278 - 161,564,515 (+)NCBI
RefSeq Acc Id: XM_057302375   ⟹   XP_057158358
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24162,735,741 - 163,424,969 (+)NCBI
NHGRI_mPanPan15160,875,267 - 161,564,515 (+)NCBI
RefSeq Acc Id: XM_057302376   ⟹   XP_057158359
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24162,735,743 - 163,424,969 (+)NCBI
NHGRI_mPanPan15160,875,267 - 161,564,515 (+)NCBI
RefSeq Acc Id: XM_063604288   ⟹   XP_063460358
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24160,186,848 - 163,424,969 (+)NCBI
RefSeq Acc Id: XM_063604289   ⟹   XP_063460359
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24160,186,848 - 163,424,969 (+)NCBI
RefSeq Acc Id: XM_063604290   ⟹   XP_063460360
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24160,186,848 - 163,424,969 (+)NCBI
RefSeq Acc Id: XM_063604291   ⟹   XP_063460361
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24160,186,848 - 163,424,969 (+)NCBI
RefSeq Acc Id: XM_063604292   ⟹   XP_063460362
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24163,095,005 - 163,424,969 (+)NCBI
RefSeq Acc Id: XP_008961541   ⟸   XM_008963293
- Peptide Label: isoform X5
- UniProtKB: A0A2R9B752 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034817193   ⟸   XM_034961302
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BEF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034817206   ⟸   XM_034961315
- Peptide Label: isoform X8
- UniProtKB: A0A2R9B8K7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000025409   ⟸   ENSPPAT00000048236
Ensembl Acc Id: ENSPPAP00000025414   ⟸   ENSPPAT00000048242
Ensembl Acc Id: ENSPPAP00000025421   ⟸   ENSPPAT00000048248
Ensembl Acc Id: ENSPPAP00000025418   ⟸   ENSPPAT00000048245
RefSeq Acc Id: XP_054968827   ⟸   XM_055112852
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BEF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054968828   ⟸   XM_055112853
- Peptide Label: isoform X10
- UniProtKB: A0A2R9B8K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057158358   ⟸   XM_057302375
- Peptide Label: isoform X6
- UniProtKB: A0A2R9B752 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057158359   ⟸   XM_057302376
- Peptide Label: isoform X7
- UniProtKB: A0A2R9B752 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063460358   ⟸   XM_063604288
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BEF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063460360   ⟸   XM_063604290
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BEF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063460361   ⟸   XM_063604291
- Peptide Label: isoform X4
- UniProtKB: A0A2R9BEF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063460359   ⟸   XM_063604289
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BEF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063460362   ⟸   XM_063604292
- Peptide Label: isoform X9
- UniProtKB: A0A2R9B752 (UniProtKB/TrEMBL)
Protein Domains
EGF-like   Teneurin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035829 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048236.1 UniProtKB/TrEMBL
  ENSPPAT00000048242.1 UniProtKB/TrEMBL
  ENSPPAT00000048245.1 UniProtKB/TrEMBL
  ENSPPAT00000048248.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  RHS repeat-associated core UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  CarboxyPept-like_regulatory UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF_extracell UniProtKB/TrEMBL
  IPR006530 UniProtKB/TrEMBL
  Quino_amine_DH_bsu UniProtKB/TrEMBL
  Rhs_assc_core UniProtKB/TrEMBL
  Ten_N UniProtKB/TrEMBL
  Teneurin_domain UniProtKB/TrEMBL
  Tox-GHH_dom UniProtKB/TrEMBL
KEGG Report pps:100969475 UniProtKB/TrEMBL
NCBI Gene TENM2 ENTREZGENE
PANTHER PTHR11219:SF8 UniProtKB/TrEMBL
  TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE UniProtKB/TrEMBL
Pfam EGF_2 UniProtKB/TrEMBL
  Ten_N UniProtKB/TrEMBL
  Tox-GHH UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  TENEURIN_N UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP NHL repeat UniProtKB/TrEMBL
  SSF49464 UniProtKB/TrEMBL
  SSF50969 UniProtKB/TrEMBL
UniProt A0A2R9B752 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B8K7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BEF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BEG4_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-20 TENM2  teneurin transmembrane protein 2  LOC117980488  uncharacterized LOC117980488  Data merged from RGD:32731197 737654 PROVISIONAL