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Gene: CIMIP4 (ciliary microtubule inner protein 4) Pan paniscus

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Symbol:

CIMIP4

Name:

ciliary microtubule inner protein 4

RGD ID:

11960345

Description:

ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); autosomal recessive chronic granulomatous disease 3 (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); FOUND IN sperm flagellum (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

testis expressed 33; testis-expressed protein 33; TEX33

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	46,845,074 - 46,864,787 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	49,536,521 - 49,553,369 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	17,905,387 - 17,922,201 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	35,740,255 - 35,758,056 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	35,740,255 - 35,758,056 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenylosuccinase lyase deficiency (ISO)

autosomal recessive chronic granulomatous disease 3 (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

myoclonic dystonia 26 (ISO)

neurodegeneration with brain iron accumulation 2A (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

sperm flagellum (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

CIMIP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	46,845,074 - 46,864,787 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	49,536,521 - 49,553,369 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	17,905,387 - 17,922,201 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	35,740,255 - 35,758,056 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	35,740,255 - 35,758,056 (-)	Ensembl	panpan1.1		panPan2

CIMIP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	36,991,125 - 37,007,851 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	36,991,120 - 37,007,851 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	37,387,166 - 37,403,892 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	35,717,117 - 35,733,785 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	21,188,499 - 21,205,213 (-)	NCBI		Celera
Cytogenetic Map	22	q12.3	NCBI
HuRef	22	20,352,225 - 20,369,005 (-)	NCBI		HuRef
CHM1_1	22	37,346,670 - 37,363,356 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	37,450,704 - 37,467,442 (-)	NCBI		T2T-CHM13v2.0

Cimip4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	78,262,600 - 78,280,112 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	78,262,600 - 78,280,112 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	78,378,400 - 78,395,912 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	78,378,400 - 78,395,912 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	78,208,830 - 78,226,342 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	78,205,655 - 78,223,157 (-)	NCBI		MGSCv36	mm8
Celera	15	79,841,109 - 79,858,612 (-)	NCBI		Celera
Cytogenetic Map	15	E1	NCBI
cM Map	15	37.45	NCBI

Cimip4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	111,808,669 - 111,825,522 (-)	NCBI		GRCr8
mRatBN7.2	7	109,928,165 - 109,944,994 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	109,928,173 - 109,947,072 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	111,677,816 - 111,694,547 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	113,901,349 - 113,918,080 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	113,869,965 - 113,886,792 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	119,598,061 - 119,613,175 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	119,588,352 - 119,603,850 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	7	106,266,605 - 106,282,947 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Cimip4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	23,508,325 - 23,525,720 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	23,508,531 - 23,525,964 (-)	NCBI	ChiLan1.0	ChiLan1.0

CIMIP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	27,495,451 - 27,510,203 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	27,494,157 - 27,510,199 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	27,444,054 - 27,464,694 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	28,281,562 - 28,302,285 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	28,281,567 - 28,303,956 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	28,003,123 - 28,023,733 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	28,311,699 - 28,332,334 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	28,489,679 - 28,510,930 (+)	NCBI		UU_Cfam_GSD_1.0

Cimip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	10,884,063 - 10,893,924 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936492	3,887,052 - 3,904,337 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CIMIP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	10,764,497 - 10,776,172 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	10,768,056 - 10,776,274 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	8,363,878 - 8,375,594 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CIMIP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	19,693,013 - 19,714,116 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	19,693,067 - 19,705,317 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	106,149,322 - 106,169,643 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cimip4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	10,777,119 - 10,799,420 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	10,774,915 - 10,797,904 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003821541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034948937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055105734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055105735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000038498 ⟹ ENSPPAP00000015806

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	22	35,740,255 - 35,758,056 (-)	Ensembl

RefSeq Acc Id:

XM_003821541 ⟹ XP_003821589

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	46,845,075 - 46,864,784 (-)	NCBI
NHGRI_mPanPan1	22	49,536,522 - 49,553,366 (-)	NCBI
Mhudiblu_PPA_v0	22	17,905,387 - 17,922,201 (-)	NCBI
PanPan1.1	22	35,740,255 - 35,758,056 (-)	NCBI

Sequence:

show sequence

TCCCAGCAACCATCCATTGGTCTTCACCAGTAGTTCTGCAGCGGGGATCTGCACTTCTGGGCTT
CAGCACACATCAGTGTGGTTCACGTGTTTCCTGCTGTTATGAAAGAGATTGGAGAGGACTAAGC
TTGGAATTGCCTGTCCCACAGCAAGAGGCTATGGAGCTGGGCCACGGAGCAGGTACAACCACTT
TGACCAGGGCCCATCTGAATGACAAGGAGGGCCAACAGGACTTGGACCCCTGGAAAGCGGCCTA
CAGTTCCTTGGACACCTCCAAGTTCAAGAACCAGGGTCTGTCATCCCCACAGCCCCTGCCCCTG
GGAGCCAGCGCTCAAGGCAGCTCCCTAGGGCAGTGCCACTTGAAGGAGATTCCCCCTCCACCCC
CGACTGCTGCCAGCAGGGATTCTCTGGGCATGGACCCACAGTCCAGGTCCCTGAAGAATGGGGG
CTCTCGATCCTCCTCGAGAGAGAACAGGGCCACCTCGGGAGAGGGGGTTCAGCCATGCCAGGGG
ACGGATGACGGTCCCAGCTTGGGGGCTCAGGACCAGAGGAGCACGCCCACGAACCAGAAGGGCA
GCATCATTCCTAACAACATTCGCCACAAGTTTGGGAGCAATGTGGTGGACCAGCTGGTCTCCGA
GGAGCAGGCTCAAAAGGCTATTGATGAAGTCTTCGAGGGCCAGAAAAGGGCAAGCTCATGGCCC
AGCAGGACCCAGAATCCTGTGGAAATCTCCTCCGTCTTCTCAGACTACTATGACCTCGGCTACA
ACATGCGGTCAAACTTGTTTCGAGGGGCTGCTGAGGAGACAAAGAGCCTCATGAAGGCTTCCTA
CACACCAGAGGTCATTGAGAAATCAGTGAGGGACTTAGAACACTGGCATGGCAGGAAGACGGAT
GATCTGGGACGGTGGCACCAGAAAAACGCTATGAACCTGAACTTGCAGAAAGCACTGGAAGAGA
AATATGGAGAAAACAGCAAATCCAAGAGCTCAAAGTACTAGATTTGACACAGTAGAGGTGTCTT
CTACTCAAATAAAGTGCTAACAATAAGGAAAGGCTCA

hide sequence

RefSeq Acc Id:

XM_034948937 ⟹ XP_034804828

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	46,845,099 - 46,861,919 (-)	NCBI
NHGRI_mPanPan1	22	49,536,546 - 49,550,501 (-)	NCBI
Mhudiblu_PPA_v0	22	17,905,397 - 17,919,140 (-)	NCBI

RefSeq Acc Id:

XM_055105734 ⟹ XP_054961709

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	46,845,074 - 46,864,787 (-)	NCBI
NHGRI_mPanPan1	22	49,536,521 - 49,553,369 (-)	NCBI

RefSeq Acc Id:

XM_055105735 ⟹ XP_054961710

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	46,845,099 - 46,864,726 (-)	NCBI
NHGRI_mPanPan1	22	49,536,546 - 49,553,308 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003821589	(Get FASTA)	NCBI Sequence Viewer
	XP_034804828	(Get FASTA)	NCBI Sequence Viewer
	XP_054961709	(Get FASTA)	NCBI Sequence Viewer
	XP_054961710	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000015806.1

RefSeq Acc Id:	XP_003821589 ⟸ XM_003821541
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9AER6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELGHGAGTTTLTRAHLNDKEGQQDLDPWKAAYSSLDTSKFKNQGLSSPQPLPLGASAQGSSLG QCHLKEIPPPPPTAASRDSLGMDPQSRSLKNGGSRSSSRENRATSGEGVQPCQGTDDGPSLGAQ DQRSTPTNQKGSIIPNNIRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASSWPSRTQNPVEIS SVFSDYYDLGYNMRSNLFRGAAEETKSLMKASYTPEVIEKSVRDLEHWHGRKTDDLGRWHQKNA MNLNLQKALEEKYGENSKSKSSKY hide sequence

RefSeq Acc Id:	XP_034804828 ⟸ XM_034948937
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AER6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000015806 ⟸ ENSPPAT00000038498

RefSeq Acc Id:	XP_054961709 ⟸ XM_055105734
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AER6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054961710 ⟸ XM_055105735
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AER6 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000031026	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000038498.1	UniProtKB/TrEMBL
InterPro	TEX33	UniProtKB/TrEMBL
KEGG Report	pps:100989376	UniProtKB/TrEMBL
NCBI Gene	TEX33	ENTREZGENE
PANTHER	PTHR31702	UniProtKB/TrEMBL
	TESTIS-EXPRESSED PROTEIN 33	UniProtKB/TrEMBL
Pfam	TEX33	UniProtKB/TrEMBL
UniProt	A0A2R9AER6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-02	CIMIP4	ciliary microtubule inner protein 4	TEX33	testis expressed 33	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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