CIMIP4 (ciliary microtubule inner protein 4) - Rat Genome Database

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Gene: CIMIP4 (ciliary microtubule inner protein 4) Chlorocebus sabaeus
Analyze
Symbol: CIMIP4
Name: ciliary microtubule inner protein 4
RGD ID: 18638814
Description: ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); autosomal recessive chronic granulomatous disease 3 (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); FOUND IN sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: testis expressed 33; testis-expressed protein 33; testis-expressed sequence 33 protein; TEX33
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,693,013 - 19,714,116 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,693,067 - 19,705,317 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,149,322 - 106,169,643 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CIMIP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,693,013 - 19,714,116 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,693,067 - 19,705,317 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,149,322 - 106,169,643 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CIMIP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,991,125 - 37,007,851 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,991,120 - 37,007,851 (-)EnsemblGRCh38hg38GRCh38
GRCh372237,387,166 - 37,403,892 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,717,117 - 35,733,785 (-)NCBINCBI36Build 36hg18NCBI36
Celera2221,188,499 - 21,205,213 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,352,225 - 20,369,005 (-)NCBIHuRef
CHM1_12237,346,670 - 37,363,356 (-)NCBICHM1_1
T2T-CHM13v2.02237,450,704 - 37,467,442 (-)NCBIT2T-CHM13v2.0
Cimip4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,262,600 - 78,280,112 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,262,600 - 78,280,112 (-)EnsemblGRCm39 Ensembl
GRCm381578,378,400 - 78,395,912 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,378,400 - 78,395,912 (-)EnsemblGRCm38mm10GRCm38
MGSCv371578,208,830 - 78,226,342 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,205,655 - 78,223,157 (-)NCBIMGSCv36mm8
Celera1579,841,109 - 79,858,612 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.45NCBI
Cimip4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,808,669 - 111,825,522 (-)NCBIGRCr8
mRatBN7.27109,928,165 - 109,944,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,928,173 - 109,947,072 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,677,816 - 111,694,547 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,901,349 - 113,918,080 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,869,965 - 113,886,792 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,598,061 - 119,613,175 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07119,588,352 - 119,603,850 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera7106,266,605 - 106,282,947 (-)NCBICelera
Cytogenetic Map7q34NCBI
Cimip4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,508,325 - 23,525,720 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,508,531 - 23,525,964 (-)NCBIChiLan1.0ChiLan1.0
CIMIP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,845,074 - 46,864,787 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,536,521 - 49,553,369 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,905,387 - 17,922,201 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,740,255 - 35,758,056 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,740,255 - 35,758,056 (-)Ensemblpanpan1.1panPan2
CIMIP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,495,451 - 27,510,203 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,494,157 - 27,510,199 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,444,054 - 27,464,694 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,281,562 - 28,302,285 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,281,567 - 28,303,956 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,003,123 - 28,023,733 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,311,699 - 28,332,334 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,489,679 - 28,510,930 (+)NCBIUU_Cfam_GSD_1.0
Cimip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,884,063 - 10,893,924 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364923,887,052 - 3,904,337 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIMIP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,764,497 - 10,776,172 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,768,056 - 10,776,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,363,878 - 8,375,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cimip4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,777,119 - 10,799,420 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475210,774,915 - 10,797,904 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 14 1
Below cutoff 6 3 20

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000005676   ⟹   ENSCSAP00000003893
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1919,693,067 - 19,705,317 (-)Ensembl
RefSeq Acc Id: XM_038007498   ⟹   XP_037863426
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045106,149,322 - 106,169,643 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037863426 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003893.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000003893   ⟸   ENSCSAT00000005676
RefSeq Acc Id: XP_037863426   ⟸   XM_038007498


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007629 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005676.1 UniProtKB/TrEMBL
InterPro TEX33 UniProtKB/TrEMBL
NCBI Gene TEX33 ENTREZGENE
PANTHER PTHR31702 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 33 UniProtKB/TrEMBL
Pfam TEX33 UniProtKB/TrEMBL
UniProt A0A0D9R5K4_CHLSB UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-02 CIMIP4  ciliary microtubule inner protein 4  TEX33  testis expressed 33  Symbol and/or name change 5135510 APPROVED