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Gene: FAM133B (family with sequence similarity 133 member B) Pan paniscus

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Symbol:

FAM133B

Name:

family with sequence similarity 133 member B

RGD ID:

11931322

Description:

ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	110,446,977 - 110,476,694 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	158,711,686 - 158,741,352 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	84,559,264 - 84,589,085 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	98,154,953 - 98,184,213 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	98,156,201 - 98,184,114 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
FAM133B	Bonobo	pleomorphic xanthoastrocytoma		ISO	FAM133B (Homo sapiens)	8554872	ClinVar Annotator: match by term: Pleomorphic xanthoastrocytoma	ClinVar	PMID:28299358

FAM133B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	110,446,977 - 110,476,694 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	158,711,686 - 158,741,352 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	84,559,264 - 84,589,085 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	98,154,953 - 98,184,213 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	98,156,201 - 98,184,114 (-)	Ensembl	panpan1.1		panPan2

FAM133B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	92,560,758 - 92,590,390 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	92,560,758 - 92,590,393 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	92,190,072 - 92,219,704 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	92,028,008 - 92,057,642 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	86,894,604 - 86,924,236 (-)	NCBI		Celera
Cytogenetic Map	7	q21.2	NCBI
HuRef	7	86,799,447 - 86,829,074 (-)	NCBI		HuRef
CHM1_1	7	92,120,110 - 92,149,746 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	93,802,706 - 93,832,343 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	91,519,294 - 91,548,926 (-)	NCBI

Fam133b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	3,593,833 - 3,620,548 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	3,593,833 - 3,620,238 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	3,543,833 - 3,570,548 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	3,543,833 - 3,570,238 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	3,543,833 - 3,570,548 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	3,549,850 - 3,575,817 (+)	NCBI		MGSCv36	mm8
Celera	5	3,479,777 - 3,506,492 (+)	NCBI		Celera
Cytogenetic Map	5	A1	NCBI
cM Map	5	2.22	NCBI

Fam133b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	31,544,458 - 31,571,056 (-)	NCBI		GRCr8
mRatBN7.2	4	30,589,646 - 30,616,291 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	30,589,635 - 30,616,040 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	35,562,476 - 35,588,799 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	31,488,560 - 31,514,883 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	29,884,597 - 29,910,919 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	27,728,883 - 27,755,182 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	27,730,051 - 27,755,103 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	27,632,125 - 27,658,802 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	27,305,922 - 27,332,221 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	27,332,822 - 27,349,419 (-)	NCBI
Celera	4	26,014,093 - 26,040,392 (-)	NCBI		Celera
Cytogenetic Map	4	q13	NCBI

Fam133b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	9,484,972 - 9,502,485 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955432	9,484,967 - 9,502,484 (-)	NCBI	ChiLan1.0	ChiLan1.0

FAM133B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	18,145,882 - 18,168,367 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	30,781,898 - 30,783,509 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1 Ensembl	14	18,147,576 - 18,168,274 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	17,706,754 - 17,729,075 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	17,952,687 - 17,975,186 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	17,952,700 - 17,975,143 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	18,113,143 - 18,135,428 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	17,825,217 - 17,847,483 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	18,099,459 - 18,121,970 (-)	NCBI		UU_Cfam_GSD_1.0

Fam133b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	31,533,094 - 31,556,759 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936803	1,243,268 - 1,265,292 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936803	1,243,180 - 1,266,500 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM133B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	72,472,338 - 72,503,756 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	72,470,990 - 72,503,822 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	79,200,174 - 79,232,806 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM133B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	56,420,342 - 56,449,685 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666042	47,830,947 - 47,860,341 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam133b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624809	597,656 - 640,691 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624809	597,535 - 643,122 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_003809733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034964449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034964450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034964451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055114710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000053083 ⟹ ENSPPAP00000030224

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	98,156,201 - 98,184,114 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000053089 ⟹ ENSPPAP00000030230

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	98,171,712 - 98,177,897 (-)	Ensembl

RefSeq Acc Id:

XM_003809733 ⟹ XP_003809781

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	110,446,977 - 110,476,689 (-)	NCBI
NHGRI_mPanPan1	7	158,711,686 - 158,741,348 (-)	NCBI
Mhudiblu_PPA_v0	7	84,559,264 - 84,589,080 (-)	NCBI
PanPan1.1	7	98,154,953 - 98,184,213 (-)	NCBI

Sequence:

show sequence

GGAGTGGGGAGGCGGCAAGAGGACCTGCGGCAGGCCCTCTTCGGCAGTCTCTCCGGCCCGGTTTCCCTCGGCGTGCTACTGTGCGCTCGATCCAGCACCATGGGGAAGCGGGACAATCGGGTGGCCTA
TATGAACCCAATAGCAATGGCGAGATCAAGGGGTCCAATCCAGTCTTCAGGGCCAACAATACAGGATTATCTGAATCGACCAAGGCCTACCTGGGAAGAAGTAAAAGAGCAACTAGAAAAGAAAAAGA
AAGGCTCCAAGGCTTTGGCTGAATTTGAAGAAAAAATGAATGAGAACTGGAAGAAAGAACTGGAAAAACACAGGGAGAAATTGTTAAGTGGAAGTGAGAGCTCATCCAAAAAAAGACAGAGAAAGAAA
AAAGAAAAGAAGAAATCTGGTAGGTATTCATCTTCTTCTTCATCAAGCTCTGATTCTTCCAGCAGTTCTTCTGATTCTGAAGATGAGGATAAGAAACAAGGAAAACGGAGAAAGAAAAAGAAGAACCG
TTCACATAAATCTTCTGAAAGCTCCATGTCAGAAACTGAATCAGACAGTAAGGATAGTTTAAAAAAGAAAAAGAAGTCAAAAGATGGAACTGAGAAAGAAAAGGATATTAAAGGACTCAGCAAAAAGA
GAAAGATGTATTCTGAAGATAAACCTTTATCATCTGAGTCCTTGTCAGAATCAGAGTATATTGAGGAGGTGCGAGCAAAAAAGAAGAAAAGCAGTGAAGAACGAGAAAAAGCAACAGAAAAAACAAAA
AAGAAAAAGAAGCATAAGAAACACAGTAAGAAGAAGAAAAAGAAGGCTGCTAGTTCAAGTCCTGACTCACCGTAACATTAGGAAAAATCAGGATTCCCTTATAAAGAAAGTGCAATGTCTGAGGAAAT
TTCAACTGTGAAAACTACAACATATTTACTAAAATGCATGAATTTTCTTGTTTTTAGAATTATTCCTGGACTATTCAGTAGCCACTCAGATGCCACTGTGTGAAAGGGCCATAAATGTTGCCTGCTGC
TTGAACATCTATTTTTTTCTCTTCCAGTGCTTGATAACTCTGGGAGATAATACACTGCAGTCGTACTAGTGGTTAAGATATTTGGGAATAAAATTAATACTTTTGACTAGAAGCGTCTAAGGATAAAC
CAACAGAAATTGAATCTGGATACATCTTTAAGATGTAATCAGAAATGACCAGATGACTCTAGTTAGAATTTTTGAAGGAGGGATTACATTAATATTTCAAAACCCTTACTCTGTAGATAAGTGTAGTT
TAATTTTTTCCCCTCGTATACTTTTATTTACCTGGGGAAGGAGCTTTTAGGGTTGGGGGGTGGTTTGCTATCTCTTTAGCTAGCAGAATAGTGTGCCTTTGATCCTCACACATCCTGTATTATGGACA
CAGTAGCCATGCTTCACGGGGAGGTCAGAGCTGGCTACCAGCAGTCTTGCCCTTTACTGAGCTTAGTGTCATCCTTGGATGCTGTCATATGCTGCTTTGAGTGAACCAGAGAAACAGCCATTTGCAGC
ATGAGAAAGTCCCCAAAGCTCTGGGATTTACCTCCACTTCAGTAATAATGAATATTTTTTAGCATTAGAATGTGTTATGTCATTTGAATTAATTTTGACTACACTTTGGCTTGGGAGAGGAATTATTT
TAAATAGACATTGGTACTTTTTGAACTTGATAGCTAAAGATTCTAAAATGCATGTTTTATACTAAGTTTTAACCAGTCAGGAAAATTTTATGTAACTAGTGATAGTTTATTTTTTTGTATGAATTTTG
TTTAGGCTGCAATGTTTAGCTTTTGTTAACTCCTCACTCTTGCTGTCTTAAGTTCATTACTATGTTTAATGGCCTACTTGCCAAGATATTTAGCATGTAAAAAGCAGGGTTTTGATTTTAAAAAAAAA
CGGCTTCATATTGAAGCTGAGACTTACAATAACAAGTTGAGTGGCAAGCCTGGTATGCTGTGTCTTATTGCCAGAATCTTAGTAAATGTAATGTTTTAAAAGTTTGTTGTCTTTGTATATTAATAACA
AATTATGACAAGTTAAGTTTAAATAAGAGTTACATTATTGCTC

hide sequence

RefSeq Acc Id:

XM_034964449 ⟹ XP_034820340

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	110,446,977 - 110,476,111 (-)	NCBI
NHGRI_mPanPan1	7	158,711,686 - 158,740,746 (-)	NCBI
Mhudiblu_PPA_v0	7	84,559,264 - 84,588,631 (-)	NCBI

RefSeq Acc Id:

XM_034964450 ⟹ XP_034820341

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	110,446,977 - 110,476,694 (-)	NCBI
NHGRI_mPanPan1	7	158,711,686 - 158,741,352 (-)	NCBI
Mhudiblu_PPA_v0	7	84,559,264 - 84,589,085 (-)	NCBI

RefSeq Acc Id:

XM_055114710 ⟹ XP_054970685

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	110,446,977 - 110,476,691 (-)	NCBI
NHGRI_mPanPan1	7	158,711,686 - 158,741,350 (-)	NCBI


Protein RefSeqs	XP_003809781	(Get FASTA)	NCBI Sequence Viewer
	XP_034820340	(Get FASTA)	NCBI Sequence Viewer
	XP_034820341	(Get FASTA)	NCBI Sequence Viewer
	XP_054970685	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000030224.1
	ENSPPAP00000030230.1

RefSeq Acc Id:	XP_003809781 ⟸ XM_003809733
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BKK1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQ GKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSKKKKKKAASSSPDSP hide sequence

RefSeq Acc Id:	XP_034820341 ⟸ XM_034964450
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_034820340 ⟸ XM_034964449
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSPPAP00000030224 ⟸ ENSPPAT00000053083

Ensembl Acc Id:

ENSPPAP00000030230 ⟸ ENSPPAT00000053089

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000038105	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000053083.1	UniProtKB/TrEMBL
	ENSPPAT00000053089.1	UniProtKB/TrEMBL
InterPro	Fam133	UniProtKB/TrEMBL
KEGG Report	pps:100981813	UniProtKB/TrEMBL
NCBI Gene	FAM133B	ENTREZGENE
PANTHER	PROTEIN FAM133B	UniProtKB/TrEMBL
	PTHR31911	UniProtKB/TrEMBL
UniProt	A0A2R9BKK1	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BKP1_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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