| Gene: LRRIQ3 (leucine rich repeats and IQ motif containing 3) Pan paniscus |
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Analyze |
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| Symbol: |
LRRIQ3 |
| Name: |
leucine rich repeats and IQ motif containing 3 |
| RGD ID: |
11917458 |
| Description: |
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| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
leucine-rich repeat and IQ domain-containing protein 3 |
| RGD Orthologs |
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| Alliance Orthologs |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly |
| Position: |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 152,681,059 - 152,853,560 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 151,840,235 - 152,012,487 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 73,255,053 - 73,427,257 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 75,231,190 - 75,403,524 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 75,231,191 - 75,389,032 (-) | Ensembl | panpan1.1 | | panPan2 | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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References
Additional References at PubMed
Genomics
Comparative Map Data
LRRIQ3
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 152,681,059 - 152,853,560 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 151,840,235 - 152,012,487 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 73,255,053 - 73,427,257 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 75,231,190 - 75,403,524 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 75,231,191 - 75,389,032 (-) | Ensembl | panpan1.1 | | panPan2 | |
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LRRIQ3
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 74,026,015 - 74,198,176 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 74,026,015 - 74,198,187 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 74,491,699 - 74,663,860 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 74,264,287 - 74,436,459 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 1 | 72,737,273 - 72,909,434 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | p31.1 | NCBI | | | | | HuRef | 1 | 72,626,631 - 72,798,771 (-) | NCBI | | HuRef | | | CHM1_1 | 1 | 74,607,397 - 74,779,550 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 73,867,620 - 74,039,753 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Lrriq3
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 3 | 154,799,032 - 154,899,915 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 3 | 154,799,071 - 154,899,917 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 3 | 155,093,395 - 155,194,278 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 3 | 155,093,434 - 155,194,280 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 3 | 154,756,398 - 154,857,242 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 3 | 155,028,832 - 155,129,442 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 3 | 161,551,401 - 161,652,357 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | H4 | NCBI | | | | | cM Map | 3 | 79.54 | NCBI | | | | |
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Lrriq3
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 246,778,759 - 246,871,284 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 244,119,975 - 244,214,590 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 244,126,200 - 244,212,339 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 2 | 251,882,192 - 251,974,502 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 2 | 249,775,996 - 249,868,305 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 2 | 244,716,369 - 244,808,592 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 2 | 261,403,040 - 261,499,893 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 2 | 261,402,980 - 261,499,891 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 280,074,848 - 280,166,764 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 2 | 252,886,022 - 253,060,065 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 2 | 235,979,540 - 236,070,905 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | q45 | NCBI | | | | |
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Lrriq3
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955423 | 18,443,825 - 18,585,996 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955423 | 18,438,848 - 18,585,627 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LRRIQ3
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 6 | 72,138,908 - 72,306,371 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 6 | 72,157,015 - 72,305,934 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 6 | 74,804,564 - 74,974,401 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 6 | 72,734,879 - 72,904,691 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 6 | 72,752,919 - 72,905,655 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 6 | 72,255,897 - 72,425,687 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 6 | 72,175,102 - 72,344,990 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 6 | 72,670,776 - 72,840,639 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Lrriq3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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LRRIQ3
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 6 | 138,964,509 - 139,151,925 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 138,950,285 - 139,152,645 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 128,722,845 - 128,766,240 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LRRIQ3
(Chlorocebus sabaeus - green monkey) |
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Lrriq3
(Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
Sequence
| Ensembl Acc Id: |
ENSPPAT00000051360 ⟹ ENSPPAP00000028513 |
| Type: |
CODING |
| Position: |
| Bonobo Assembly | Chr | Position (strand) | Source |
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PanPan1.1 Ensembl | 1 | 75,231,191 - 75,389,032 (-) | Ensembl |
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| Ensembl Acc Id: |
ENSPPAT00000051363 ⟹ ENSPPAP00000028516 |
| Type: |
CODING |
| Position: |
| Bonobo Assembly | Chr | Position (strand) | Source |
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PanPan1.1 Ensembl | 1 | 75,231,191 - 75,389,032 (-) | Ensembl |
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| Ensembl Acc Id: |
ENSPPAT00000051366 ⟹ ENSPPAP00000028519 |
| Type: |
CODING |
| Position: |
| Bonobo Assembly | Chr | Position (strand) | Source |
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PanPan1.1 Ensembl | 1 | 75,309,417 - 75,389,032 (-) | Ensembl |
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| Ensembl Acc Id: |
ENSPPAT00000051368 ⟹ ENSPPAP00000028521 |
| Type: |
CODING |
| Position: |
| Bonobo Assembly | Chr | Position (strand) | Source |
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PanPan1.1 Ensembl | 1 | 75,386,096 - 75,389,032 (-) | Ensembl |
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| RefSeq Acc Id: |
XM_003830588 ⟹ XP_003830636 |
| Type: |
CODING |
| Position: |
| Bonobo Assembly | Chr | Position (strand) | Source |
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NHGRI_mPanPan1-v2 | 1 | 152,681,059 - 152,853,560 (+) | NCBI | NHGRI_mPanPan1 | 1 | 151,840,235 - 152,012,487 (+) | NCBI | Mhudiblu_PPA_v0 | 1 | 73,255,053 - 73,427,257 (-) | NCBI | PanPan1.1 | 1 | 75,231,412 - 75,403,524 (-) | NCBI |
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| Sequence: |
GTCGCCCACGTAACCACGCCCCCGGAGCGCCTTGGCTGGCGCCCGGAAAACCATGATGTGGAGA
ACTTGGATGTTGTCTTGTTTCTCTAGCAACGGTCTCAGGAGCAGATGGCCACCCAGCGATTTGT
CTGACTGTGTTGGGGCTGGGCCACTTGTCTCCAACTCATAAGGGCTTGCAGCCCAGTTGACCCG
ATGTTTCATGGAACAATCACAGAAGAGCTAACCAGTCATGAAGAATGGAGTCACTATAATGAAA
ACATAAGAGAAGGTCAAAAAGATTTTGTTTTTGTGAAGTTCAATGGCCTTCATTTAAAGTCTAT
GGAAAATTTGCAGTCTTGCATCTCTCTTAGAGTATGCATCTTCTCAAACAATTTTATTACAGAT
ATTCATCCACTTCAAAGTTGTATAAAATTAATCAAACTTGATCTCCATGGAAATCAGATAAAGA
GTCTACCAAATACCAAATTTTGGAATGGATTGAAGAACCTAAAACTACTCTATCTTCATGACAA
TGGGTTTGCAAAGTTAAAGAATATATGTGTATTATCTGCCTGTCCAACCCTCATTGCCCTCACT
ATGTTTGATTGTCCAGTAAGCCTTAAAAAAGGATATAGACATGTTCTTGTTAACAGTATATGGC
CTCTCAAAGCGCTGGATCATCATGTGATTTCTGATGAAGAAATAATTCAGAACTGGCATCTTCC
TGAAAGATTCAAAGCATGTAACCATCGACTTTTCTTTAATTTCTGCCCAGCTTTGAGAAAGGGA
ACAACCTATGAAGAGGAAATTAATAATATTAAACATATTACTTCAAAAATTAATGCAATTCTGG
CTCATAATTCACCAGTTTTGATTGTTCAAAGATGGATACGTGGTTTCTTAGTTAGAAAAAATTT
GAGCCCTGTGTTTTTCCACAAAAAAAAACAGCAGGAAAAAATTATTAGAGGATATGAAACAAAA
TGGATTTACATAACCAAAGGGTATGAAGATAAGCTCCTTAAGGATCTCTTTTTCAAACCTGAAA
CTAATATAAAAGGAAAGCTTGCATATTGGAAACATAATATATGTTATCCTGTTGATTTAAAAAA
TTCCAGTGAACACAGAAAACATGTGTCATCTATTTTATGTGAATTAAAACCAAAAGATCTAGGC
ATGAAATCAAAAACATCAAGACATCTCATTCAAAAAGGTCAGGAGTCTGAAGATGAAATTGTGG
ATGAAAAATTGGATGCCAGTTTTAGGATATCAGTTTTCAAACTACCCATATACACTTCAGGTTC
ATTGAAGAATAATGCAGTATTGAGAGAGAAAAAACAACATTTTTTTCCTGCATATCCTCAGCCA
ATCTATACTACTCATCCAAAGCCAATCATTAAAAAAGACATACGATTGGAGCGGAGTATGAAAG
AGTTTTTTGCAACACAAAGAGCTGGTATGAAACTCCGAACATTTAGTGATATTGACAAATATTA
CACAGAACAAAAGAAGCAGGAATACCATAAAGAAAAAGTAAGAGTTGTAGCCATGGCACAGGTT
GCTCGAGAAAGAGTTAGAGTAACTGTTAATGAACATTTGAGTCAGAAAAAATATGCTACACAAA
AACGAATTGAAGAAAATAAAGAGACAATTCAGAACAGTTTACGACAAGTTTGGCAAAACAGATT
CAACTACCTTGAAAAAGCTAGAGAGAGAAAAGCTCTGTTTCTAAAAGAAAAATCCCAAAAGGCT
GCAGAGCGTTTATTAGTTCAAAACTTAAATAATGAGCGCACTCTTTTGACCAGAGGACTACTTA
AAATTGACAGACTGAAGAAGAATGAGGCTGTCCTAAAAGAGAAAAGCCTGATTGTTAAGCAAAA
ACTAAAAGCAGAAAAATATGGAAAGAATTTACTTAAAGAAATGAAAAAAGTTAGATCTCAAGAA
ATATATAAAAGACATTGTGAAGAAAAATTTGTTATGGATATGATTGCCTTTGAAAAAGCCTGTG
AAAGACTTCAAGATGCTAAAACAAAAGTAGCAATTGTGAAAACAAATTTAGACTTTAAAGTTCC
CAATGGACTGATAAAATGAATCAATGCCAGATCACATCCTATGATCATCTTAAATTATAGTCAT
TATTTTTAGTTGAAGGAATTTGAAATAATACTCTAAAGCAAGAAATACTCTACATCACAAGATG
GATTTATATATAAGTCTTCTAAAAATATAAAGATTAGTTAAAATGTTTCTCTTTTTGGTCATAA
TTTAACTTAAAGTTGACTTAGCACCTCTGAAAAATTTCTTAGATCAGATGCCTAAGGAACAATT
AAACTAATTTAATTTATTGCAGACAATGTTGCAATGACATTGCTGATATTCTGTTTCATATTCT
TTCTAAATATAGCAATTCATAAGCTAATTTAGGTTTTTCTGGAAACCTTAGAATAGTAATTTCT
ACTCCAACTGCTGACTTTTATTAAGACACTGTGTACGTTGATGACTTTTATTACCTGCTTTTAT
ATATGTAATTATATTTCCTGCTTATTTTGTTAAAACAATTTCTGAATTTATTTTTTAAAGTATG
GTTTCAATATTTTGTCAGTGATATATGCTGTTGTAAAAATTCAGAAAATATGAACTATGAAAAG
TAAATTAAACATTCTTATCACCT
hide sequence
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| RefSeq Acc Id: |
XP_003830636 ⟸ XM_003830588 |
| - UniProtKB: |
A0A2R9BGU4 (UniProtKB/TrEMBL), A0A2R9BPE0 (UniProtKB/TrEMBL) |
| - Sequence: |
MFHGTITEELTSHEEWSHYNENIREGQKDFVFVKFNGLHLKSMENLQSCISLRVCIFSNNFITD
IHPLQSCIKLIKLDLHGNQIKSLPNTKFWNGLKNLKLLYLHDNGFAKLKNICVLSACPTLIALT
MFDCPVSLKKGYRHVLVNSIWPLKALDHHVISDEEIIQNWHLPERFKACNHRLFFNFCPALRKG
TTYEEEINNIKHITSKINAILAHNSPVLIVQRWIRGFLVRKNLSPVFFHKKKQQEKIIRGYETK
WIYITKGYEDKLLKDLFFKPETNIKGKLAYWKHNICYPVDLKNSSEHRKHVSSILCELKPKDLG
MKSKTSRHLIQKGQESEDEIVDEKLDASFRISVFKLPIYTSGSLKNNAVLREKKQHFFPAYPQP
IYTTHPKPIIKKDIRLERSMKEFFATQRAGMKLRTFSDIDKYYTEQKKQEYHKEKVRVVAMAQV
ARERVRVTVNEHLSQKKYATQKRIEENKETIQNSLRQVWQNRFNYLEKARERKALFLKEKSQKA
AERLLVQNLNNERTLLTRGLLKIDRLKKNEAVLKEKSLIVKQKLKAEKYGKNLLKEMKKVRSQE
IYKRHCEEKFVMDMIAFEKACERLQDAKTKVAIVKTNLDFKVPNGLIK
hide sequence
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| Ensembl Acc Id: |
ENSPPAP00000028516 ⟸ ENSPPAT00000051363 |
| Ensembl Acc Id: |
ENSPPAP00000028513 ⟸ ENSPPAT00000051360 |
| Ensembl Acc Id: |
ENSPPAP00000028521 ⟸ ENSPPAT00000051368 |
| Ensembl Acc Id: |
ENSPPAP00000028519 ⟸ ENSPPAT00000051366 |
Additional Information
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