Lrriq3 (leucine rich repeats and IQ motif containing 3) - Rat Genome Database

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Gene: Lrriq3 (leucine rich repeats and IQ motif containing 3) Heterocephalus glaber
Analyze
Symbol: Lrriq3
Name: leucine rich repeats and IQ motif containing 3
RGD ID: 18935215
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat and IQ domain-containing protein 3; Leucine-rich repeat-containing protein 53
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474222,479,053 - 22,611,635 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Lrriq3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474222,479,053 - 22,611,635 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LRRIQ3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,026,015 - 74,198,176 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,026,015 - 74,198,187 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,491,699 - 74,663,860 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,264,287 - 74,436,459 (-)NCBINCBI36Build 36hg18NCBI36
Celera172,737,273 - 72,909,434 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef172,626,631 - 72,798,771 (-)NCBIHuRef
CHM1_1174,607,397 - 74,779,550 (-)NCBICHM1_1
T2T-CHM13v2.0173,867,620 - 74,039,753 (-)NCBIT2T-CHM13v2.0
Lrriq3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393154,799,032 - 154,899,915 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3154,799,071 - 154,899,917 (+)EnsemblGRCm39 Ensembl
GRCm383155,093,395 - 155,194,278 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3155,093,434 - 155,194,280 (+)EnsemblGRCm38mm10GRCm38
MGSCv373154,756,398 - 154,857,242 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363155,028,832 - 155,129,442 (+)NCBIMGSCv36mm8
Celera3161,551,401 - 161,652,357 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map379.54NCBI
Lrriq3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82246,778,759 - 246,871,284 (+)NCBIGRCr8
mRatBN7.22244,119,975 - 244,214,590 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2244,126,200 - 244,212,339 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2251,882,192 - 251,974,502 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02249,775,996 - 249,868,305 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02244,716,369 - 244,808,592 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02261,403,040 - 261,499,893 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2261,402,980 - 261,499,891 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02280,074,848 - 280,166,764 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42252,886,022 - 253,060,065 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2235,979,540 - 236,070,905 (+)NCBICelera
Cytogenetic Map2q45NCBI
Lrriq3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542318,443,825 - 18,585,996 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542318,438,848 - 18,585,627 (+)NCBIChiLan1.0ChiLan1.0
LRRIQ3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21152,681,059 - 152,853,560 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11151,840,235 - 152,012,487 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,255,053 - 73,427,257 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,231,190 - 75,403,524 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,231,191 - 75,389,032 (-)Ensemblpanpan1.1panPan2
LRRIQ3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1672,138,908 - 72,306,371 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl672,157,015 - 72,305,934 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha674,804,564 - 74,974,401 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0672,734,879 - 72,904,691 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl672,752,919 - 72,905,655 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1672,255,897 - 72,425,687 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0672,175,102 - 72,344,990 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0672,670,776 - 72,840,639 (+)NCBIUU_Cfam_GSD_1.0
Lrriq3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505885,854,704 - 86,035,216 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365711,365,550 - 1,522,691 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRIQ3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6138,964,509 - 139,151,925 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16138,950,285 - 139,152,645 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26128,722,845 - 128,766,240 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRIQ3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12058,953,280 - 59,116,252 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603358,332,857 - 58,498,845 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004841440   ⟹   XP_004841497
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474222,479,053 - 22,611,635 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004841497 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA99201 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004841497   ⟸   XM_004841440


Additional Information

Database Acc Id Source(s)
NCBI Gene Lrriq3 ENTREZGENE