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Gene: TSSK6 (testis specific serine kinase 6) Pan paniscus

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Symbol:

TSSK6

Name:

testis specific serine kinase 6

RGD ID:

11907727

Description:

ENCODES a protein that exhibits ATP binding (inferred); magnesium ion binding (inferred); protein serine/threonine kinase activity (inferred); INVOLVED IN peptidyl-serine phosphorylation (ortholog); protein phosphorylation (ortholog); FOUND IN axonemal microtubule doublet inner sheath (ortholog); sperm flagellum (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

testis-specific serine/threonine-protein kinase 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	24,368,803 - 24,377,963 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	23,376,046 - 23,384,379 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	18,952,643 - 18,954,101 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	19,948,494 - 19,951,687 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,950,614 - 19,951,435 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

flagellated sperm motility (IEA)

intracellular signal transduction (IEA)

microtubule cytoskeleton organization (IEA)

peptidyl-serine phosphorylation (ISO)

protein phosphorylation (ISO)

sperm DNA condensation (IEA)

spermatogenesis (IEA)

Cellular Component

axonemal microtubule doublet inner sheath (IEA,ISO)

cytoplasm (IEA)

sperm flagellum (IEA,ISO)

Molecular Function

ATP binding (IEA)

magnesium ion binding (IEA)

protein binding (ISO)

protein serine/threonine kinase activity (IEA)

protein-containing complex binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TSSK6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	24,368,803 - 24,377,963 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	23,376,046 - 23,384,379 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	18,952,643 - 18,954,101 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	19,948,494 - 19,951,687 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,950,614 - 19,951,435 (-)	Ensembl	panpan1.1		panPan2

TSSK6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	19,514,219 - 19,515,548 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	19,512,418 - 19,515,548 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	19,625,028 - 19,626,357 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	19,486,028 - 19,487,469 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	19,529,087 - 19,530,528 (-)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	19,187,321 - 19,188,762 (-)	NCBI		HuRef
CHM1_1	19	19,625,724 - 19,627,165 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	19,651,706 - 19,653,035 (-)	NCBI		T2T-CHM13v2.0

Tssk6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,354,834 - 70,356,168 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	70,354,834 - 70,356,168 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	69,902,184 - 69,903,518 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	69,902,184 - 69,903,518 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,426,114 - 72,427,417 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	72,831,204 - 72,832,507 (+)	NCBI		MGSCv36	mm8
Celera	8	72,462,020 - 72,463,323 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.05	NCBI

Tssk6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	19,551,757 - 19,559,918 (-)	NCBI		GRCr8
mRatBN7.2	16	19,523,626 - 19,526,074 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	19,517,334 - 19,526,090 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	19,565,417 - 19,566,718 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,703,631 - 20,704,932 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,618,400 - 19,619,701 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	21,272,282 - 21,274,756 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	21,273,387 - 21,274,688 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	21,189,471 - 21,190,772 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	20,009,499 - 20,010,800 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	19,713,817 - 19,715,118 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Tssk6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,433,955 - 2,434,776 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,433,855 - 2,434,864 (+)	NCBI	ChiLan1.0	ChiLan1.0

TSSK6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	43,730,769 - 43,732,179 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	43,730,907 - 43,731,728 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	43,648,310 - 43,649,731 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	44,218,731 - 44,220,145 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	44,218,873 - 44,219,694 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	43,456,322 - 43,457,736 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	43,865,730 - 43,867,144 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	44,141,362 - 44,142,783 (+)	NCBI		UU_Cfam_GSD_1.0

Tssk6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	202,405,185 - 202,406,630 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	1,954,517 - 1,955,338 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	1,953,797 - 1,955,753 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSSK6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	58,411,122 - 58,411,943 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	58,411,122 - 58,411,943 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	58,286,057 - 58,286,878 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSSK6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	17,974,174 - 17,975,996 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	17,974,913 - 17,975,734 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	1,325,901 - 1,327,361 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tssk6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	2,310,872 - 2,311,693 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	2,310,456 - 2,311,803 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008970976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000024499 ⟹ ENSPPAP00000005405

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	19,950,614 - 19,951,435 (-)	Ensembl

RefSeq Acc Id:

XM_008970976 ⟹ XP_008969224

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	24,368,803 - 24,377,963 (-)	NCBI
NHGRI_mPanPan1	19	23,376,046 - 23,384,379 (-)	NCBI
Mhudiblu_PPA_v0	19	18,952,643 - 18,954,101 (-)	NCBI
PanPan1.1	19	19,950,226 - 19,951,687 (-)	NCBI

Sequence:

show sequence

CAGGGAGGCTCGGGTGGCCCCGGGGCGGGGTCCCGGACCCCCACCCTAAGGTGGAGTGACGCCC
GCAGTCACTTCACAAGGCAAAAATTGTTACGGGGCAATAAAGGGCACAGCAGCGGCCAATGTCT
GGCAGTGGGCACATGGGGGTGCGGGGGTGTAGGTGCCAAGCGCCATGGCTTAGACCCGAGATTG
GAGTCCGGCCGCCCCCCGACAGCAGCCGCCTCCTGCCCCCCGTGCGCCCTAGGCGCCACCATGT
CGGGAGACAAACTTCTGAGCGAACTCGGTTATAAGCTGGGCCGCACAATTGGAGAGGGCAGCTA
CTCCAAGGTGAAGGTGGCCACATCCAAGAAGTACAAGGGTACCGTGGCCATCAAGGTGGTGGAC
CGGCGGCGAGCGCCCCCGGACTTCGTCAACAAGTTCCTGCCGCGAGAGCTGTCCATCCTGCGGG
GCGTGCGACACCCGCACATCGTGCACGTCTTCGAGTTCATCGAGGTGTGCAACGGGAAACTGTA
CATCGTGATGGAAGCGGCCGCCACCGACCTGCTGCAAGCCGTGCAGCGCAGCGGGCGCATCCCC
GGAGTTCAGGCGCGCGACCTCTTTGCGCAGATCGCCGGCGCCGTGCGCTACCTGCACGATCACC
ACCTGGTGCACCGCGACCTCAAGTGCGAAAACGTGCTGCTGAGCCCGGACGAGCGCCGCGTCAA
GCTCACCGACTTCGGCTTCGGCCGCCAGGCCCATGGCTACCCAGACCTGAGCACCACCTACTGC
GGCTCAGCCGCCTACGCGTCACCCGAGGTGCTCCTGGGCATCCCCTACGACCCCAAGAAGTACG
ATGTGTGGAGCATGGGCGTCGTGCTCTACGTCATGGTCACCGGGTGCATGCCCTTCGACGACTC
GGACATCGCCGGCCTGCCCCGGCGCCAGAAACGCGGCGTGCTCTACCCCGAAGGCCTCGAGCTC
TCCGAGCGCTGCAAGGCCCTGATCGCCGAGCTGCTGCAGTTCAGCCCGTCCGCCAGGCCCTCCG
CGGGCCAGGTAGCGCGCAACTGCTGGCTGCGCGCCGGCGACTCCGGCTAGAAGCCGGGTGGTTC
CAGCCATTCCTGCAGCCAAAGGCACTGGGCTAGCGCGGCGCACGCGCAAGAGGCGCGCTTCGAG
GGAATATGCGAAGCTGCCGCGTGCTGCTGCACATGCGCTTTTTCCCTTCCACTTCCCTCCCTTT
CTTCCCACGGGTGAGTCCGCAGTTGCCCTTGTTCGGAATCCACGTTCCCCGCGATCCCGGGAGC
TGGAGGCGCATGCGCATCCGCGATTCCCTGTGACCAGGCCCCGAGAGGGGCGAGACCCTAGGGG
ACGGAAGCATTGCGCCTGCGCGGAACTCTCAGCCTCTGCGCGGAGGGCGTCCTTTCCCAACCAG
CCGTGGGTGCCAGGTTCCCGGTTGGAACCTGCAATAAACTCGCTGTTCCTCGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008969224	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000005405.1

RefSeq Acc Id:

XP_008969224 ⟸ XM_008970976

- UniProtKB:

A0A2R8ZN56 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGDKLLSELGYKLGRTIGEGSYSKVKVATSKKYKGTVAIKVVDRRRAPPDFVNKFLPRELSIL
RGVRHPHIVHVFEFIEVCNGKLYIVMEAAATDLLQAVQRSGRIPGVQARDLFAQIAGAVRYLHD
HHLVHRDLKCENVLLSPDERRVKLTDFGFGRQAHGYPDLSTTYCGSAAYASPEVLLGIPYDPKK
YDVWSMGVVLYVMVTGCMPFDDSDIAGLPRRQKRGVLYPEGLELSERCKALIAELLQFSPSARP
SAGQVARNCWLRAGDSG

hide sequence

Ensembl Acc Id:

ENSPPAP00000005405 ⟸ ENSPPAT00000024499

Protein Domains

Protein kinase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000022354	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000024499.1	UniProtKB/TrEMBL
Gene3D-CATH	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
InterPro	Kinase-like_dom_sf	UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/TrEMBL
	TSSK6_STKc	UniProtKB/TrEMBL
KEGG Report	pps:100990049	UniProtKB/TrEMBL
NCBI Gene	TSSK6	ENTREZGENE
PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	UniProtKB/TrEMBL
	TESTIS-SPECIFIC SERINE_THREONINE-PROTEIN KINASE 1	UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/TrEMBL
PIRSF	Integrin-linked_kinase	UniProtKB/TrEMBL
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
SMART	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56112	UniProtKB/TrEMBL
UniProt	A0A2R8ZN56	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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