NUTM1 (NUT midline carcinoma family member 1) - Rat Genome Database

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Gene: NUTM1 (NUT midline carcinoma family member 1) Pan paniscus
Analyze
Symbol: NUTM1
Name: NUT midline carcinoma family member 1
RGD ID: 11906908
Description: ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NUT family member 1; protein NUT-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21623,125,213 - 23,142,965 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11527,847,105 - 27,864,735 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01512,852,280 - 12,868,873 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11531,686,443 - 31,703,128 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1531,686,443 - 31,703,128 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
NUTM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21623,125,213 - 23,142,965 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11527,847,105 - 27,864,735 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01512,852,280 - 12,868,873 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11531,686,443 - 31,703,128 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1531,686,443 - 31,703,128 (+)Ensemblpanpan1.1panPan2
NUTM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381534,343,315 - 34,357,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1534,343,315 - 34,357,737 (+)EnsemblGRCh38hg38GRCh38
GRCh371534,635,516 - 34,649,936 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361532,425,358 - 32,437,225 (+)NCBINCBI36Build 36hg18NCBI36
Celera1511,440,706 - 11,454,967 (+)NCBICelera
Cytogenetic Map15q14NCBI
HuRef1511,501,494 - 11,515,478 (+)NCBIHuRef
CHM1_11534,756,122 - 34,767,984 (+)NCBICHM1_1
T2T-CHM13v2.01532,141,620 - 32,158,194 (+)NCBIT2T-CHM13v2.0
Nutm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392112,078,293 - 112,089,636 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2112,078,293 - 112,089,636 (-)EnsemblGRCm39 Ensembl
GRCm382112,247,948 - 112,259,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2112,247,948 - 112,259,291 (-)EnsemblGRCm38mm10GRCm38
MGSCv372112,088,105 - 112,099,448 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362112,048,787 - 112,060,130 (-)NCBIMGSCv36mm8
Celera2113,405,375 - 113,416,686 (-)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.97NCBI
Nutm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83119,507,908 - 119,518,709 (-)NCBIGRCr8
mRatBN7.2399,053,510 - 99,064,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl399,053,510 - 99,064,311 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3102,681,352 - 102,692,140 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03111,280,344 - 111,291,132 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03108,975,966 - 108,986,767 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03103,733,981 - 103,745,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3103,734,435 - 103,745,236 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03110,328,291 - 110,340,104 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4398,091,935 - 98,102,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera398,039,387 - 98,050,188 (-)NCBICelera
Cytogenetic Map3q35NCBI
Nutm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955416258,202 - 270,075 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955416258,304 - 271,670 (-)NCBIChiLan1.0ChiLan1.0
NUTM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.130755,267 - 766,473 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha30799,677 - 810,656 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.030851,503 - 862,491 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl30851,503 - 859,847 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.130799,915 - 810,879 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.030898,795 - 909,833 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0301,026,482 - 1,037,456 (-)NCBIUU_Cfam_GSD_1.0
Nutm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864079,308,900 - 79,321,348 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366732,832,400 - 2,842,703 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366732,832,447 - 2,843,428 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUTM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl780,149,619 - 80,160,620 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1780,149,764 - 80,159,497 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2786,146,938 - 86,156,848 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUTM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12648,547,889 - 48,560,897 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2648,548,133 - 48,560,731 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604892,342,855 - 92,359,924 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nutm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248254,128,279 - 4,139,185 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248254,126,311 - 4,140,100 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000031194   ⟹   ENSPPAP00000008558
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1531,686,443 - 31,703,128 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000031195   ⟹   ENSPPAP00000008559
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1531,686,825 - 31,702,886 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000031197   ⟹   ENSPPAP00000008561
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1531,688,680 - 31,703,128 (+)Ensembl
RefSeq Acc Id: XM_003804942   ⟹   XP_003804990
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21623,125,213 - 23,142,965 (+)NCBI
NHGRI_mPanPan11527,847,105 - 27,864,735 (+)NCBI
Mhudiblu_PPA_v01512,852,280 - 12,868,873 (+)NCBI
PanPan1.11531,686,443 - 31,703,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055098819   ⟹   XP_054954794
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21623,125,269 - 23,142,965 (+)NCBI
NHGRI_mPanPan11527,847,105 - 27,864,735 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003804990 (Get FASTA)   NCBI Sequence Viewer  
  XP_054954794 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000008558.1
  ENSPPAP00000008559.1
  ENSPPAP00000008561.1
Reference Protein Sequences
RefSeq Acc Id: XP_003804990   ⟸   XM_003804942
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A006 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000008559   ⟸   ENSPPAT00000031195
RefSeq Acc Id: ENSPPAP00000008558   ⟸   ENSPPAT00000031194
RefSeq Acc Id: ENSPPAP00000008561   ⟸   ENSPPAT00000031197
RefSeq Acc Id: XP_054954794   ⟸   XM_055098819
- Peptide Label: isoform X1
Protein Domains
Nuclear Testis protein N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027522 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031194.1 UniProtKB/TrEMBL
  ENSPPAT00000031195.1 UniProtKB/TrEMBL
  ENSPPAT00000031197.1 UniProtKB/TrEMBL
InterPro NUT UniProtKB/TrEMBL
  NUT_N UniProtKB/TrEMBL
KEGG Report pps:100994856 UniProtKB/TrEMBL
NCBI Gene NUTM1 ENTREZGENE
PANTHER NUT FAMILY MEMBER 1 UniProtKB/TrEMBL
  PTHR22879 UniProtKB/TrEMBL
Pfam NUT UniProtKB/TrEMBL
UniProt A0A2R8ZUB4_PANPA UniProtKB/TrEMBL
  A0A2R8ZVH9_PANPA UniProtKB/TrEMBL
  A0A2R9A006 ENTREZGENE, UniProtKB/TrEMBL