Nutm1 (NUT midline carcinoma family member 1) - Rat Genome Database

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Gene: Nutm1 (NUT midline carcinoma family member 1) Chinchilla lanigera
Analyze
Symbol: Nutm1
Name: NUT midline carcinoma family member 1
RGD ID: 8935343
Description: ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NUT family member 1; NUT midline carcinoma, family member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955416258,202 - 270,075 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955416258,304 - 271,670 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Nutm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955416258,202 - 270,075 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955416258,304 - 271,670 (-)NCBIChiLan1.0ChiLan1.0
NUTM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381534,343,315 - 34,357,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1534,343,315 - 34,357,737 (+)EnsemblGRCh38hg38GRCh38
GRCh371534,635,516 - 34,649,936 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361532,425,358 - 32,437,225 (+)NCBINCBI36Build 36hg18NCBI36
Celera1511,440,706 - 11,454,967 (+)NCBICelera
Cytogenetic Map15q14NCBI
HuRef1511,501,494 - 11,515,478 (+)NCBIHuRef
CHM1_11534,756,122 - 34,767,984 (+)NCBICHM1_1
T2T-CHM13v2.01532,141,620 - 32,158,194 (+)NCBIT2T-CHM13v2.0
Nutm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392112,078,293 - 112,089,636 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2112,078,293 - 112,089,636 (-)EnsemblGRCm39 Ensembl
GRCm382112,247,948 - 112,259,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2112,247,948 - 112,259,291 (-)EnsemblGRCm38mm10GRCm38
MGSCv372112,088,105 - 112,099,448 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362112,048,787 - 112,060,130 (-)NCBIMGSCv36mm8
Celera2113,405,375 - 113,416,686 (-)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.97NCBI
Nutm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83119,507,908 - 119,518,709 (-)NCBIGRCr8
mRatBN7.2399,053,510 - 99,064,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl399,053,510 - 99,064,311 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3102,681,352 - 102,692,140 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03111,280,344 - 111,291,132 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03108,975,966 - 108,986,767 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03103,733,981 - 103,745,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3103,734,435 - 103,745,236 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03110,328,291 - 110,340,104 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4398,091,935 - 98,102,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera398,039,387 - 98,050,188 (-)NCBICelera
Cytogenetic Map3q35NCBI
NUTM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21623,125,213 - 23,142,965 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11527,847,105 - 27,864,735 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01512,852,280 - 12,868,873 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11531,686,443 - 31,703,128 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1531,686,443 - 31,703,128 (+)Ensemblpanpan1.1panPan2
NUTM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.130755,267 - 766,473 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha30799,677 - 810,656 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.030851,503 - 862,491 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl30851,503 - 859,847 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.130799,915 - 810,879 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.030898,795 - 909,833 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0301,026,482 - 1,037,456 (-)NCBIUU_Cfam_GSD_1.0
Nutm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864079,308,900 - 79,321,348 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366732,832,400 - 2,842,703 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366732,832,447 - 2,843,428 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUTM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl780,149,619 - 80,160,620 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1780,149,764 - 80,159,497 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2786,146,938 - 86,156,848 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUTM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12648,547,889 - 48,560,897 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2648,548,133 - 48,560,731 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604892,342,855 - 92,359,924 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nutm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248254,128,279 - 4,139,185 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248254,126,311 - 4,140,100 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014668   ⟹   ENSCLAP00000014510
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955416258,202 - 270,075 (-)Ensembl
RefSeq Acc Id: XM_005381151   ⟹   XP_005381208
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955416258,304 - 271,670 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381208 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014510
  ENSCLAP00000014510.1
Reference Protein Sequences
RefSeq Acc Id: XP_005381208   ⟸   XM_005381151
- UniProtKB: A0A8C2YPV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000014510   ⟸   ENSCLAT00000014668
Protein Domains
Nuclear Testis protein N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010017 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014668 ENTREZGENE
  ENSCLAT00000014668.1 UniProtKB/TrEMBL
InterPro NUT UniProtKB/TrEMBL
  NUT_N UniProtKB/TrEMBL
NCBI Gene Nutm1 ENTREZGENE
PANTHER NUT FAMILY MEMBER 1 UniProtKB/TrEMBL
  PTHR22879 UniProtKB/TrEMBL
Pfam NUT UniProtKB/TrEMBL
UniProt A0A8C2YPV4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Nutm1  NUT midline carcinoma family member 1    NUT midline carcinoma, family member 1  Symbol and/or name change 5135510 APPROVED