TCP11 (t-complex 11) - Rat Genome Database

Name: TCP11
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: TCP11 (t-complex 11) Pan paniscus

Analyze

Symbol:

TCP11

Name:

t-complex 11

RGD ID:

11882839

Description:

INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); negative regulation of exocytosis (ortholog); ASSOCIATED WITH genetic disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN sperm midpiece (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

t-complex 11 homolog; T-complex protein 11 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TCP11 (t-complex 11)	NCBI	Ortholog
Mus musculus (house mouse):	Tcp11 (t-complex protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tcp11 (t-complex 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tcp11 (t-complex 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TCP11 (t-complex 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tcp11 (t-complex 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TCP11 (t-complex 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TCP11 (t-complex 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tcp11 (t-complex 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	49,586,447 - 49,617,332 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	45,453,918 - 45,484,796 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	34,680,570 - 34,703,230 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	35,776,683 - 35,799,480 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	35,776,684 - 35,799,480 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

proteasome-associated autoinflammatory syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-activating G protein-coupled receptor signaling pathway (ISO)

germ cell development (IEA)

negative regulation of exocytosis (ISO)

protein kinase A signaling (IEA)

regulation of sperm capacitation (IEA)

Cellular Component

acrosomal vesicle (IEA)

sperm flagellum (IEA)

sperm midpiece (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TCP11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	49,586,447 - 49,617,332 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	45,453,918 - 45,484,796 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	34,680,570 - 34,703,230 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	35,776,683 - 35,799,480 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	35,776,684 - 35,799,480 (-)	Ensembl	panpan1.1		panPan2

TCP11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	35,118,075 - 35,141,339 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	35,118,071 - 35,148,610 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	35,085,852 - 35,109,116 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	35,193,827 - 35,217,165 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	35,193,826 - 35,217,104	NCBI
Celera	6	36,640,276 - 36,663,005 (-)	NCBI		Celera
Cytogenetic Map	6	p21.31	NCBI
HuRef	6	34,807,960 - 34,830,685 (-)	NCBI		HuRef
CHM1_1	6	35,087,790 - 35,110,958 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	34,940,885 - 34,963,547 (-)	NCBI		T2T-CHM13v2.0

Tcp11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	28,285,725 - 28,299,583 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	28,285,719 - 28,299,613 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	28,066,747 - 28,080,726 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	28,066,745 - 28,080,639 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	28,203,692 - 28,217,584 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	27,794,340 - 27,808,154 (-)	NCBI		MGSCv36	mm8
Celera	17	28,620,099 - 28,633,940 (-)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	14.62	NCBI

Tcp11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	6,128,001 - 6,140,152 (-)	NCBI		GRCr8
mRatBN7.2	20	6,126,267 - 6,138,408 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	6,126,269 - 6,136,055 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	6,839,113 - 6,848,608 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	6,200,930 - 6,210,424 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	6,680,427 - 6,689,847 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	7,645,619 - 7,657,222 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	7,645,626 - 7,654,428 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	9,848,944 - 9,861,154 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	6,283,357 - 6,293,412 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	6,283,585 - 6,293,639 (-)	NCBI
Celera	20	7,686,143 - 7,695,379 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Tcp11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	3,088,915 - 3,188,885 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	3,087,733 - 3,113,771 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCP11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	4,286,863 - 4,306,152 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	4,286,876 - 4,306,273 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	4,302,127 - 4,321,690 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	4,623,940 - 4,643,518 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	4,623,953 - 4,643,560 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	4,282,985 - 4,302,538 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	4,364,243 - 4,383,786 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	4,464,145 - 4,483,708 (-)	NCBI		UU_Cfam_GSD_1.0

Tcp11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	39,879,524 - 39,896,634 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	24,063,854 - 24,080,729 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	24,063,854 - 24,080,677 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCP11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	31,007,474 - 31,114,734 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	31,007,460 - 31,161,082 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	35,783,078 - 35,807,520 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCP11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	36,865,236 - 37,008,100 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	37,003,819 - 37,009,908 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	35,028,215 - 35,051,154 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tcp11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	22,264,830 - 22,282,795 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	22,258,418 - 22,284,562 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003808532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008960599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008960600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000048768 ⟹ ENSPPAP00000025937

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	6	35,776,684 - 35,799,480 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000048770 ⟹ ENSPPAP00000025939

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	6	35,776,881 - 35,798,201 (-)	Ensembl

RefSeq Acc Id:

XM_003808532 ⟹ XP_003808580

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	49,586,447 - 49,617,332 (-)	NCBI
NHGRI_mPanPan1	6	45,453,918 - 45,484,796 (-)	NCBI
Mhudiblu_PPA_v0	6	34,680,570 - 34,703,204 (-)	NCBI
PanPan1.1	6	35,776,683 - 35,799,480 (-)	NCBI

Sequence:

show sequence

TTCTCAGGCCCCGGCCTTTCCCACCGCGCGACGCCCCAACCCGCCGCTCCGCCGCGGTGGTACG
CTCCAGGCCGCCAGGCCGCGAGGCCCCCGAGCGGACGCCAGTGGATGACCCGCGGCGGGGGAGG
AGGAGGGGAGGAGGAGATACCATCAGCAAAATGCCAGACGTCAAGGAGAGTGTGCCCCCGAAAT
ATCCTGGCGACTCAGAGGGCGGGTCCTGTAAGCCCGAAACCTCAGGACTCCCCCAGGAAGACAA
GAGCGGCTCCGAGGATCCCCCTCCCTTTCTTTCTGTCACAGGTCTGACAGAAACCGTTAATGAA
GTTTCCAAGCTGAGCAACAAGATTGGGATGAATTGTGATTACTACATGGAAGAGAAGGTTTTAC
CTCCAAGCAGTCTGGAAGGCAAGGTCAAGGAGACAGTGCACAATGCCTTTTGGGACCATCTTAA
AGAGCAACTATCAGCAACTCCCCCTGACTTCAGCTGTGCTCTTGAACTTCTGAAAGAAATTAAA
GAGATCTTGATATCACTGCTATTACCACGCCAGAACCGCCTGAGAATTGAGATTGAAGAAGCTC
TGGACATGGACTTGCTCAAGCAGGAGGCAGAACATGGGGCCCTGAAAGTCCTCTATCTCTCTAA
GTACGTTCTCAACATGATGGCTTTGCTGTGTGCACCAGTTCGAGATGAAGCAGTGCAGAAACTA
GAAAACATTACGGATCCTGTTTGGCTACTGAGAGGGATCTTCCAGGTTCTGGGCCGGATGAAAA
TGGACATGGTGAACTACACTATCCAGAGCCTCCAACCCCACCTGCAGGAACATTCCATTCAGTA
TGAACGGGCTAAATTCCAGGAACTCCTCAATAAGCAGCCTAGTCTCCTTAATCACACCACCAAA
TGGCTGACCCAAGCAGCAGCAGACCTCACCATGTCACCTCCGACTTGCCCAGACACTTCTGACT
CCTCCAGTGTGGCTGGCCCCTCTCCCAATGAGGCAGCCAACAACCCAGAGCCCCTCAGCCCCAC
AATGGTGCTGTGTCAGGGCTTCTTGAACCTCCTTCTCTGGGACCTTGAAAATGAAGAGTTCCCT
GAGACCCTGCTGATGGACAGAACCCGGCTGCAGGAGCTGAAGTCCCAGTTGCACCAGTTAACCG
TCATGGCCTCAGTCTTGCTGGTGGCCAGTAGTTTCTCTGGCAGTGTTTTGTTTGGCTCACCCCA
ATTTGTAGATAAACTGAAACGCATAACCAAATCCTTGTTGGAAGACTTTCACTCCAGGCCTGAG
GAAGCTATACTGACTGTGAGTGAACAGGTATCTCAGGAAATCCATCAAAGCCTCAAGAATATGG
GCCTTGTTGCTCTAAGCAGTGATAATACAGCATCTCTAATGGGACAGCTCCAGAACATTGCCAA
GAAGGAGAACTGTGTCCGCAGTGTTATTGATCAGCGGATCCATTTGTTTCTCAAATGCTGTTTG
GTTCTTGGTGTGCAGCGGTCTCTATTAGACCTTCCTGGAGGCCTTACTCTCATTGAAGCAGAAC
TGGCAGAACTGGGCCAAAAGTTTGTCAACTTGACACAACACAATCAGCAGGTGTTTGGTCCCTA
CTACACTGAGATCCTAAAAACCCTCATTTCCCCAGCCCAGGCACTGGAAACAAAAGTGGAGTCT
GTTTGATAGCGTCGGCTCAGAGCCCTGGTACCTTGGACCCAAGAGGAGGCCCATCATCTTCCTG
GAGTAACATCACCAGTGACCAGCAGACAGTGAGCTTCTATCCCAGGCCCTGCAGCCAGTACACC
AAGGCTGTAGGGATCAAGCATGTAAACACCAACTGGTCCATACCCATTCATTAATAAACTTCTT
AAGTGCAAGAAA

hide sequence

RefSeq Acc Id:

XM_008960599 ⟹ XP_008958847

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	49,586,447 - 49,609,193 (-)	NCBI
NHGRI_mPanPan1	6	45,453,918 - 45,476,659 (-)	NCBI
Mhudiblu_PPA_v0	6	34,680,570 - 34,703,204 (-)	NCBI
PanPan1.1	6	35,776,684 - 35,799,480 (-)	NCBI

Sequence:

show sequence

TTCTCAGGCCCCGGCCTTTCCCACCGCGCGACGCCCCAACCCGCCGCTCCGCCGCGGTGGTACG
CTCCAGGCCGCCAGGCCGCGAGGCCCCCGAGCGGACGCCAGTGGATGACCCGCGGCGGGGGAGG
AGGAGGGGAGGAGGAGATACCATCAGCAAAATGCCAGACGTCAAGGAGAGTGTGCCCCCGAAAT
ATCCTGGCGACTCAGAGGGCGGGTCCTGTAAGCCCGAAACCTCAGGACTCCCCCAGGAAGACAA
GAGCGGCTCCGAGGATCCCCCTCCCTGTCTGACAGAAACCGTTAATGAAGTTTCCAAGCTGAGC
AACAAGATTGGGATGAATTGTGATTACTACATGGAAGAGAAGGTTTTACCTCCAAGCAGTCTGG
AAGGCAAGGTCAAGGAGACAGTGCACAATGCCTTTTGGGACCATCTTAAAGAGCAACTATCAGC
AACTCCCCCTGACTTCAGCTGTGCTCTTGAACTTCTGAAAGAAATTAAAGAGATCTTGATATCA
CTGCTATTACCACGCCAGAACCGCCTGAGAATTGAGATTGAAGAAGCTCTGGACATGGACTTGC
TCAAGCAGGAGGCAGAACATGGGGCCCTGAAAGTCCTCTATCTCTCTAAGTACGTTCTCAACAT
GATGGCTTTGCTGTGTGCACCAGTTCGAGATGAAGCAGTGCAGAAACTAGAAAACATTACGGAT
CCTGTTTGGCTACTGAGAGGGATCTTCCAGGTTCTGGGCCGGATGAAAATGGACATGGTGAACT
ACACTATCCAGAGCCTCCAACCCCACCTGCAGGAACATTCCATTCAGTATGAACGGGCTAAATT
CCAGGAACTCCTCAATAAGCAGCCTAGTCTCCTTAATCACACCACCAAATGGCTGACCCAAGCA
GCAGCAGACCTCACCATGTCACCTCCGACTTGCCCAGACACTTCTGACTCCTCCAGTGTGGCTG
GCCCCTCTCCCAATGAGGCAGCCAACAACCCAGAGCCCCTCAGCCCCACAATGGTGCTGTGTCA
GGGCTTCTTGAACCTCCTTCTCTGGGACCTTGAAAATGAAGAGTTCCCTGAGACCCTGCTGATG
GACAGAACCCGGCTGCAGGAGCTGAAGTCCCAGTTGCACCAGTTAACCGTCATGGCCTCAGTCT
TGCTGGTGGCCAGTAGTTTCTCTGGCAGTGTTTTGTTTGGCTCACCCCAATTTGTAGATAAACT
GAAACGCATAACCAAATCCTTGTTGGAAGACTTTCACTCCAGGCCTGAGGAAGCTATACTGACT
GTGAGTGAACAGGTATCTCAGGAAATCCATCAAAGCCTCAAGAATATGGGCCTTGTTGCTCTAA
GCAGTGATAATACAGCATCTCTAATGGGACAGCTCCAGAACATTGCCAAGAAGGAGAACTGTGT
CCGCAGTGTTATTGATCAGCGGATCCATTTGTTTCTCAAATGCTGTTTGGTTCTTGGTGTGCAG
CGGTCTCTATTAGACCTTCCTGGAGGCCTTACTCTCATTGAAGCAGAACTGGCAGAACTGGGCC
AAAAGTTTGTCAACTTGACACAACACAATCAGCAGGTGTTTGGTCCCTACTACACTGAGATCCT
AAAAACCCTCATTTCCCCAGCCCAGGCACTGGAAACAAAAGTGGAGTCTGTTTGATAGCGTCGG
CTCAGAGCCCTGGTACCTTGGACCCAAGAGGAGGCCCATCATCTTCCTGGAGTAACATCACCAG
TGACCAGCAGACAGTGAGCTTCTATCCCAGGCCCTGCAGCCAGTACACCAAGGCTGTAGGGATC
AAGCATGTAAACACCAACTGGTCCATACCCATTCATTAATAAACTTCTTAAGTGCAAGAA

hide sequence

RefSeq Acc Id:

XM_055113493 ⟹ XP_054969468

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	49,586,447 - 49,609,162 (-)	NCBI
NHGRI_mPanPan1	6	45,453,918 - 45,476,628 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003808580	(Get FASTA)	NCBI Sequence Viewer
	XP_008958847	(Get FASTA)	NCBI Sequence Viewer
	XP_054969468	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000025937.1
	ENSPPAP00000025939.1

RefSeq Acc Id:

XP_003808580 ⟸ XM_003808532

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPDVKESVPPKYPGDSEGGSCKPETSGLPQEDKSGSEDPPPFLSVTGLTETVNEVSKLSNKIGM
NCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILISLLLPR
QNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLL
RGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAADLT
MSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRTRL
QELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQV
SQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVRSVIDQRIHLFLKCCLVLGVQRSLLD
LPGGLTLIEAELAELGQKFVNLTQHNQQVFGPYYTEILKTLISPAQALETKVESV

hide sequence

RefSeq Acc Id:

XP_008958847 ⟸ XM_008960599

- Peptide Label:

isoform X2

- Sequence:

show sequence

MPDVKESVPPKYPGDSEGGSCKPETSGLPQEDKSGSEDPPPCLTETVNEVSKLSNKIGMNCDYY
MEEKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILISLLLPRQNRLR
IEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQ
VLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAADLTMSPPT
CPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRTRLQELKS
QLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIH
QSLKNMGLVALSSDNTASLMGQLQNIAKKENCVRSVIDQRIHLFLKCCLVLGVQRSLLDLPGGL
TLIEAELAELGQKFVNLTQHNQQVFGPYYTEILKTLISPAQALETKVESV

hide sequence

RefSeq Acc Id:

ENSPPAP00000025937 ⟸ ENSPPAT00000048768

RefSeq Acc Id:

ENSPPAP00000025939 ⟸ ENSPPAT00000048770

RefSeq Acc Id:	XP_054969468 ⟸ XM_055113493
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9BA16 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000036085	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000048768.1	UniProtKB/TrEMBL
	ENSPPAT00000048770.1	UniProtKB/TrEMBL
InterPro	Tcp11	UniProtKB/TrEMBL
NCBI Gene	TCP11	ENTREZGENE
PANTHER	PTHR12832	UniProtKB/TrEMBL
	T-COMPLEX PROTEIN 11 HOMOLOG	UniProtKB/TrEMBL
Pfam	Tcp11	UniProtKB/TrEMBL
UniProt	A0A2R9B8L6_PANPA	UniProtKB/TrEMBL
	A0A2R9BA16	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar