Tcp11 (t-complex protein 11) - Rat Genome Database

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Gene: Tcp11 (t-complex protein 11) Mus musculus
Analyze
Symbol: Tcp11
Name: t-complex protein 11
RGD ID: 1551188
MGI Page MGI
Description: Involved in several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; protein kinase A signaling; and regulation of sperm capacitation. Located in acrosomal vesicle and sperm midpiece. Is expressed in testis. Orthologous to human TCP11 (t-complex 11).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: D17Ken; D17Ken1; MGC107229; Tcp-1; Tcp-11; testis-specific protein PBS13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm7430  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,285,725 - 28,299,583 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,285,719 - 28,299,613 (-)EnsemblGRCm39 Ensembl
GRCm381728,066,747 - 28,080,726 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,066,745 - 28,080,639 (-)EnsemblGRCm38mm10GRCm38
MGSCv371728,203,692 - 28,217,584 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361727,794,340 - 27,808,154 (-)NCBIMGSCv36mm8
Celera1728,620,099 - 28,633,940 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
acrosomal vesicle  (IBA,IDA,ISO)
membrane  (IEA)
sperm flagellum  (IBA,IDA,ISO)
sperm midpiece  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The modulation of sperm function by fertilization promoting peptide. Fraser LR Hum Reprod 1998 Dec;13 Suppl 4:1-10.
2. TCP-11, the product of a mouse t-complex gene, plays a role in stimulation of capacitation and inhibition of the spontaneous acrosome reaction. Fraser LR, etal., Mol Reprod Dev 1997 Nov;48(3):375-82.
3. A 7.5 Mb sequence-ready PAC contig and gene expression map of human chromosome 11p13-p14.1. Gawin B, etal., Genome Res 1999 Nov;9(11):1074-86.
4. The mouse t-complex gene, Tcp-11, is under translational control. Hosseini R, etal., Mech Dev 1994 Jul;47(1):73-80.
5. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
6. Isolation and characterisation of a testis-expressed developmentally regulated gene from the distal inversion of the mouse t-complex. Mazarakis ND, etal., Development 1991 Feb;111(2):561-71.
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9820206   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17032746   PMID:18799693   PMID:21677750   PMID:21873635  
PMID:23892084   PMID:27105888   PMID:30973865   PMID:31837139   PMID:38355793  


Genomics

Comparative Map Data
Tcp11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,285,725 - 28,299,583 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,285,719 - 28,299,613 (-)EnsemblGRCm39 Ensembl
GRCm381728,066,747 - 28,080,726 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,066,745 - 28,080,639 (-)EnsemblGRCm38mm10GRCm38
MGSCv371728,203,692 - 28,217,584 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361727,794,340 - 27,808,154 (-)NCBIMGSCv36mm8
Celera1728,620,099 - 28,633,940 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.62NCBI
TCP11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38635,118,075 - 35,141,339 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl635,118,071 - 35,148,610 (-)EnsemblGRCh38hg38GRCh38
GRCh37635,085,852 - 35,109,116 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36635,193,827 - 35,217,165 (-)NCBINCBI36Build 36hg18NCBI36
Build 34635,193,826 - 35,217,104NCBI
Celera636,640,276 - 36,663,005 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef634,807,960 - 34,830,685 (-)NCBIHuRef
CHM1_1635,087,790 - 35,110,958 (-)NCBICHM1_1
T2T-CHM13v2.0634,940,885 - 34,963,547 (-)NCBIT2T-CHM13v2.0
Tcp11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,128,001 - 6,140,152 (-)NCBIGRCr8
mRatBN7.2206,126,267 - 6,138,408 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl206,126,269 - 6,136,055 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx206,839,113 - 6,848,608 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,200,930 - 6,210,424 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,680,427 - 6,689,847 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,645,619 - 7,657,222 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,645,626 - 7,654,428 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0209,848,944 - 9,861,154 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,283,357 - 6,293,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1206,283,585 - 6,293,639 (-)NCBI
Celera207,686,143 - 7,695,379 (-)NCBICelera
Cytogenetic Map20p12NCBI
Tcp11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554373,088,915 - 3,188,885 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554373,087,733 - 3,113,771 (-)NCBIChiLan1.0ChiLan1.0
TCP11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2549,586,447 - 49,617,332 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1645,453,918 - 45,484,796 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0634,680,570 - 34,703,230 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1635,776,683 - 35,799,480 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl635,776,684 - 35,799,480 (-)Ensemblpanpan1.1panPan2
TCP11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,286,863 - 4,306,152 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,286,876 - 4,306,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,302,127 - 4,321,690 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,623,940 - 4,643,518 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,623,953 - 4,643,560 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,282,985 - 4,302,538 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,364,243 - 4,383,786 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,464,145 - 4,483,708 (-)NCBIUU_Cfam_GSD_1.0
Tcp11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494639,879,524 - 39,896,634 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647624,063,854 - 24,080,729 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647624,063,854 - 24,080,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCP11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl731,007,474 - 31,114,734 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1731,007,460 - 31,161,082 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2735,783,078 - 35,807,520 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCP11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11736,865,236 - 37,008,100 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1737,003,819 - 37,009,908 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604435,028,215 - 35,051,154 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcp11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475422,264,830 - 22,282,795 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475422,258,418 - 22,284,562 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tcp11
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1187
Count of miRNA genes:436
Interacting mature miRNAs:499
Transcripts:ENSMUST00000042692, ENSMUST00000043925, ENSMUST00000114836, ENSMUST00000123628, ENSMUST00000129046, ENSMUST00000141806
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
12904013Cfq12_mconditioned fear QTL 12 (mouse)172682878130664955Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
12903990Opfaq5_mopen field activity QTL 5 (mouse)172595092528992098Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001085555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY098447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X52127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X52128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000042692   ⟹   ENSMUSP00000038590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,719 - 28,299,561 (-)Ensembl
GRCm38.p6 Ensembl1728,066,745 - 28,080,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000043925   ⟹   ENSMUSP00000046002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,725 - 28,299,613 (-)Ensembl
GRCm38.p6 Ensembl1728,066,751 - 28,080,639 (-)Ensembl
Ensembl Acc Id: ENSMUST00000114836   ⟹   ENSMUSP00000110485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,719 - 28,299,561 (-)Ensembl
GRCm38.p6 Ensembl1728,066,745 - 28,080,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000123628
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,771 - 28,287,450 (-)Ensembl
GRCm38.p6 Ensembl1728,066,797 - 28,068,476 (-)Ensembl
Ensembl Acc Id: ENSMUST00000129046   ⟹   ENSMUSP00000116959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,721 - 28,299,577 (-)Ensembl
GRCm38.p6 Ensembl1728,066,747 - 28,080,603 (-)Ensembl
Ensembl Acc Id: ENSMUST00000232728   ⟹   ENSMUSP00000156714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,725 - 28,298,720 (-)Ensembl
GRCm38.p6 Ensembl1728,066,751 - 28,079,746 (-)Ensembl
Ensembl Acc Id: ENSMUST00000232798   ⟹   ENSMUSP00000156874
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,725 - 28,298,758 (-)Ensembl
GRCm38.p6 Ensembl1728,066,751 - 28,079,784 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233009   ⟹   ENSMUSP00000156820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,725 - 28,298,988 (-)Ensembl
GRCm38.p6 Ensembl1728,066,751 - 28,080,014 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,725 - 28,287,765 (-)Ensembl
GRCm38.p6 Ensembl1728,066,751 - 28,068,791 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,725 - 28,297,479 (-)Ensembl
GRCm38.p6 Ensembl1728,066,751 - 28,078,505 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233615   ⟹   ENSMUSP00000156943
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,725 - 28,298,902 (-)Ensembl
GRCm38.p6 Ensembl1728,066,751 - 28,079,928 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233665   ⟹   ENSMUSP00000156460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,725 - 28,289,533 (-)Ensembl
GRCm38.p6 Ensembl1728,066,751 - 28,070,559 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,299,254 - 28,299,497 (-)Ensembl
GRCm38.p6 Ensembl1728,080,280 - 28,080,523 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233898   ⟹   ENSMUSP00000156512
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,725 - 28,298,738 (-)Ensembl
GRCm38.p6 Ensembl1728,066,751 - 28,079,764 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,285,725 - 28,293,795 (-)Ensembl
GRCm38.p6 Ensembl1728,066,751 - 28,074,821 (-)Ensembl
RefSeq Acc Id: NM_001085555   ⟹   NP_001079024
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,299,583 (-)NCBI
GRCm381728,066,747 - 28,080,639 (-)NCBI
MGSCv371728,203,692 - 28,217,584 (-)RGD
Celera1728,620,099 - 28,633,940 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357681   ⟹   NP_001344610
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,299,583 (-)NCBI
GRCm381728,066,747 - 28,080,584 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001374620   ⟹   NP_001361549
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,298,738 (-)NCBI
GRCm381728,066,751 - 28,079,764 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001374621   ⟹   NP_001361550
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,298,738 (-)NCBI
GRCm381728,066,751 - 28,079,764 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001399994   ⟹   NP_001386923
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,299,583 (-)NCBI
RefSeq Acc Id: NM_001399995   ⟹   NP_001386924
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,299,285 (-)NCBI
RefSeq Acc Id: NM_001399996   ⟹   NP_001386925
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,299,583 (-)NCBI
RefSeq Acc Id: NM_001399998   ⟹   NP_001386927
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,299,285 (-)NCBI
RefSeq Acc Id: NM_001399999   ⟹   NP_001386928
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,298,738 (-)NCBI
RefSeq Acc Id: NM_001400000   ⟹   NP_001386929
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,298,738 (-)NCBI
RefSeq Acc Id: NM_013687   ⟹   NP_038715
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,285,725 - 28,299,583 (-)NCBI
GRCm381728,066,747 - 28,080,584 (-)NCBI
MGSCv371728,203,692 - 28,217,584 (-)RGD
Celera1728,620,099 - 28,633,940 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_038715   ⟸   NM_013687
- Peptide Label: isoform 1
- UniProtKB: Q01755 (UniProtKB/Swiss-Prot),   B2KF25 (UniProtKB/TrEMBL),   B2KF24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001079024   ⟸   NM_001085555
- Peptide Label: isoform 2
- UniProtKB: Q5FWA2 (UniProtKB/TrEMBL),   Q01756 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344610   ⟸   NM_001357681
- Peptide Label: isoform 2
- UniProtKB: Q5FWA2 (UniProtKB/TrEMBL),   Q01756 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001361549   ⟸   NM_001374620
- Peptide Label: isoform 3
- UniProtKB: A0A3B2W7H0 (UniProtKB/TrEMBL),   Q01756 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001361550   ⟸   NM_001374621
- Peptide Label: isoform 4
- UniProtKB: A0A3B2WD68 (UniProtKB/TrEMBL),   Q01756 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000156460   ⟸   ENSMUST00000233665
Ensembl Acc Id: ENSMUSP00000156943   ⟸   ENSMUST00000233615
Ensembl Acc Id: ENSMUSP00000156820   ⟸   ENSMUST00000233009
Ensembl Acc Id: ENSMUSP00000038590   ⟸   ENSMUST00000042692
Ensembl Acc Id: ENSMUSP00000156512   ⟸   ENSMUST00000233898
Ensembl Acc Id: ENSMUSP00000116959   ⟸   ENSMUST00000129046
Ensembl Acc Id: ENSMUSP00000110485   ⟸   ENSMUST00000114836
Ensembl Acc Id: ENSMUSP00000156714   ⟸   ENSMUST00000232728
Ensembl Acc Id: ENSMUSP00000156874   ⟸   ENSMUST00000232798
Ensembl Acc Id: ENSMUSP00000046002   ⟸   ENSMUST00000043925
RefSeq Acc Id: NP_001386925   ⟸   NM_001399996
- Peptide Label: isoform 2
- UniProtKB: Q5FWA2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386923   ⟸   NM_001399994
- Peptide Label: isoform 1
- UniProtKB: B2KF25 (UniProtKB/TrEMBL),   B2KF24 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386927   ⟸   NM_001399998
- Peptide Label: isoform 2
- UniProtKB: Q5FWA2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386924   ⟸   NM_001399995
- Peptide Label: isoform 1
- UniProtKB: B2KF25 (UniProtKB/TrEMBL),   B2KF24 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386928   ⟸   NM_001399999
- Peptide Label: isoform 4
- UniProtKB: A0A3B2WD68 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386929   ⟸   NM_001400000
- Peptide Label: isoform 5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q01755-F1-model_v2 AlphaFold Q01755 1-566 view protein structure

Promoters
RGD ID:13675324
Promoter ID:EPDNEW_M21810
Type:multiple initiation site
Name:Tcp11_2
Description:Mus musculus t-complex protein 11 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21811  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381728,080,311 - 28,080,371EPDNEW
RGD ID:13675322
Promoter ID:EPDNEW_M21811
Type:initiation region
Name:Tcp11_1
Description:Mus musculus t-complex protein 11 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21810  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381728,080,584 - 28,080,644EPDNEW
RGD ID:6828767
Promoter ID:MM_KWN:22833
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Kidney
Transcripts:OTTMUST00000059234
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361728,205,091 - 28,206,382 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98544 AgrOrtholog
Ensembl Genes ENSMUSG00000062859 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000042692 ENTREZGENE
  ENSMUST00000042692.13 UniProtKB/TrEMBL
  ENSMUST00000043925 ENTREZGENE
  ENSMUST00000043925.16 UniProtKB/TrEMBL
  ENSMUST00000114836 ENTREZGENE
  ENSMUST00000114836.9 UniProtKB/TrEMBL
  ENSMUST00000129046.9 UniProtKB/TrEMBL
  ENSMUST00000232728.2 UniProtKB/TrEMBL
  ENSMUST00000232798 ENTREZGENE
  ENSMUST00000232798.2 UniProtKB/TrEMBL
  ENSMUST00000233009.2 UniProtKB/TrEMBL
  ENSMUST00000233615.2 UniProtKB/TrEMBL
  ENSMUST00000233665.2 UniProtKB/TrEMBL
  ENSMUST00000233898 ENTREZGENE
  ENSMUST00000233898.2 UniProtKB/TrEMBL
  ENSMUST00000233961 ENTREZGENE
InterPro Tcp11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21463 UniProtKB/TrEMBL
MGD MGI:98544 ENTREZGENE
NCBI Gene 21463 ENTREZGENE
PANTHER PTHR12832 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T-COMPLEX PROTEIN 11 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tcp11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tcp11 PhenoGen
UniProt A0A3B2W7H0 ENTREZGENE, UniProtKB/TrEMBL
  A0A3B2W8A4_MOUSE UniProtKB/TrEMBL
  A0A3B2WAQ3_MOUSE UniProtKB/TrEMBL
  A0A3B2WCV7_MOUSE UniProtKB/TrEMBL
  A0A3B2WD36_MOUSE UniProtKB/TrEMBL
  A0A3B2WD68 ENTREZGENE, UniProtKB/TrEMBL
  B2KF24 ENTREZGENE, UniProtKB/TrEMBL
  B2KF25 ENTREZGENE
  Q01755 ENTREZGENE
  Q01756 ENTREZGENE
  Q5FWA2 ENTREZGENE, UniProtKB/TrEMBL
  Q9CVV7_MOUSE UniProtKB/TrEMBL
  TCP11_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B2KF25 UniProtKB/TrEMBL