USP47 (ubiquitin specific peptidase 47) - Rat Genome Database

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Gene: USP47 (ubiquitin specific peptidase 47) Pan paniscus
Analyze
Symbol: USP47
Name: ubiquitin specific peptidase 47
RGD ID: 11832156
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); cysteine-type peptidase activity (inferred); deubiquitinase activity (inferred); INVOLVED IN intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); negative regulation of cysteine-type endopeptidase activity (ortholog); negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 47
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2914,288,095 - 14,405,971 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11114,250,741 - 14,368,585 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01112,009,770 - 12,127,425 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11111,703,617 - 11,821,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1111,703,617 - 11,821,074 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
USP47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2914,288,095 - 14,405,971 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11114,250,741 - 14,368,585 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01112,009,770 - 12,127,425 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11111,703,617 - 11,821,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1111,703,617 - 11,821,074 (+)Ensemblpanpan1.1panPan2
USP47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381111,841,972 - 11,961,887 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1111,841,423 - 11,961,887 (+)EnsemblGRCh38hg38GRCh38
GRCh371111,863,519 - 11,983,434 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361111,819,546 - 11,937,448 (+)NCBINCBI36Build 36hg18NCBI36
Build 341111,820,140 - 11,934,691NCBI
Celera1111,987,161 - 12,106,131 (+)NCBICelera
Cytogenetic Map11p15.3NCBI
HuRef1111,538,966 - 11,656,900 (+)NCBIHuRef
CHM1_11111,862,028 - 11,979,798 (+)NCBICHM1_1
T2T-CHM13v2.01111,931,131 - 12,053,770 (+)NCBIT2T-CHM13v2.0
Usp47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397111,622,692 - 111,710,591 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7111,622,711 - 111,710,868 (+)EnsemblGRCm39 Ensembl
GRCm387112,023,476 - 112,111,386 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7112,023,504 - 112,111,661 (+)EnsemblGRCm38mm10GRCm38
MGSCv377119,167,020 - 119,254,894 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367111,814,687 - 111,902,561 (+)NCBIMGSCv36mm8
Celera7111,998,866 - 112,086,718 (+)NCBICelera
Cytogenetic Map7F1NCBI
cM Map758.74NCBI
Usp47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,586,758 - 175,669,904 (+)NCBIGRCr8
mRatBN7.21166,152,104 - 166,235,312 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1166,152,199 - 166,235,312 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1174,487,162 - 174,570,366 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,673,157 - 181,756,359 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01174,373,161 - 174,456,333 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01176,854,589 - 176,937,763 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1176,854,653 - 176,937,763 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01183,833,960 - 183,917,156 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41169,836,253 - 169,920,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11169,947,098 - 170,039,002 (+)NCBI
Celera1164,029,805 - 164,112,586 (+)NCBICelera
Cytogenetic Map1q33NCBI
Usp47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541427,357,602 - 27,462,731 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541427,357,602 - 27,462,481 (+)NCBIChiLan1.0ChiLan1.0
USP47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12134,917,664 - 35,027,969 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2134,911,269 - 35,026,790 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2134,474,475 - 34,592,291 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02135,785,967 - 35,904,085 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2135,785,915 - 35,903,530 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12135,047,648 - 35,165,601 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02135,225,495 - 35,343,446 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02135,512,018 - 35,629,856 (+)NCBIUU_Cfam_GSD_1.0
Usp47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494750,450,282 - 50,561,650 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365286,481,507 - 6,595,771 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365286,483,898 - 6,596,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl247,449,161 - 47,582,819 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1247,449,162 - 47,583,893 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2250,764,919 - 50,825,320 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1152,872,514 - 52,989,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl152,875,465 - 52,988,505 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038150,473,946 - 150,593,952 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247663,913,066 - 4,035,623 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247663,913,033 - 4,038,275 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000007969   ⟹   ENSPPAP00000001626
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1111,703,617 - 11,821,072 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000008015   ⟹   ENSPPAP00000001632
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1111,703,617 - 11,821,072 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000008037   ⟹   ENSPPAP00000001640
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1111,704,164 - 11,821,074 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000008110   ⟹   ENSPPAP00000001653
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1111,734,341 - 11,818,094 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000008186   ⟹   ENSPPAP00000001663
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1111,744,324 - 11,818,094 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000008210   ⟹   ENSPPAP00000001671
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1111,795,804 - 11,808,498 (+)Ensembl
RefSeq Acc Id: XM_003818168   ⟹   XP_003818216
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2914,288,519 - 14,405,971 (+)NCBI
NHGRI_mPanPan11114,251,504 - 14,368,585 (+)NCBI
Mhudiblu_PPA_v01112,009,770 - 12,127,425 (+)NCBI
PanPan1.11111,703,617 - 11,821,072 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008971425   ⟹   XP_008969673
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2914,288,829 - 14,405,971 (+)NCBI
NHGRI_mPanPan11114,251,470 - 14,368,585 (+)NCBI
Mhudiblu_PPA_v01112,010,330 - 12,127,425 (+)NCBI
PanPan1.11111,703,617 - 11,821,074 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008971426   ⟹   XP_008969674
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2914,288,095 - 14,405,971 (+)NCBI
NHGRI_mPanPan11114,250,741 - 14,368,585 (+)NCBI
Mhudiblu_PPA_v01112,010,307 - 12,127,425 (+)NCBI
PanPan1.11111,703,617 - 11,821,072 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034932153   ⟹   XP_034788044
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2914,320,810 - 14,405,971 (+)NCBI
NHGRI_mPanPan11114,283,386 - 14,368,585 (+)NCBI
Mhudiblu_PPA_v01112,042,261 - 12,127,425 (+)NCBI
RefSeq Acc Id: XP_008969674   ⟸   XM_008971426
- Peptide Label: isoform X2
- UniProtKB: A0A2R8Z9T6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003818216   ⟸   XM_003818168
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZDK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008969673   ⟸   XM_008971425
- Peptide Label: isoform X1
- UniProtKB: A0A2R8Z9H3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034788044   ⟸   XM_034932153
- Peptide Label: isoform X4
Ensembl Acc Id: ENSPPAP00000001626   ⟸   ENSPPAT00000007969
Ensembl Acc Id: ENSPPAP00000001671   ⟸   ENSPPAT00000008210
Ensembl Acc Id: ENSPPAP00000001640   ⟸   ENSPPAT00000008037
Ensembl Acc Id: ENSPPAP00000001632   ⟸   ENSPPAT00000008015
Ensembl Acc Id: ENSPPAP00000001653   ⟸   ENSPPAT00000008110
Ensembl Acc Id: ENSPPAP00000001663   ⟸   ENSPPAT00000008186
Protein Domains
USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000005387 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000007969.1 UniProtKB/TrEMBL
  ENSPPAT00000008015.1 UniProtKB/TrEMBL
  ENSPPAT00000008037.1 UniProtKB/TrEMBL
  ENSPPAT00000008110.1 UniProtKB/TrEMBL
  ENSPPAT00000008186.1 UniProtKB/TrEMBL
  ENSPPAT00000008210.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  USP47_C UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
KEGG Report pps:100992310 UniProtKB/TrEMBL
NCBI Gene USP47 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 47 UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
  USP47_C UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A2R8Z9H3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8Z9T6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZA20_PANPA UniProtKB/TrEMBL
  A0A2R8ZDK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZG96_PANPA UniProtKB/TrEMBL
  A0A2R8ZGA7_PANPA UniProtKB/TrEMBL