MRPL1 (mitochondrial ribosomal protein L1) - Rat Genome Database

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Gene: MRPL1 (mitochondrial ribosomal protein L1) Pan paniscus
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Symbol: MRPL1
Name: mitochondrial ribosomal protein L1
RGD ID: 11823493
Description: ENCODES a protein that exhibits RNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN large ribosomal subunit (inferred); mitochondrion (inferred); ribonucleoprotein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L1, mitochondrial; large ribosomal subunit protein uL1m
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2352,109,970 - 52,203,131 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1452,296,559 - 52,389,512 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0446,239,491 - 46,331,917 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1452,084,870 - 52,177,179 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl452,085,053 - 52,176,796 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MRPL1Bonobotranslation involved_inIEAInterPro:IPR005879150520179 InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MRPL1Bonobolarge ribosomal subunit part_ofIEAInterPro:IPR005879150520179 InterProGO_REF:0000002
MRPL1Bonobomitochondrion located_inIEAInterPro:IPR005879150520179 InterProGO_REF:0000002
MRPL1Bonobomitochondrion located_inIEAUniProtKB-SubCell:SL-0173150520179 UniProtGO_REF:0000044
MRPL1Bonobomitochondrion located_inIEAUniProtKB-KW:KW-0496150520179 UniProtGO_REF:0000043
MRPL1Bonoboribonucleoprotein complex part_ofIEAUniProtKB-KW:KW-0687150520179 UniProtGO_REF:0000043
MRPL1Bonoboribosome located_inIEAUniProtKB-KW:KW-0689150520179 UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MRPL1Bonoboprotein binding enablesISOUniProtKB:Q9HD269068941 PMID:25416956IntActPMID:25416956
MRPL1Bonoboprotein binding enablesISOUniProtKB:Q8N0X2-4|UniProtKB:Q8N1B49068941 PMID:32296183IntActPMID:32296183
MRPL1BonoboRNA binding enablesIEAInterPro:IPR005879150520179 InterProGO_REF:0000002
MRPL1Bonobostructural constituent of ribosome enablesIEAInterPro:IPR005879150520179 InterProGO_REF:0000002

PMID:22301074  



MRPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2352,109,970 - 52,203,131 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1452,296,559 - 52,389,512 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0446,239,491 - 46,331,917 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1452,084,870 - 52,177,179 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl452,085,053 - 52,176,796 (-)Ensemblpanpan1.1panPan2
MRPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38477,862,830 - 77,952,785 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl477,862,830 - 77,952,785 (+)EnsemblGRCh38hg38GRCh38
GRCh37478,783,984 - 78,873,939 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36479,002,829 - 79,092,968 (+)NCBINCBI36Build 36hg18NCBI36
Build 34479,141,079 - 79,231,116NCBI
Celera476,085,074 - 76,174,865 (+)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef474,535,751 - 74,625,006 (+)NCBIHuRef
CHM1_1478,760,602 - 78,850,723 (+)NCBICHM1_1
T2T-CHM13v2.0481,202,852 - 81,293,608 (+)NCBIT2T-CHM13v2.0
Mrpl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39596,357,357 - 96,414,586 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl596,357,352 - 96,414,586 (+)EnsemblGRCm39 Ensembl
GRCm38596,209,498 - 96,266,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl596,209,493 - 96,266,727 (+)EnsemblGRCm38mm10GRCm38
MGSCv37596,639,134 - 96,695,728 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36596,450,417 - 96,507,011 (+)NCBIMGSCv36mm8
Celera593,553,498 - 93,610,078 (+)NCBICelera
Cytogenetic Map5E3NCBI
cM Map547.29NCBI
Mrpl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81413,604,498 - 13,663,633 (-)NCBIGRCr8
mRatBN7.21413,300,522 - 13,359,654 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1413,300,522 - 13,359,721 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1413,267,793 - 13,327,734 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01414,567,648 - 14,627,589 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01413,284,132 - 13,344,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01414,951,507 - 15,008,136 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1414,951,495 - 15,008,150 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01414,893,399 - 14,944,235 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41414,813,544 - 14,872,680 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11414,813,544 - 14,873,482 (-)NCBI
Celera1413,347,923 - 13,406,905 (-)NCBICelera
Cytogenetic Map14p22NCBI
Mrpl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554332,353,844 - 2,437,743 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554332,327,830 - 2,436,198 (+)NCBIChiLan1.0ChiLan1.0
MRPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1322,307,485 - 2,457,587 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl322,363,454 - 2,496,034 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3239,434,637 - 39,583,984 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0322,333,281 - 2,484,071 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl322,333,332 - 2,523,023 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1322,332,231 - 2,472,209 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0322,280,434 - 2,419,871 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03237,752,366 - 37,892,634 (-)NCBIUU_Cfam_GSD_1.0
Mrpl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052859,878,695 - 9,958,409 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366761,553,406 - 1,627,659 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366761,549,018 - 1,628,548 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1873,305,444 - 73,423,524 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2877,608,437 - 77,656,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1726,352,441 - 26,444,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660374,707,259 - 4,799,626 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475713,090,942 - 13,178,380 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475713,090,942 - 13,178,545 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Ensembl Acc Id: ENSPPAT00000060143   ⟹   ENSPPAP00000037244
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl452,085,053 - 52,176,796 (-)Ensembl
RefSeq Acc Id: XM_003832281   ⟹   XP_003832329
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2352,109,970 - 52,203,131 (-)NCBI
NHGRI_mPanPan1452,296,559 - 52,389,512 (-)NCBI
Mhudiblu_PPA_v0446,239,491 - 46,331,917 (-)NCBI
PanPan1.1452,084,870 - 52,177,179 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008957674   ⟹   XP_008955922
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2352,109,970 - 52,202,015 (-)NCBI
NHGRI_mPanPan1452,296,559 - 52,388,609 (-)NCBI
Mhudiblu_PPA_v0446,239,491 - 46,331,540 (-)NCBI
PanPan1.1452,084,870 - 52,176,777 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055111375   ⟹   XP_054967350
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2352,109,970 - 52,198,127 (-)NCBI
NHGRI_mPanPan1452,296,559 - 52,384,720 (-)NCBI
Protein RefSeqs XP_003832329 (Get FASTA)   NCBI Sequence Viewer  
  XP_008955922 (Get FASTA)   NCBI Sequence Viewer  
  XP_054967350 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037244.1
RefSeq Acc Id: XP_003832329   ⟸   XM_003832281
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C628 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008955922   ⟸   XM_008957674
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSPPAP00000037244   ⟸   ENSPPAT00000060143
RefSeq Acc Id: XP_054967350   ⟸   XM_055111375
- Peptide Label: isoform X2



1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSPPAG00000041378 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060143.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.190.20 UniProtKB/TrEMBL
  3.40.50.790 UniProtKB/TrEMBL
InterPro Ribosomal_L1-like UniProtKB/TrEMBL
  Ribosomal_L1/biogenesis UniProtKB/TrEMBL
  Ribosomal_L1_3-a/b-sand UniProtKB/TrEMBL
  Ribosomal_L1_mit UniProtKB/TrEMBL
KEGG Report pps:100985997 UniProtKB/TrEMBL
NCBI Gene MRPL1 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL UniProtKB/TrEMBL
  54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Ribosomal_L1 UniProtKB/TrEMBL
Superfamily-SCOP SSF56808 UniProtKB/TrEMBL
UniProt A0A2R9C628 ENTREZGENE, UniProtKB/TrEMBL
1 to 15 of 15 rows