Mrpl1 (mitochondrial ribosomal protein L1) - Rat Genome Database

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Gene: Mrpl1 (mitochondrial ribosomal protein L1) Rattus norvegicus
Analyze
Symbol: Mrpl1
Name: mitochondrial ribosomal protein L1
RGD ID: 1306850
Description: Predicted to have RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to localize to cytosolic large ribosomal subunit. Orthologous to human MRPL1 (mitochondrial ribosomal protein L1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 39S ribosomal protein L1, mitochondrial; LOC100359687; LOC289491; LOW QUALITY PROTEIN: 39S ribosomal protein L1, mitochondrial; mitochondrial ribosomal protein L1-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21413,300,522 - 13,359,654 (-)NCBI
Rnor_6.0 Ensembl1414,951,495 - 15,008,150 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01414,951,507 - 15,008,136 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01414,893,399 - 14,944,235 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41414,813,544 - 14,872,680 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11414,813,544 - 14,873,482 (-)NCBI
Celera1413,347,923 - 13,406,905 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:18614015   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Mrpl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21413,300,522 - 13,359,654 (-)NCBI
Rnor_6.0 Ensembl1414,951,495 - 15,008,150 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01414,951,507 - 15,008,136 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01414,893,399 - 14,944,235 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41414,813,544 - 14,872,680 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11414,813,544 - 14,873,482 (-)NCBI
Celera1413,347,923 - 13,406,905 (-)NCBICelera
Cytogenetic Map14p22NCBI
MRPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl477,862,830 - 77,952,785 (+)EnsemblGRCh38hg38GRCh38
GRCh38477,862,680 - 77,952,790 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37478,783,984 - 78,873,939 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36479,002,829 - 79,092,968 (+)NCBINCBI36hg18NCBI36
Build 34479,141,079 - 79,231,116NCBI
Celera476,085,074 - 76,174,865 (+)NCBI
Cytogenetic Map4q21.1NCBI
HuRef474,535,751 - 74,625,006 (+)NCBIHuRef
CHM1_1478,760,602 - 78,850,723 (+)NCBICHM1_1
Mrpl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39596,357,357 - 96,414,586 (+)NCBIGRCm39mm39
GRCm39 Ensembl596,357,352 - 96,414,586 (+)Ensembl
GRCm38596,209,498 - 96,266,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl596,209,493 - 96,266,727 (+)EnsemblGRCm38mm10GRCm38
MGSCv37596,639,134 - 96,695,728 (+)NCBIGRCm37mm9NCBIm37
MGSCv36596,450,417 - 96,507,011 (+)NCBImm8
Celera593,553,498 - 93,610,078 (+)NCBICelera
Cytogenetic Map5E3NCBI
Mrpl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554332,353,844 - 2,437,743 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554332,327,830 - 2,436,198 (+)NCBIChiLan1.0ChiLan1.0
MRPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1452,084,870 - 52,177,179 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl452,085,053 - 52,176,796 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0446,239,491 - 46,331,917 (-)NCBIMhudiblu_PPA_v0panPan3
MRPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1322,307,485 - 2,457,587 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl322,363,454 - 2,496,034 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3239,434,637 - 39,583,984 (-)NCBI
ROS_Cfam_1.0322,333,281 - 2,484,071 (+)NCBI
UMICH_Zoey_3.1322,332,231 - 2,472,209 (+)NCBI
UNSW_CanFamBas_1.0322,280,434 - 2,419,871 (+)NCBI
UU_Cfam_GSD_1.03237,752,366 - 37,892,634 (-)NCBI
Mrpl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052859,878,695 - 9,958,409 (-)NCBI
SpeTri2.0NW_0049366761,549,018 - 1,628,548 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1873,305,444 - 73,423,524 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2877,608,437 - 77,656,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1726,352,441 - 26,444,150 (+)NCBI
Mrpl1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475713,090,942 - 13,178,545 (-)NCBI

Position Markers
RH142878  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01414,962,031 - 14,962,270NCBIRnor6.0
Rnor_6.0856,491,312 - 56,491,551NCBIRnor6.0
Rnor_5.01414,903,923 - 14,904,162UniSTSRnor5.0
Rnor_5.0855,073,981 - 55,074,220UniSTSRnor5.0
RGSC_v3.41414,824,067 - 14,824,306UniSTSRGSC3.4
Celera1413,358,445 - 13,358,684UniSTS
Cytogenetic Map14p22UniSTS
RH143703  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01415,008,179 - 15,008,848NCBIRnor6.0
Rnor_5.01414,949,656 - 14,950,325UniSTSRnor5.0
RGSC_v3.41414,872,723 - 14,873,392UniSTSRGSC3.4
Celera1413,406,948 - 13,407,617UniSTS
Cytogenetic Map14p22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14134403399Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14141333960Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14141333960Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14142766285Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14222782519230541Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14483323319909932Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14483323319909932Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14483323323004027Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14483323326466248Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14483323333040042Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14975643572854397Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin141053997755539977Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)141053997755539977Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)141072926861873323Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141268042430155192Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1412680424106641756Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141268061332593926Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:95
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000002834, ENSRNOT00000039083
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 3 1
Below cutoff 3 21 37 25 16 25 6 9 58 33 29 9 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002834   ⟹   ENSRNOP00000002834
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1414,951,602 - 15,008,119 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000039083   ⟹   ENSRNOP00000036682
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl856,411,911 - 56,502,069 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084617   ⟹   ENSRNOP00000069244
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1414,951,495 - 15,008,150 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085278   ⟹   ENSRNOP00000070016
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl856,451,240 - 56,501,979 (+)Ensembl
RefSeq Acc Id: NM_001105997   ⟹   NP_001099467
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21413,300,523 - 13,359,545 (-)NCBI
Rnor_6.01414,951,507 - 15,008,136 (-)NCBI
Rnor_5.01414,893,399 - 14,944,235 (-)NCBI
RGSC_v3.41414,813,544 - 14,872,680 (-)RGD
Celera1413,347,923 - 13,406,905 (-)RGD
Sequence:
RefSeq Acc Id: XM_039091670   ⟹   XP_038947598
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21413,300,522 - 13,342,710 (-)NCBI
RefSeq Acc Id: XM_039091671   ⟹   XP_038947599
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21413,300,522 - 13,359,539 (-)NCBI
RefSeq Acc Id: XM_039091672   ⟹   XP_038947600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21413,300,522 - 13,359,631 (-)NCBI
RefSeq Acc Id: XM_039091673   ⟹   XP_038947601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21413,335,647 - 13,359,654 (-)NCBI
RefSeq Acc Id: XR_005492905
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21413,300,686 - 13,359,654 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099467   ⟸   NM_001105997
- UniProtKB: B5DER4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069244   ⟸   ENSRNOT00000084617
RefSeq Acc Id: ENSRNOP00000002834   ⟸   ENSRNOT00000002834
RefSeq Acc Id: XP_038947600   ⟸   XM_039091672
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947599   ⟸   XM_039091671
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038947598   ⟸   XM_039091670
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947601   ⟸   XM_039091673
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000036682   ⟸   ENSRNOT00000039083
RefSeq Acc Id: ENSRNOP00000070016   ⟸   ENSRNOT00000085278

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699203
Promoter ID:EPDNEW_R9728
Type:multiple initiation site
Name:Mrpl1_1
Description:mitochondrial ribosomal protein L1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01415,008,138 - 15,008,198EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306850 AgrOrtholog
  RGD:2325044 AgrOrtholog
Ensembl Genes ENSRNOG00000002070 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000045785 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002834 UniProtKB/TrEMBL
  ENSRNOP00000036682 UniProtKB/TrEMBL
  ENSRNOP00000069244 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000070016 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002834 UniProtKB/TrEMBL
  ENSRNOT00000039083 UniProtKB/TrEMBL
  ENSRNOT00000084617 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000085278 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.790 UniProtKB/TrEMBL
InterPro Ribosomal_L1/biogenesis UniProtKB/TrEMBL
  Ribosomal_L1_3-a/b-sand UniProtKB/TrEMBL
  Ribosomal_L1_mit UniProtKB/TrEMBL
  Ribosomal_L1_SF UniProtKB/TrEMBL
KEGG Report rno:100359687 UniProtKB/TrEMBL
  rno:289491 UniProtKB/TrEMBL
NCBI Gene 289491 ENTREZGENE
Pfam Ribosomal_L1 UniProtKB/TrEMBL
PhenoGen Mrpl1 PhenoGen
Superfamily-SCOP Ribosomal_L1 UniProtKB/TrEMBL
TIGRFAMs RplA_mito UniProtKB/TrEMBL
UniProt A0A0G2JUV4_RAT UniProtKB/TrEMBL
  A0A0G2JWU3_RAT UniProtKB/TrEMBL
  B5DER4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFE9_RAT UniProtKB/TrEMBL
  F1M9A4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Mrpl1  mitochondrial ribosomal protein L1  LOC100359687  mitochondrial ribosomal protein L1-like  Data Merged 737654 PROVISIONAL
2010-05-20 LOC100359687  mitochondrial ribosomal protein L1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Mrpl1  mitochondrial ribosomal protein L1   Mrpl1_predicted  mitochondrial ribosomal protein L1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mrpl1_predicted  mitochondrial ribosomal protein L1 (predicted)      Symbol and Name status set to approved 70820 APPROVED