TMEM161A (transmembrane protein 161A)

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Gene: TMEM161A (transmembrane protein 161A) Pan paniscus

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Symbol:

TMEM161A

Name:

transmembrane protein 161A

RGD ID:

11780512

Description:

INVOLVED IN cellular response to oxidative stress (inferred); cellular response to UV (inferred); negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage (inferred); ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); progressive myoclonus epilepsy 8 (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	23,982,028 - 24,000,981 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	22,988,175 - 23,007,097 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	18,557,799 - 18,576,722 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	19,560,046 - 19,578,779 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,560,046 - 19,578,779 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ISO)

progressive myoclonus epilepsy 8 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to oxidative stress (IEA)

cellular response to UV (IEA)

negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage (IEA)

positive regulation of DNA repair (IEA)

response to retinoic acid (IEA)

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

TMEM161A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	23,982,028 - 24,000,981 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	22,988,175 - 23,007,097 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	18,557,799 - 18,576,722 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	19,560,046 - 19,578,779 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,560,046 - 19,578,779 (-)	Ensembl	panpan1.1		panPan2

TMEM161A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	19,119,169 - 19,138,478 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	19,119,169 - 19,138,513 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	19,229,978 - 19,249,287 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	19,091,430 - 19,110,267 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	19,135,267 - 19,154,101 (-)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	18,794,915 - 18,813,863 (-)	NCBI		HuRef
CHM1_1	19	19,230,139 - 19,249,025 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	19,255,708 - 19,275,014 (-)	NCBI		T2T-CHM13v2.0

Tmem161a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,624,979 - 70,636,331 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	70,625,006 - 70,636,331 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	70,172,329 - 70,183,681 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,172,356 - 70,183,681 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,696,310 - 72,707,562 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	73,101,398 - 73,112,652 (+)	NCBI		MGSCv36	mm8
Celera	8	72,727,873 - 72,739,551 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.15	NCBI

Tmem161a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	19,272,433 - 19,282,173 (-)	NCBI		GRCr8
mRatBN7.2	16	19,237,638 - 19,248,151 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	19,238,487 - 19,248,087 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	19,278,142 - 19,287,749 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,410,467 - 20,420,067 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,331,102 - 19,340,709 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,985,841 - 20,996,351 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,986,687 - 20,994,379 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,835,785 - 20,846,295 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,721,497 - 19,731,098 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	19,722,171 - 19,731,083 (-)	NCBI
Celera	16	19,427,132 - 19,436,733 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Tmem161a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,666,885 - 2,674,215 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,667,089 - 2,674,550 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM161A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	44,021,722 - 44,037,985 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	44,020,919 - 44,037,938 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	43,938,526 - 43,954,585 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	44,509,581 - 44,525,939 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	44,509,655 - 44,525,939 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	43,746,934 - 43,763,372 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	44,156,409 - 44,172,432 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	44,431,810 - 44,448,294 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem161a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	202,725,769 - 202,737,629 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	2,274,989 - 2,287,580 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	2,274,989 - 2,287,288 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM161A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	58,728,813 - 58,744,937 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	58,728,738 - 58,744,939 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMEM161A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	17,586,202 - 17,604,835 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	17,584,268 - 17,601,206 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	1,715,635 - 1,734,859 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem161a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	2,056,885 - 2,061,872 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	2,056,642 - 2,064,137 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003817730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034945113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063600047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000061350 ⟹ ENSPPAP00000038447

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	19,560,046 - 19,578,779 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000061361 ⟹ ENSPPAP00000038458

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	19,560,359 - 19,578,706 (-)	Ensembl

RefSeq Acc Id:

XM_003817730 ⟹ XP_003817778

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	23,982,028 - 24,000,957 (-)	NCBI
NHGRI_mPanPan1	19	22,988,175 - 23,007,097 (-)	NCBI
Mhudiblu_PPA_v0	19	18,557,799 - 18,576,721 (-)	NCBI
PanPan1.1	19	19,560,046 - 19,578,779 (-)	NCBI

Sequence:

show sequence

AATTGGTCGAGTTTCCGCAGAGTGCCCGGAGCCCTAGGCCGGTGGGTGAGTGCACCGCGTTCTC
GCACGCGTCATGGCGGTCCTCGGAGTACAGCTGGTGGTGACCCTGCTCACTGCCACCCTCATGC
ACAGGCTGGCGCCACACTGCTCCTTCGCGCGCTGGCTGCTCTGTAACGGCAGTTTGTTCCGATA
CAAGCACCCGTCTGAGGAGGAGCTTCGGGCCCTGGCGGGGAAGCCGAGGCCCAGAGGCAGGAAA
GAGCGGTGGGCCAATGGCCTTAGTGAGGAGAAGCCACTGTCTGTGCCCCGAGATGCCCCGTTCC
AGCTGGAGACCTGCCCCCTCACGACTGTGGATGCCCTGGTCCTGCGCTTCTTCCTGGAGTACCA
GTGGTTTGTGGACTTTGCTGTGTACTCGGGCGGCGTGTACCTCTTCACAGAGGCCTACTACTAC
ATGCTGGGACCAGCCAAGGAGACTAACATCGCTGTGTTCTGGTGCCTGCTCACGGTGACCTTCT
CCATCAAGATGTTCCTGACAGTGACACGGCTGTACTTCAGCGCCGAGGAGGGGGGTGAGCGCTC
TGTCTGCCTCACCTTTGCCTTCCTCTTCCTGCTGCTGGCCATGCTGGTGCAAGTGGTGCGGGAG
GAGACCCTCGAGCTGGGCCTGGAGCCTGGTCTGGCCAGCATGACCCAGAACTTAGAGCCACTTC
TGAAGAAGCAGGGCTGGGACTGGGCGCTTCCTGTGGCCAAGCTGGCTATCCGCGTGGGACTGGC
AGTGGTGGGCTCTGTGCTGGGTGCCTTCCTCACCTTCCCAGGCCTGCGGCTGGCCCAGACCCAC
CGGGACGCACTGACCATGTCGGAGGACAGACCCATGCTGCAGTTCCTCCTGCACACCAGCTTCC
TGTCTCCCCTGTTCATCCTGTGGCTCTGGACAAAGCCCATTGCACGGGACTTCCTGCACCAGCC
GCCGTTTGGGGAGACGCATTTCTCCCTGCTGTCCGATTCTGCCTTCGACTCTGGGCGCCTCTGG
TTGCTGGTGGTGCTGTGCCTGCTGCGGCTGGCGGTGACCCGGCCCCACCTGCAGGCCTACCTGT
GCCTGGCCAAGGCCCGGGTGGAGCAGCTGCGAAGGGAGGCTGGCCGCATCGAAGCCCGTGAAAT
CCAGCAGAGGGTGGTCCGAGTCTACTGCTATGTGACCGTGGTGAGCTTGCAGTACCTGACGCCG
CTCATCCTCACCCTCAACTGCACACTTCTGCTCAAGACGCTGGGAGGCTATTCCTGGGGCCTGG
GCCCAGCTCCTCTACTATCCCCCGACCCATCCTCAGCCAGCGCTGCCCCCATCGGCTCTGGGGG
GGACGAAGTCCAGCAGACTGCAGCGCGGATTGCCGGGGCCCTGGGCGGCCTGCTTACTCCCCTC
TTCCTCCGTGGCGTCCTGGCCTACCTCATCTGGTGGACGGCTGCCTGCCAGCTGCTCGCCAGCC
TTTTCGGCCTCTACTTCCACCAGCACTTGGCAGGCTCCTAGCTGCCTGCAGACCCTCCTGGGGC
CCTGAGGTCTGGTCCTGGGGCAGCGGGACACTAGCCTGCCCCCTCTGTTTGCGCCCCCGTGTCC
CCAGCTGCAAGGTGGGGCCGGACTCCCCGGCGTTCCCTTCACCGCAGTGCCTGACCCGCGGCCC
CCCTTGGACGCCGACTTTCTGCCTCAGAACTGTCTCTCCTGGGCCCAGCAGCATGAGGGTCCCG
AGGCCATTGTCTCCGAAGCGTATGTGCCAGGTTTGAGTGGCGAGGGTGATGCTGGCTGCTCTTC
TGAACAAATAAAGGAGCACGCCGATTTTTACAAA

hide sequence

RefSeq Acc Id:

XM_063600047 ⟹ XP_063456117

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	23,982,028 - 24,000,981 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003817778	(Get FASTA)	NCBI Sequence Viewer
	XP_063456117	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000038447
	ENSPPAP00000038447.1
	ENSPPAP00000038458.1

RefSeq Acc Id:	XP_003817778 ⟸ XM_003817730
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CJT1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVLGVQLVVTLLTATLMHRLAPHCSFARWLLCNGSLFRYKHPSEEELRALAGKPRPRGRKERW ANGLSEEKPLSVPRDAPFQLETCPLTTVDALVLRFFLEYQWFVDFAVYSGGVYLFTEAYYYMLG PAKETNIAVFWCLLTVTFSIKMFLTVTRLYFSAEEGGERSVCLTFAFLFLLLAMLVQVVREETL ELGLEPGLASMTQNLEPLLKKQGWDWALPVAKLAIRVGLAVVGSVLGAFLTFPGLRLAQTHRDA LTMSEDRPMLQFLLHTSFLSPLFILWLWTKPIARDFLHQPPFGETHFSLLSDSAFDSGRLWLLV VLCLLRLAVTRPHLQAYLCLAKARVEQLRREAGRIEAREIQQRVVRVYCYVTVVSLQYLTPLIL TLNCTLLLKTLGGYSWGLGPAPLLSPDPSSASAAPIGSGGDEVQQTAARIAGALGGLLTPLFLR GVLAYLIWWTAACQLLASLFGLYFHQHLAGS hide sequence

Ensembl Acc Id:

ENSPPAP00000038458 ⟸ ENSPPAT00000061361

Ensembl Acc Id:

ENSPPAP00000038447 ⟸ ENSPPAT00000061350

RefSeq Acc Id:	XP_063456117 ⟸ XM_063600047
- Peptide Label:	isoform X1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000041901	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000061350.1	UniProtKB/TrEMBL
	ENSPPAT00000061361.1	UniProtKB/TrEMBL
InterPro	Transmembrane_161A/B	UniProtKB/TrEMBL
KEGG Report	pps:100991739	UniProtKB/TrEMBL
NCBI Gene	TMEM161A	ENTREZGENE
PANTHER	PTHR13624	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 161A	UniProtKB/TrEMBL
Pfam	Tmemb_161AB	UniProtKB/TrEMBL
UniProt	A0A2R9CBV3_PANPA	UniProtKB/TrEMBL
	A0A2R9CJT1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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