Tmem161a (transmembrane protein 161A) - Rat Genome Database

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Gene: Tmem161a (transmembrane protein 161A) Mus musculus
Analyze
Symbol: Tmem161a
Name: transmembrane protein 161A
RGD ID: 1317045
MGI Page MGI
Description: Predicted to be involved in several processes, including cellular response to UV; regulation of cellular response to stress; and response to retinoic acid. Predicted to be located in membrane. Is expressed in heart ventricle. Orthologous to human TMEM161A (transmembrane protein 161A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI428876; BB161850; BC021367; MGC29210
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,624,979 - 70,636,331 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,625,006 - 70,636,331 (+)EnsemblGRCm39 Ensembl
GRCm38870,172,329 - 70,183,681 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,172,356 - 70,183,681 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,696,310 - 72,707,562 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,101,398 - 73,112,652 (+)NCBIMGSCv36mm8
Celera872,727,873 - 72,739,551 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15782199   PMID:15840001   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:21267068   PMID:23604909   PMID:28106071   PMID:32554809   PMID:37039821   PMID:37670024  


Genomics

Comparative Map Data
Tmem161a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,624,979 - 70,636,331 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,625,006 - 70,636,331 (+)EnsemblGRCm39 Ensembl
GRCm38870,172,329 - 70,183,681 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,172,356 - 70,183,681 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,696,310 - 72,707,562 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,101,398 - 73,112,652 (+)NCBIMGSCv36mm8
Celera872,727,873 - 72,739,551 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
TMEM161A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381919,119,169 - 19,138,478 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1919,119,169 - 19,138,513 (-)EnsemblGRCh38hg38GRCh38
GRCh371919,229,978 - 19,249,287 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361919,091,430 - 19,110,267 (-)NCBINCBI36Build 36hg18NCBI36
Celera1919,135,267 - 19,154,101 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1918,794,915 - 18,813,863 (-)NCBIHuRef
CHM1_11919,230,139 - 19,249,025 (-)NCBICHM1_1
T2T-CHM13v2.01919,255,708 - 19,275,014 (-)NCBIT2T-CHM13v2.0
Tmem161a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,272,433 - 19,282,173 (-)NCBIGRCr8
mRatBN7.21619,237,638 - 19,248,151 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,238,487 - 19,248,087 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,278,142 - 19,287,749 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,410,467 - 20,420,067 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,331,102 - 19,340,709 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,985,841 - 20,996,351 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,986,687 - 20,994,379 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,835,785 - 20,846,295 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,721,497 - 19,731,098 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,722,171 - 19,731,083 (-)NCBI
Celera1619,427,132 - 19,436,733 (-)NCBICelera
Cytogenetic Map16p14NCBI
Tmem161a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,666,885 - 2,674,215 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,667,089 - 2,674,550 (+)NCBIChiLan1.0ChiLan1.0
TMEM161A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22023,982,028 - 24,000,981 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11922,988,175 - 23,007,097 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,557,799 - 18,576,722 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,560,046 - 19,578,779 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,560,046 - 19,578,779 (-)Ensemblpanpan1.1panPan2
TMEM161A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,021,722 - 44,037,985 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,020,919 - 44,037,938 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2043,938,526 - 43,954,585 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,509,581 - 44,525,939 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,509,655 - 44,525,939 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,746,934 - 43,763,372 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,156,409 - 44,172,432 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,431,810 - 44,448,294 (+)NCBIUU_Cfam_GSD_1.0
Tmem161a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,725,769 - 202,737,629 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,274,989 - 2,287,580 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365962,274,989 - 2,287,288 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM161A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,728,813 - 58,744,937 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,728,738 - 58,744,939 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TMEM161A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,586,202 - 17,604,835 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl617,584,268 - 17,601,206 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660741,715,635 - 1,734,859 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem161a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249082,056,885 - 2,061,872 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249082,056,642 - 2,064,137 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmem161a
354 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4056
Count of miRNA genes:822
Interacting mature miRNAs:1090
Transcripts:ENSMUST00000002413, ENSMUST00000123923, ENSMUST00000125755, ENSMUST00000125906, ENSMUST00000126268, ENSMUST00000133084, ENSMUST00000133339, ENSMUST00000143543, ENSMUST00000147656, ENSMUST00000149105, ENSMUST00000182365, ENSMUST00000182715, ENSMUST00000182942, ENSMUST00000182980
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83250657271740637Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3250657271740637Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84474791478748059Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84819016882190288Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85050595884505958Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
11039503Ccc4_mcolitis susceptibility in the Collaborative Cross 4 (mouse)86517423778002730Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86872247983326976Mouse

Markers in Region
BB161850  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,183,441 - 70,183,576UniSTSGRCm38
MGSCv37872,707,340 - 72,707,475UniSTSGRCm37
Celera872,739,329 - 72,739,464UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8741.47UniSTS
RH125124  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,181,299 - 70,182,073UniSTSGRCm38
MGSCv37872,705,198 - 72,705,972UniSTSGRCm37
Celera872,737,187 - 72,737,961UniSTS
Cytogenetic Map8B3.3UniSTS
AI428876  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,182,642 - 70,182,738UniSTSGRCm38
MGSCv37872,706,541 - 72,706,637UniSTSGRCm37
Celera872,738,530 - 72,738,626UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8741.53UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001293797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001426658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001426659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001426660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001426661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_122028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF456501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000002413   ⟹   ENSMUSP00000002413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,625,055 - 70,636,331 (+)Ensembl
GRCm38.p6 Ensembl870,172,405 - 70,183,681 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,625,066 - 70,630,078 (+)Ensembl
GRCm38.p6 Ensembl870,172,416 - 70,177,428 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,625,006 - 70,633,580 (+)Ensembl
GRCm38.p6 Ensembl870,172,356 - 70,180,930 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125906   ⟹   ENSMUSP00000137791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,630,140 - 70,633,862 (+)Ensembl
GRCm38.p6 Ensembl870,177,490 - 70,181,212 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126268
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,629,495 - 70,630,211 (+)Ensembl
GRCm38.p6 Ensembl870,176,845 - 70,177,561 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,631,383 - 70,633,963 (+)Ensembl
GRCm38.p6 Ensembl870,178,733 - 70,181,313 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,625,066 - 70,629,805 (+)Ensembl
GRCm38.p6 Ensembl870,172,416 - 70,177,155 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143543
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,633,189 - 70,634,682 (+)Ensembl
GRCm38.p6 Ensembl870,180,539 - 70,182,032 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147656   ⟹   ENSMUSP00000138017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,625,063 - 70,635,525 (+)Ensembl
GRCm38.p6 Ensembl870,172,413 - 70,182,875 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149105   ⟹   ENSMUSP00000123084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,626,953 - 70,635,517 (+)Ensembl
GRCm38.p6 Ensembl870,174,303 - 70,182,867 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182365   ⟹   ENSMUSP00000138641
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,625,069 - 70,633,388 (+)Ensembl
GRCm38.p6 Ensembl870,172,419 - 70,180,738 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182715   ⟹   ENSMUSP00000138432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,625,055 - 70,636,317 (+)Ensembl
GRCm38.p6 Ensembl870,172,405 - 70,183,667 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,629,890 - 70,631,540 (+)Ensembl
GRCm38.p6 Ensembl870,177,240 - 70,178,890 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182980   ⟹   ENSMUSP00000138499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl870,625,058 - 70,635,500 (+)Ensembl
GRCm38.p6 Ensembl870,172,408 - 70,182,850 (+)Ensembl
RefSeq Acc Id: NM_001293797   ⟹   NP_001280726
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,625,055 - 70,636,331 (+)NCBI
GRCm38870,172,408 - 70,183,681 (+)NCBI
Celera872,727,870 - 72,739,569 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001426658   ⟹   NP_001413587
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,625,055 - 70,636,331 (+)NCBI
RefSeq Acc Id: NM_001426659   ⟹   NP_001413588
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,625,055 - 70,636,331 (+)NCBI
RefSeq Acc Id: NM_001426660   ⟹   NP_001413589
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,625,055 - 70,636,331 (+)NCBI
RefSeq Acc Id: NM_001426661   ⟹   NP_001413590
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,625,055 - 70,636,331 (+)NCBI
RefSeq Acc Id: NM_145597   ⟹   NP_663572
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,625,055 - 70,636,331 (+)NCBI
GRCm38870,172,408 - 70,183,681 (+)NCBI
MGSCv37872,696,310 - 72,707,562 (+)RGD
Celera872,727,870 - 72,739,569 (+)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_122028
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,625,055 - 70,636,331 (+)NCBI
GRCm38870,172,408 - 70,183,681 (+)NCBI
Celera872,727,870 - 72,739,569 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242296   ⟹   XP_011240598
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,624,979 - 70,635,520 (+)NCBI
GRCm38870,172,329 - 70,183,664 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_663572   ⟸   NM_145597
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8BSL1 (UniProtKB/Swiss-Prot),   Q8BNL7 (UniProtKB/Swiss-Prot),   Q8C2I8 (UniProtKB/Swiss-Prot),   Q8VCA6 (UniProtKB/Swiss-Prot),   F6UNW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240598   ⟸   XM_011242296
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001280726   ⟸   NM_001293797
- Peptide Label: isoform 2 precursor
- UniProtKB: Q8VCA6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137791   ⟸   ENSMUST00000125906
RefSeq Acc Id: ENSMUSP00000138432   ⟸   ENSMUST00000182715
RefSeq Acc Id: ENSMUSP00000138499   ⟸   ENSMUST00000182980
RefSeq Acc Id: ENSMUSP00000138017   ⟸   ENSMUST00000147656
RefSeq Acc Id: ENSMUSP00000123084   ⟸   ENSMUST00000149105
RefSeq Acc Id: ENSMUSP00000002413   ⟸   ENSMUST00000002413
RefSeq Acc Id: ENSMUSP00000138641   ⟸   ENSMUST00000182365
RefSeq Acc Id: NP_001413587   ⟸   NM_001426658
- Peptide Label: isoform 2 precursor
RefSeq Acc Id: NP_001413589   ⟸   NM_001426660
- Peptide Label: isoform 3 precursor
RefSeq Acc Id: NP_001413590   ⟸   NM_001426661
- Peptide Label: isoform 4 precursor
RefSeq Acc Id: NP_001413588   ⟸   NM_001426659
- Peptide Label: isoform 2 precursor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VCA6-F1-model_v2 AlphaFold Q8VCA6 1-480 view protein structure

Promoters
RGD ID:8667285
Promoter ID:EPDNEW_M11673
Type:multiple initiation site
Name:Tmem161a_1
Description:Mus musculus transmembrane protein 161A , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38870,172,405 - 70,172,465EPDNEW
RGD ID:6843814
Promoter ID:MM_KWN:54667
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000052728,   OTTMUST00000052731,   OTTMUST00000052735,   OTTMUST00000052736,   UC009LZD.1,   UC009LZE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,695,989 - 72,696,489 (+)MPROMDB
RGD ID:6843813
Promoter ID:MM_KWN:54668
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000052730
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,697,681 - 72,698,181 (+)MPROMDB
RGD ID:6843818
Promoter ID:MM_KWN:54669
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000052734
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,699,731 - 72,700,231 (+)MPROMDB
RGD ID:6843822
Promoter ID:MM_KWN:54670
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000052737
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,700,954 - 72,701,454 (+)MPROMDB
RGD ID:6843817
Promoter ID:MM_KWN:54671
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver
Transcripts:OTTMUST00000052733
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,702,401 - 72,702,901 (+)MPROMDB
RGD ID:6843816
Promoter ID:MM_KWN:54672
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000052732
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,704,646 - 72,705,146 (+)MPROMDB
RGD ID:6848350
Promoter ID:MM_ACW:47814
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:TMEM161A.LSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,705,081 - 72,706,122 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384577 AgrOrtholog
Ensembl Genes ENSMUSG00000002342 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000002413 ENTREZGENE
  ENSMUST00000002413.15 UniProtKB/Swiss-Prot
  ENSMUST00000125906.8 UniProtKB/TrEMBL
  ENSMUST00000147656.8 UniProtKB/TrEMBL
  ENSMUST00000149105.2 UniProtKB/TrEMBL
  ENSMUST00000182365.8 UniProtKB/TrEMBL
  ENSMUST00000182715.8 UniProtKB/TrEMBL
  ENSMUST00000182980 ENTREZGENE
  ENSMUST00000182980.8 UniProtKB/Swiss-Prot
InterPro Transmembrane_161A/B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:234371 UniProtKB/Swiss-Prot
MGD MGI:2384577 ENTREZGENE
NCBI Gene 234371 ENTREZGENE
PANTHER PTHR13624 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 161A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tmemb_161AB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem161a PhenoGen
UniProt F6UNW2 ENTREZGENE, UniProtKB/TrEMBL
  M0QWE7_MOUSE UniProtKB/TrEMBL
  M0QWV0_MOUSE UniProtKB/TrEMBL
  Q8BNL7 ENTREZGENE
  Q8BSL1 ENTREZGENE
  Q8C2I8 ENTREZGENE
  Q8VCA6 ENTREZGENE
  S4R1Z2_MOUSE UniProtKB/TrEMBL
  S4R2H0_MOUSE UniProtKB/TrEMBL
  T161A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BNL7 UniProtKB/Swiss-Prot
  Q8BSL1 UniProtKB/Swiss-Prot
  Q8C2I8 UniProtKB/Swiss-Prot