ARPC5L (actin related protein 2/3 complex subunit 5 like) - Rat Genome Database

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Gene: ARPC5L (actin related protein 2/3 complex subunit 5 like) Pan paniscus
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Symbol: ARPC5L
Name: actin related protein 2/3 complex subunit 5 like
RGD ID: 11767746
Description: ENCODES a protein that exhibits actin binding (inferred); INVOLVED IN Arp2/3 complex-mediated actin nucleation (inferred); regulation of actin filament polymerization (inferred); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin-related protein 2/3 complex subunit 5-like protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,480,948 - 14,489,327 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,483,292 - 14,491,669 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,989,650 - 95,998,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,505,769 - 124,515,396 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,505,769 - 124,515,396 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARPC5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,480,948 - 14,489,327 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,483,292 - 14,491,669 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,989,650 - 95,998,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,505,769 - 124,515,396 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,505,769 - 124,515,396 (+)Ensemblpanpan1.1panPan2
ARPC5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,862,130 - 124,877,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,862,130 - 124,877,733 (+)EnsemblGRCh38hg38GRCh38
GRCh379127,624,409 - 127,640,012 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,671,305 - 126,679,517 (+)NCBINCBI36Build 36hg18NCBI36
Build 349124,711,037 - 124,719,249NCBI
Celera998,279,433 - 98,287,649 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,243,876 - 97,252,092 (+)NCBIHuRef
CHM1_19127,780,255 - 127,788,468 (+)NCBICHM1_1
T2T-CHM13v2.09137,060,438 - 137,076,046 (+)NCBIT2T-CHM13v2.0
Arpc5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,895,283 - 38,905,889 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,895,360 - 38,905,889 (+)EnsemblGRCm39 Ensembl
GRCm38239,008,066 - 39,015,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl239,005,348 - 39,015,877 (+)EnsemblGRCm38mm10GRCm38
MGSCv37238,863,659 - 38,871,392 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,830,148 - 38,837,881 (+)NCBIMGSCv36mm8
Celera240,733,885 - 40,741,618 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Arpc5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,169,518 - 43,177,224 (+)NCBIGRCr8
mRatBN7.2322,758,710 - 22,767,520 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,262,374 - 45,264,366 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl322,759,876 - 22,767,538 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx326,228,380 - 26,236,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,813,364 - 34,820,987 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,626,072 - 32,633,695 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,301,455 - 23,309,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,301,455 - 23,309,072 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,523,281 - 28,530,903 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,798,930 - 18,801,987 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,687,517 - 18,698,957 (+)NCBI
Celera321,193,183 - 21,200,804 (+)NCBICelera
Cytogenetic Map3q12NCBI
Arpc5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,360,189 - 3,367,531 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,360,189 - 3,367,531 (-)NCBIChiLan1.0ChiLan1.0
ARPC5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,142,001 - 58,149,285 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,142,389 - 58,149,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,340,842 - 57,348,123 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,062,448 - 59,069,717 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,062,836 - 59,069,659 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,821,454 - 57,828,735 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,137,063 - 58,144,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,227,991 - 58,235,278 (-)NCBIUU_Cfam_GSD_1.0
Arpc5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,296,420 - 193,304,836 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,065,338 - 13,073,053 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,064,206 - 13,073,363 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPC5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,642,260 - 265,654,018 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,645,800 - 265,653,513 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,468,496 - 299,479,052 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARPC5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,268,223 - 13,284,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,268,025 - 13,283,515 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660792,823,995 - 2,832,582 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arpc5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,322,034 - 10,329,616 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,322,034 - 10,333,234 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000044102   ⟹   ENSPPAP00000021300
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9124,505,769 - 124,515,396 (+)Ensembl
RefSeq Acc Id: XM_055117614   ⟹   XP_054973589
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21114,480,948 - 14,489,327 (-)NCBI
NHGRI_mPanPan1914,483,292 - 14,491,669 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054973589 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000021300.1
Ensembl Acc Id: ENSPPAP00000021300   ⟸   ENSPPAT00000044102
RefSeq Acc Id: XP_054973589   ⟸   XM_055117614
- UniProtKB: A0A2R9AZL3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033849 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044102.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.190 UniProtKB/TrEMBL
InterPro ARPC5 UniProtKB/TrEMBL
  ARPC5_sf UniProtKB/TrEMBL
NCBI Gene ARPC5L ENTREZGENE
PANTHER PTHR12644 UniProtKB/TrEMBL
  PTHR12644:SF2 UniProtKB/TrEMBL
Pfam P16-Arc UniProtKB/TrEMBL
PIRSF p16-ARC UniProtKB/TrEMBL
Superfamily-SCOP SSF69103 UniProtKB/TrEMBL
UniProt A0A2R9AZL3 ENTREZGENE, UniProtKB/TrEMBL