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Gene: COL11A2 (collagen type XI alpha 2 chain) Pan paniscus

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Symbol:

COL11A2

Name:

collagen type XI alpha 2 chain

RGD ID:

11745321

Description:

ENCODES a protein that exhibits extracellular matrix structural constituent (inferred); extracellular matrix structural constituent conferring tensile strength (inferred); INVOLVED IN cartilage development (ortholog); chondrocyte differentiation (ortholog); collagen fibril organization (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); autosomal dominant nonsyndromic deafness 13 (ortholog); autosomal dominant nonsyndromic deafness 33 (ortholog); FOUND IN collagen trimer (inferred); collagen-containing extracellular matrix (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

collagen alpha-2(XI) chain

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	47,640,586 - 47,671,355 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	43,512,227 - 43,542,203 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	32,734,950 - 32,765,837 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	33,849,885 - 33,879,635 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	33,849,885 - 33,879,635 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 5 (ISO)

autosomal dominant nonsyndromic deafness 13 (ISO)

autosomal dominant nonsyndromic deafness 33 (ISO)

autosomal recessive nonsyndromic deafness 53 (ISO)

cartilage disease (ISO)

cleft palate (ISO)

congenital heart disease (ISO)

Congenital Limb Deformities (ISO)

connective tissue disease (ISO)

Craniofacial Abnormalities (ISO)

cystic lymphangioma (ISO)

Down syndrome (ISO)

Dwarfism (ISO)

fibrochondrogenesis (ISO)

fibrochondrogenesis 1 (ISO)

fibrochondrogenesis 2 (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

infantile hypophosphatasia (ISO)

intellectual disability (ISO)

Larsen-like syndrome B3GAT3 type (ISO)

Macrocephaly (ISO)

MHC class I deficiency (ISO)

nonsyndromic deafness (ISO)

Nonsyndromic Sensorineural Hearing Loss (ISO)

osteochondrodysplasia (ISO)

otospondylomegaepiphyseal dysplasia, autosomal dominant (ISO)

otospondylomegaepiphyseal dysplasia, autosomal recessive (ISO)

proteasome-associated autoinflammatory syndrome 1 (ISO)

sensorineural hearing loss (ISO)

Stickler syndrome (ISO)

Weissenbacher-Zweymuller syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cartilage development (ISO)

chondrocyte differentiation (IEA,ISO)

collagen fibril organization (IEA,ISO)

extracellular matrix organization (IEA)

osteoblast differentiation (ISO)

roof of mouth development (ISO)

sensory perception of sound (IEA,ISO)

skeletal system development (ISO)

skeletal system morphogenesis (IEA,ISO)

soft palate development (ISO)

tissue homeostasis (IEA,ISO)

Cellular Component

collagen trimer (IEA)

collagen-containing extracellular matrix (IEA)

cytoplasm (IEA)

endoplasmic reticulum lumen (IEA)

extracellular matrix (IEA)

extracellular region (IEA)

extracellular space (IEA)

Molecular Function

extracellular matrix structural constituent (IEA)

extracellular matrix structural constituent conferring tensile strength (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

syndecan signaling pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

COL11A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	47,640,586 - 47,671,355 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	43,512,227 - 43,542,203 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	32,734,950 - 32,765,837 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	33,849,885 - 33,879,635 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	33,849,885 - 33,879,635 (-)	Ensembl	panpan1.1		panPan2

COL11A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	33,162,694 - 33,193,519 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	33,162,681 - 33,192,499 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	33,130,471 - 33,161,296 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	33,238,447 - 33,268,223 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	33,238,446 - 33,268,223	NCBI
Celera	6	34,684,835 - 34,714,611 (-)	NCBI		Celera
Cytogenetic Map	6	p21.32	NCBI
HuRef	6	32,872,882 - 32,902,658 (-)	NCBI		HuRef
CHM1_1	6	33,132,343 - 33,162,118 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	32,984,047 - 33,014,927 (-)	NCBI		T2T-CHM13v2.0

Col11a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	34,257,462 - 34,285,659 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	34,258,411 - 34,285,659 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	34,038,919 - 34,066,684 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	34,039,437 - 34,066,685 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	34,176,382 - 34,203,187 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	33,649,891 - 33,676,696 (+)	NCBI		MGSCv36	mm8
Celera	17	36,785,570 - 36,812,404 (+)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	17.98	NCBI

Col11a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	4,788,829 - 4,818,492 (-)	NCBI		GRCr8
mRatBN7.2	20	4,786,932 - 4,816,598 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	4,786,929 - 4,815,985 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	5,538,850 - 5,567,338 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	4,900,602 - 4,929,090 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	5,381,825 - 5,410,188 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	3,829,324 - 3,859,022 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	3,830,164 - 3,859,018 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	5,908,541 - 5,938,415 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	4,924,452 - 4,953,310 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	6,387,407 - 6,415,975 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Col11a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	1,740,402 - 1,766,490 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	1,739,426 - 1,767,087 (-)	NCBI	ChiLan1.0	ChiLan1.0

COL11A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	2,626,829 - 2,656,680 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	2,627,828 - 2,655,814 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	2,707,991 - 2,737,297 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	2,957,578 - 2,986,887 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	2,958,209 - 2,986,569 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	2,625,789 - 2,654,790 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	2,707,183 - 2,736,164 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	2,781,723 - 2,811,021 (-)	NCBI		UU_Cfam_GSD_1.0

Col11a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	38,267,952 - 38,297,103 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	25,663,755 - 25,691,344 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	25,663,563 - 25,692,315 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COL11A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	25,204,491 - 25,234,888 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	25,204,496 - 25,234,880 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	29,768,749 - 29,799,129 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COL11A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	38,882,591 - 38,912,602 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	38,882,745 - 38,911,625 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	32,996,813 - 33,026,801 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Col11a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	23,614,570 - 23,639,591 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	23,614,486 - 23,640,489 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003808587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063605269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063605270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000014337 ⟹ ENSPPAP00000003105

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	6	33,849,885 - 33,879,635 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000014340 ⟹ ENSPPAP00000003108

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	6	33,849,885 - 33,879,620 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000014343 ⟹ ENSPPAP00000003111

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	6	33,850,870 - 33,879,407 (-)	Ensembl

RefSeq Acc Id:

XM_003808587 ⟹ XP_003808635

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	47,640,586 - 47,670,343 (-)	NCBI
NHGRI_mPanPan1	6	43,512,227 - 43,541,982 (-)	NCBI
Mhudiblu_PPA_v0	6	32,734,950 - 32,764,702 (-)	NCBI
PanPan1.1	6	33,849,885 - 33,879,620 (-)	NCBI

Sequence:

show sequence

GCCACCGAGGAGGGAGCAGTGCCGGGAGCCCCGACGGCGCCTTGCTGCATGGAGCTGGGCCGCT
GACAGCTGTCGCTGCCCGCAGCCTCTGACCTCCCTGGGACCCCGGCGTCTGAGGCTCATAGTCT
GCTCCCTGTCTTCTGTCAGCCTCAGGGCATCCAGCGTCTCAGGCCGACCTGGGTCCCTGGGACC
CGGCATTTCGGCTTCTCAGCCATGGAGCGGTGCAGCCGCTGCCATCGCCTCCTCCTCCTCCTCC
CTCTGGTGCTGGGGCTGAGCGCGGCCCCAGGCTGGGCAGGTGCACCTCCTGTGGATGTGCTCCG
GGCCCTGAGGTTCCCCTCCCTCCCTGATGGTGTCCGGAGAGCGAAAGGCATCTGTCCAGCTGAT
GTGGCCTACCGAGTGGCACGACCTGCCCAGCTCAGTGCACCCACTCGCCAGCTTTTCCCAGGAG
GATTTCCCAAAGATTTCTCTCTGCTGACTGTTGTCCGGACCCGCCCTGGTCTCCAAGCTCCCCT
CCTGACTCTCTACAGTGCCCAGGGTGTCCGACAGCTGGGCCTGGAGCTGGGCCGACCTGTCCGC
TTCCTGTATGAAGACCAGACTGGGCGGCCTCAACCTCCCTCTCAGCCAGTCTTCCGAGGCCTCA
GCCTAGCAGATGGCAAGTGGCACCGTGTGGCTGTGGCTGTGAAGGGCCAGTCTGTCACCCTCAT
TGTTGACTGCAAGAAGCGAGTCACCCGGCCTCTCCCCCGAAGTGCTCGTCCAGTATTGGACACC
CATGGAGTGATCATCTTTGGTGCCCGTATTCTGGATGAAGAAGTCTTTGAGGGTGATGTCCAGG
AGCTGGCCATTGTCCCAGGGGTCCAGGCAGCCTATGAATCATGTGAACAGAAGGAGCTGGAATG
CGAGGGGGGCCAGAGGGAAAGACCCCAAAACCAACAGCCTCACAGAGCCCAGAGATCTCCACAG
CAGCAACCATCAAGACTTCATAGGCCACAAAATCAGGAACCCCAGAGCCAGCCCACTGAGTCTC
TCTACTATGACTACGAGCCCCCCTATCATGATGTGATGTCTACGGGGACAACCCCTGATTATCA
GGACCCCACCCCAGGTGAAGAGGAAGAAATCCTGGAGTCGAGCCTCTTGCCACCCCTTGAGGAG
GAGCAGACAGATCTCCAGGTCCCCCCCACAGCCGACAGGTTCCGGGCAGAGGAATATGGGGAGG
GTGGCACAGACCCCCCTGAAGGGCCCTACGATTACACCTATGGCTATGGGGATGATTATCGTGA
GGAGACAGAGCTTGGCCCTGCCCTCTCTGCGGAGACAGCCCACTCAGGAGCCGCTGCCCATGGA
CCCCGAGGGCTGAAGGGAGAGAAAGGAGAGCCTGCAGTGTTGGAACCTGGTATGCTCGTGGAGG
GGCCCCCTGGCCCAGAAGGCCCTGCGGGATTGATTGGGCCCCCTGGCATCCAGGGGAACCCAGG
CCCAGTTGGAGACCCTGGAGAGAGGGGCCCCCCTGGCCGAGCAGGGCTCCCTGGATCAGATGGG
GCTCCTGGTCCTCCTGGCACATCTCTCATGCTCCCATTCCGGTTTGGCAGTGGTGGGGGTGACA
AGGGCCCTGTGGTGGCGGCCCAGGAGGCTCAGGCCCAGGCGATCCTGCAGCAGGCGAGGCTGGC
GCTCCGTGGACCCCCTGGCCCCATGGGATACACAGGGCGCCCTGGACCCTTGGGCCAACCTGGG
AGCCCTGGCCTGAAAGGAGAGTCTGGAGACTTAGGACCTCAGGGCCCCAGAGGACCTCAGGGCC
TCACAGGCCCTCCTGGCAAGGCTGGGCGAAGGGGCCGGGCAGGTGCTGATGGAGCCCGAGGGGT
GCCTGGAGAACCTGGAGTGAAGGGTGACCGAGGTTTTGATGGACTCCCAGGGCTCCCTGGAGAG
AAGGGCCATAGGGGTGATACTGGTGCCCAGGGCCTTCCTGGTCCCCCTGGTGAGGATGGAGAGA
GGGGAGATGACGGGGAGATTGGGCCTCGAGGGCTGCCTGGAGAGTCGGGACCTCGAGGTCTCCT
TGGCCCCAAAGGCCCACCTGGTATTCCTGGACCCCCTGGCGTCCGAGGCATGGATGGTCCCCAG
GGCCCCAAAGGGAGCTTGGGACCCCAGGGAGAGCCAGGACCTCCTGGACAACAGGGCACCCCTG
GGACCCAGGGTCTTCCCGGGCCCCAGGGTGCCATCGGCCCTCATGGAGAGAAGGGTCCTCAAGG
GAAGCCAGGGCTCCCCGGCATGCCTGGCTCAGACGGACCCCCGGGTCACCCAGGGAAGGAAGGT
CCCCCTGGAACCAAAGGAAACCAGGGTCCCTCTGGACCTCAGGGTCCTCTAGGATACCCAGGAC
CTCGAGGGGTCAAGGGTGTGGACGGAATTCGGGGTCTGAAGGGTCATAAGGGTGAGAAGGGTGA
GGATGGCTTTCCTGGGTTCAAAGGTGACATAGGCGTGAAAGGTGACAGGGGCGAAGTTGGAGTC
CCTGGTTCCAGGGGAGAGGATGGTCCTGAGGGGCCAAAGGGACGCACTGGACCGACTGGAGACC
CTGGGCCCCCAGGGCTCATGGGCGAGAAGGGCAAGCTGGGTGTTCCTGGTCTGCCTGGCTATCC
TGGACGTCAGGGACCCAAGGGGTCCCTAGGATTTCCTGGCTTTCCTGGTGCCAGTGGAGAGAAG
GGAGCCCGGGGCCTGTCGGGGAAGTCAGGGCCTCGGGGAGAACGGGGCCCCACGGGTCCACGGG
GTCAGCGGGGACCCCGAGGTGCCACTGGGAAGTCTGGAGCTAAGGGAACATCTGGTGGTGATGG
CCCCCATGGGCCCCCTGGAGAGAGGGGCCTCCCTGGACCTCAGGGTCCCAACGGGTTTCCTGGA
CCGAAAGGACCCCCGGGCCCCCCTGGGAAGGACGGGCTGCCGGGACACCCAGGCCAAAGAGGAG
AAGTGGGTTTCCAAGGGAAGACCGGCCCCCCTGGTCCTCCAGGAGTGGTGGGACCTCAGGGAGC
AGCAGGAGAAACCGGCCCTATGGGGGAGAGAGGTCACCCAGGCCCCCCGGGGCCCCCTGGAGAG
CAGGGACTACCTGGGACGGCTGGAAAAGAAGGAACAAAGGGTGACCCTGGTCCCCCTGGGGCCC
CAGGGAAGGATGGTCCTGCTGGTCTGAGGGGATTCCCAGGAGAGAGAGGCCTCCCAGGCACTGC
TGGTGGACCTGGTTTGAAGGGGAATGAAGGTCCTTCTGGCCCCCCTGGCCCTGCAGGCTCCCCT
GGGGAACGAGGTGCAGCAGGATCAGGGGGACCCATTGGTCCGCCAGGGCGCCCAGGCCCGCAGG
GTCCCCCTGGAGCAGCAGGAGAGAAAGGTGTCCCAGGTGAGAAGGGCCCCATTGGCCCGACTGG
CCGAGATGGAGTGCAGGGTCCTGTGGGGCTTCCTGGTCCTGCTGGGCCTCCAGGTGTGGCTGGA
GAGGATGGAGACAAGGGTGAGGTGGGGGACCCTGGACAGAAGGGCACCAAAGGGAACAAGGGTG
AACATGGCCCTCCTGGACCCCCTGGACCCATTGGTCCTGTGGGGCAGCCTGGAGCAGCGGGAGC
AGATGGGGAGCCCGGAGCTCGGGGACCCCAGGGACACTTTGGAGCCAAAGGTGATGAAGGAACA
AGAGGATTCAATGGGCCCCCAGGACCCATTGGCCTACAGGGTTTGCCAGGCCCCTCTGGGGAGA
AGGGAGAAACAGGAGATGTGGGTCCTATGGGACCACCTGGCCCCCCAGGACCTCGAGGTCCAGC
TGGACCCAATGGCGCTGATGGCCCACAAGGTCCCCCAGGAGGTGTTGGGAACCTGGGTCCCCCT
GGAGAGAAGGGGGAACCAGGAGAGTCAGGATCTCCAGGGATCCAGGGCGAGCCAGGTGTCAAGG
GTCCACGCGGGGAACGTGGAGAGAAAGGAGAGTCGGGGCAGCCAGGAGAGCCAGGACCACCAGG
GCCTAAAGGCCCCACAGGCGATGATGGCCCCAAAGGGAACCCTGGTCCTGTTGGTTTTCCTGGT
GACCCTGGCCCCCCTGGAGAAGGTGGCCCTCGGGGCCAGGATGGTGCTAAGGGTGACCGAGGCG
AGGATGGTGAGCCAGGACAGCCTGGATCCCCTGGTCCCACCGGGGAGAATGGACCCCCAGGGCC
ACTTGGAAAGCGAGGTCCTGCTGGCTCGCCTGGTCCCGAGGGGCGACAAGGAGGGAAGGGAGCC
AAGGGAGATCCTGGCGCTATAGGTGCCCCGGGGAAGACAGGCCCGGTGGGTCCTGCAGGCCCAG
CAGGGAAACCTGGCCCTGATGGTCTGAGGGGGCTCCCAGGCTCAGTGGGTCAGCAAGGCCGACC
TGGAGCTACAGGCCAGGCTGGGCCCCCAGGTCCTGTGGGACCCCCAGGGCTGCCTGGTCTCCGG
GGCGATGCTGGAGCCAAGGGAGAGAAGGGCCACCCAGGTCTCATTGGACTGATTGGGCCCCCGG
GTGAGCAGGGAGAGAAGGGAGATCGGGGACTTCCTGGGCCTCAGGGCTCCCCTGGGCAGAAGGG
TGAGATGGGTATCCCAGGAGCATCCGGCCCCATTGGTCCTGGAGGTGCCCCCGGCCTCCCCGGA
CCTGCTGGCCCCAAAGGAGCCAAAGGAGCCACAGGCCCAGGCGGACCCAAGGGAGAGAAGGGTG
TGCAGGGCCCTCCAGGACACCCGGGTCCCCCAGGCGAGGTGATCCAGCCACTGCCCATTCAGAT
GCCCAAGAAGACTCGGCGCTCGGTGGATGGAAGCCGTCTGATGCAGGAAGATGAGGCCATACCG
ACCGGGGGAGCCCCCGGCAGTCCTGGGGGGCTGGAGGAGATCTTTGGCTCACTCGACTCCCTGC
GGGAGGAGATCGAGCAGATGAGGCGGCCAACAGGGACCCAGGACAGCCCTGCTCGCACCTGCCA
GGACCTGAAGCTGTGCCACCCAGAGCTTCCCGATGGAGAGTACTGGGTCGACCCCAACCAGGGC
TGTGCTCGGGATGCCTTCCGAGTTTTCTGCAACTTCACAGCAGGGGGTGAGACCTGTGTGACGC
CTAGGGATGACGTCACGCAGTTCTCTTACGTGGACTCAGAGGGCTCCCCAGTGGGTGTGGTCCA
GCTCACCTTCCTGCGGCTGCTCAGCGTCTCAGCCCACCAGGACGTCTCCTACCCCTGCTCTGGA
GCAGCCCGTGACGGTCCCCTGAGACTCCGTGGGGCCAATGAGGATGAGCTGAGCCCGGAGACTA
GCCCCTATGTCAAAGAATTCAGAGATGGCTGCCAGACACAGCAAGGCCGGACGGTGCTGGAGGT
GCGAACGCCTGTGCTGGAGCAGCTGCCAGTGCTGGATGCCTCCTTCTCAGACCTGGGAGCCCCA
CCGAGGCGGGGAGGGGTGCTGCTGGGGCCTGTCTGCTTCATGGGATAGGACCGTCTCTGTCTGA
TCCTGTCCATCGGAACCAGGCCCACCTGGAATCCCACAACATCAGCTCTGTGCCACCTCCCAAG
AGGGCTCCTCACTATCTAGGGAGCCCTGGGCCAGGGCGTGGAGAGCCCTCAGTCAGGGGCAGGC
CACGGGAGGGGTGAAGTGGTTGCCTGGACACCCCACGGGAGGAGTGGCATCTGGGGCTCTTGGC
CCTCCCACCTGGAGCCTGTGACCCGTTAGAGAGCTGAGACCCTTATTTAAAACTCACCTCCCAA
TCACCCCAAACAAATGGAAGAGAAGAGAAAGGACATGGTGTATTTTGTATTTAAAAGTAATTAT
ATTAATTATTTAAAGTGTGGAAAGCAAAATAACAAAAAAGAGAAACGCCAACAAAAATCAGCAG
ATGTTGGAGACAGGGGTCTCAGGGGTGGGCTCCGGCACCCACATCCTGGAGTCAGGACTTTCCT
CAGTGACTGTGTGTAGGGGGGTTTGAGGGCTGAACCCCACCTCCCTCCCACCTTCCTCCCACCT
CACCTGTCGCACCCACTGTGAAAGTTGGAATATGTGGTCTCCCTGGCCTCAGGGCTCTGACTCT
GCCAGGGTGGGGCTCTCTAACCCACAGGTGTTGGCTGCCTGGCCCATGTGCCCACTGTCTCTTC
CACTTGGTCTGGGTTTGGCAGGCACTGCCTGCTACTTGAGGGCCAGGATGCTCCCCCAGGGAAG
AAACGGAATAGTGTGGGGTGTGTGCAGGGCTGCATCCCGCAGATGGCTGGAATATTAAAATTCT
TCTATATTGGCTGGTAAATTGCCATGGCCCTGAGCCACTGAGTATGTTCGTTGCCACCCCGTCC
CTCCCCTGGGCACCCCTCACTTTCCCTGATCCTGCAATTAAAGGGTTAATGTGTGGCATATGGA
AGGGACTCCCAGGACCCTGTGCCCAGCTTCCATGCTGACTGATGGTTAAATAATGTGATTGTCT
CCTCCCAGG

hide sequence

RefSeq Acc Id:

XM_055113461 ⟹ XP_054969436

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	47,640,586 - 47,670,560 (-)	NCBI
NHGRI_mPanPan1	6	43,512,227 - 43,542,203 (-)	NCBI

RefSeq Acc Id:

XM_055113462 ⟹ XP_054969437

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	47,640,586 - 47,668,492 (-)	NCBI
NHGRI_mPanPan1	6	43,512,227 - 43,540,134 (-)	NCBI

RefSeq Acc Id:

XM_055113463 ⟹ XP_054969438

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	47,640,586 - 47,670,343 (-)	NCBI
NHGRI_mPanPan1	6	43,512,227 - 43,541,982 (-)	NCBI

RefSeq Acc Id:

XM_063605269 ⟹ XP_063461339

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	47,640,586 - 47,671,355 (-)	NCBI

RefSeq Acc Id:

XM_063605270 ⟹ XP_063461340

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	47,640,586 - 47,671,139 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003808635	(Get FASTA)	NCBI Sequence Viewer
	XP_054969436	(Get FASTA)	NCBI Sequence Viewer
	XP_054969437	(Get FASTA)	NCBI Sequence Viewer
	XP_054969438	(Get FASTA)	NCBI Sequence Viewer
	XP_063461339	(Get FASTA)	NCBI Sequence Viewer
	XP_063461340	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000003105.1
	ENSPPAP00000003108.1
	ENSPPAP00000003111.1

RefSeq Acc Id:	XP_003808635 ⟸ XM_003808587
- Peptide Label:	isoform X5
- UniProtKB:	A0A2R8ZE20 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERCSRCHRLLLLLPLVLGLSAAPGWAGAPPVDVLRALRFPSLPDGVRRAKGICPADVAYRVAR PAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVRQLGLELGRPVRFLYEDQT GRPQPPSQPVFRGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTHGVIIFG ARILDEEVFEGDVQELAIVPGVQAAYESCEQKELECEGGQRERPQNQQPHRAQRSPQQQPSRLH RPQNQEPQSQPTESLYYDYEPPYHDVMSTGTTPDYQDPTPGEEEEILESSLLPPLEEEQTDLQV PPTADRFRAEEYGEGGTDPPEGPYDYTYGYGDDYREETELGPALSAETAHSGAAAHGPRGLKGE KGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGT SLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGE SGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGVPGEPGVKGDRGFDGLPGLPGEKGHRGDT GAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLG PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGN QGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGED GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSG KSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGP PGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTA GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAG SGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGE VGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPG ESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGE GGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGPEGRQGGKGAKGDPGAI GAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKG EKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGAPGLPGPAGPKGA KGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGS PGGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFR VFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGAARDGPL RLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVL LGPVCFMG hide sequence

Ensembl Acc Id:

ENSPPAP00000003108 ⟸ ENSPPAT00000014340

Ensembl Acc Id:

ENSPPAP00000003111 ⟸ ENSPPAT00000014343

Ensembl Acc Id:

ENSPPAP00000003105 ⟸ ENSPPAT00000014337

RefSeq Acc Id:	XP_054969436 ⟸ XM_055113461
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZDJ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054969438 ⟸ XM_055113463
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R8ZK54 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054969437 ⟸ XM_055113462
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZDJ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063461339 ⟸ XM_063605269
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063461340 ⟸ XM_063605270
- Peptide Label:	isoform X4

Protein Domains

Fibrillar collagen NC1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000013099	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000014337.1	UniProtKB/TrEMBL
	ENSPPAT00000014340.1	UniProtKB/TrEMBL
	ENSPPAT00000014343.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.1000	UniProtKB/TrEMBL
	2.60.120.200	UniProtKB/TrEMBL
InterPro	Collagen	UniProtKB/TrEMBL
	Collagen_superfamily	UniProtKB/TrEMBL
	ConA-like_dom_sf	UniProtKB/TrEMBL
	Fib_collagen_C	UniProtKB/TrEMBL
	Laminin_G	UniProtKB/TrEMBL
	TSPN-like_N	UniProtKB/TrEMBL
KEGG Report	pps:100992124	UniProtKB/TrEMBL
NCBI Gene	COL11A2	ENTREZGENE
PANTHER	COLLAGEN ALPHA	UniProtKB/TrEMBL
	COLLAGEN ALPHA-2(XI) CHAIN	UniProtKB/TrEMBL
Pfam	COLFI	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
	Laminin_G_2	UniProtKB/TrEMBL
PROSITE	NC1_FIB	UniProtKB/TrEMBL
SMART	COLFI	UniProtKB/TrEMBL
	LamG	UniProtKB/TrEMBL
	TSPN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49899	UniProtKB/TrEMBL
UniProt	A0A2R8ZDJ6	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZE20	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZK54	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIA

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - OMIA

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)