FSCN2 (fascin actin-bundling protein 2, retinal) - Rat Genome Database
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Gene: FSCN2 (fascin actin-bundling protein 2, retinal) Pan paniscus
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Symbol: FSCN2
Name: fascin actin-bundling protein 2, retinal
RGD ID: 11744023
Description: INVOLVED IN eye photoreceptor cell development (ortholog); ASSOCIATED WITH Leber congenital amaurosis (ortholog); macular degeneration (ortholog); retinitis pigmentosa (ortholog); FOUND IN actin cytoskeleton (ortholog); stereocilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: fascin homolog 2, actin-bundling protein, retinal; fascin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11781,687,051 - 81,694,823 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,687,051 - 81,694,823 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01775,974,971 - 75,993,275 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
FSCN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11781,687,051 - 81,694,823 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,687,051 - 81,694,823 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01775,974,971 - 75,993,275 (+)NCBIMhudiblu_PPA_v0panPan3
FSCN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1781,528,396 - 81,537,130 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1781,528,377 - 81,537,130 (+)EnsemblGRCh38hg38GRCh38
GRCh381781,513,019 - 81,537,130 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371779,481,022 - 79,504,156 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371779,495,403 - 79,504,156 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,110,012 - 77,114,632 (+)NCBINCBI36hg18NCBI36
Build 341777,110,016 - 77,114,631NCBI
Celera1776,139,079 - 76,148,244 (+)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1774,944,167 - 74,951,874 (+)NCBIHuRef
CHM1_11779,581,654 - 79,590,360 (+)NCBICHM1_1
Fscn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,250,991 - 120,258,999 (+)NCBIGRCm39mm39
GRCm3811120,360,165 - 120,368,173 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,361,534 - 120,368,168 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711120,222,848 - 120,229,487 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611120,177,624 - 120,184,261 (+)NCBImm8
Celera11132,096,284 - 132,102,924 (+)NCBICelera
Cytogenetic Map11E2NCBI
Fscn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210105,634,783 - 105,641,322 (+)NCBI
Rnor_6.0 Ensembl10109,533,487 - 109,540,026 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.010109,528,307 - 109,540,675 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010109,128,055 - 109,134,594 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410109,789,092 - 109,795,631 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110109,803,763 - 109,810,072 (+)NCBI
Celera10104,180,130 - 104,186,669 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
Fscn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,526,830 - 1,533,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,526,830 - 1,533,775 (-)NCBIChiLan1.0ChiLan1.0
FSCN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl9617,609 - 621,882 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.19616,088 - 622,152 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fscn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365945,184,133 - 5,195,340 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FSCN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,300,225 - 1,313,421 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,300,286 - 1,311,562 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,143,345 - 1,156,961 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FSCN2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,472,582 - 73,482,440 (+)NCBI
ChlSab1.1 Ensembl1673,474,519 - 73,481,967 (+)Ensembl
Fscn2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480110,511,539 - 10,518,073 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003831122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000060935   ⟹   ENSPPAP00000038032
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1781,687,051 - 81,694,823 (+)Ensembl
RefSeq Acc Id: XM_003831122   ⟹   XP_003831170
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11781,687,051 - 81,694,823 (+)NCBI
Mhudiblu_PPA_v01775,974,971 - 75,993,275 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003831170 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003831170   ⟸   XM_003831122
- Sequence:
RefSeq Acc Id: ENSPPAP00000038032   ⟸   ENSPPAT00000060935
Protein Domains
Fascin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041749 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000038032 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060935 UniProtKB/TrEMBL
InterPro Actin-crosslinking UniProtKB/TrEMBL
  Fascin UniProtKB/TrEMBL
  Fascin-domain UniProtKB/TrEMBL
  Fascin_metazoans UniProtKB/TrEMBL
  FSCN2 UniProtKB/TrEMBL
NCBI Gene FSCN2 ENTREZGENE
PANTHER PTHR10551 UniProtKB/TrEMBL
  PTHR10551:SF24 UniProtKB/TrEMBL
Pfam Fascin UniProtKB/TrEMBL
PIRSF Fascin UniProtKB/TrEMBL
Superfamily-SCOP SSF50405 UniProtKB/TrEMBL
UniProt A0A2R9CIL0_PANPA UniProtKB/TrEMBL