Symbol: |
FSCN2 |
Name: |
fascin actin-bundling protein 2, retinal |
RGD ID: |
11744023 |
Description: |
ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); protein-macromolecule adaptor activity (inferred); INVOLVED IN actin filament bundle assembly (inferred); actin filament organization (inferred); cell migration (inferred); ASSOCIATED WITH auditory system disease (ortholog); fundus dystrophy (ortholog); Leber congenital amaurosis (ortholog); FOUND IN actin cytoskeleton (inferred); cytoplasm (inferred); cytoskeleton (inferred) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
fascin homolog 2, actin-bundling protein, retinal; fascin-2 |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly |
Position: |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 19 | 98,111,412 - 98,126,571 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 17 | 103,013,967 - 103,024,231 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 17 | 75,974,971 - 75,993,275 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 17 | 81,687,051 - 81,694,823 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 17 | 81,687,051 - 81,694,823 (+) | Ensembl | panpan1.1 | | panPan2 | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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FSCN2 | Bonobo | fundus dystrophy | | ISO | RGD:1319003 | 8554872 | ClinVar Annotator: match by term: Retinal dystrophy | ClinVar | PMID:11527955|PMID:14609921|PMID:15994872|PMID:16280978|PMID:16799052|PMID:17251446|PMID:18450588|PMID:24618324|PMID:25741868|PMID:28492532|PMID:28512305|PMID:33946315 | FSCN2 | Bonobo | Leber congenital amaurosis | | ISO | RGD:1319003 | 8554872 | ClinVar Annotator: match by term: Leber congenital amaurosis | ClinVar | PMID:11527955|PMID:14609921|PMID:15994872|PMID:16280978|PMID:16799052|PMID:17251446|PMID:18450588|PMID:28492532 | FSCN2 | Bonobo | macular degeneration | | ISO | RGD:1319003 | 8554872 | ClinVar Annotator: match by term: Macular degeneration | ClinVar | PMID:11527955|PMID:14609921|PMID:15994872|PMID:16280978|PMID:16799052|PMID:17251446|PMID:18450588|PMID:28492532 | FSCN2 | Bonobo | Meniere's disease | | ISO | RGD:1319003 | 8554872 | ClinVar Annotator: match by term: Meniere disease | ClinVar | PMID:28492532 | FSCN2 | Bonobo | retinitis pigmentosa 30 | | ISO | RGD:1319003 | 8554872 | ClinVar Annotator: match by term: FSCN2-related condition | ClinVar Annotator: match by term: Retinitis pigmentosa more ... | ClinVar | PMID:11527955|PMID:14609921|PMID:15994872|PMID:16280978|PMID:16799052|PMID:17251446|PMID:17576681|PMID:18450588|PMID:25741868|PMID:28492532|PMID:34996991|PMID:9536098 |
FSCN2 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 19 | 98,111,412 - 98,126,571 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 17 | 103,013,967 - 103,024,231 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 17 | 75,974,971 - 75,993,275 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 17 | 81,687,051 - 81,694,823 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 17 | 81,687,051 - 81,694,823 (+) | Ensembl | panpan1.1 | | panPan2 | |
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FSCN2 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 81,515,062 - 81,537,130 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 81,528,377 - 81,537,130 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 79,495,403 - 79,504,156 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 17 | 77,110,012 - 77,114,632 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 17 | 77,110,016 - 77,114,631 | NCBI | | | | | Celera | 17 | 76,139,079 - 76,148,244 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | q25.3 | NCBI | | | | | HuRef | 17 | 74,944,167 - 74,951,874 (+) | NCBI | | HuRef | | | CHM1_1 | 17 | 79,581,654 - 79,590,360 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 82,430,273 - 82,454,442 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Fscn2 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 11 | 120,250,991 - 120,258,999 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 120,252,360 - 120,258,994 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 120,360,165 - 120,368,173 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 120,361,534 - 120,368,168 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 120,222,848 - 120,229,487 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 120,177,624 - 120,184,261 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 132,096,284 - 132,102,924 (+) | NCBI | | Celera | | | Cytogenetic Map | 11 | E2 | NCBI | | | | | cM Map | 11 | 84.08 | NCBI | | | | |
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Fscn2 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 10 | 106,121,038 - 106,139,683 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 105,634,783 - 105,641,322 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 105,634,783 - 105,641,322 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 110,739,192 - 110,745,719 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 110,202,211 - 110,208,738 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 105,555,265 - 105,561,804 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 109,528,307 - 109,540,675 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 109,533,487 - 109,540,026 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 109,128,055 - 109,134,594 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 109,789,092 - 109,795,631 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 10 | 109,803,763 - 109,810,072 (+) | NCBI | | | | | Celera | 10 | 104,180,130 - 104,186,669 (+) | NCBI | | Celera | | | Cytogenetic Map | 10 | q32.3 | NCBI | | | | |
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Fscn2 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955506 | 1,526,830 - 1,533,775 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955506 | 1,526,830 - 1,533,775 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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FSCN2 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 9 | 616,088 - 622,152 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 9 | 617,609 - 621,882 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 9 | 1,218,766 - 1,224,987 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 9 | 1,210,196 - 1,216,414 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 9 | 1,211,869 - 1,216,141 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 9 | 1,234,897 - 1,241,112 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 9 | 1,360,741 - 1,366,958 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 9 | 1,440,630 - 1,446,849 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Fscn2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405602 | 1,216,619 - 1,227,828 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936594 | 5,184,628 - 5,191,985 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936594 | 5,184,133 - 5,195,340 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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FSCN2 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 12 | 1,300,055 - 1,309,778 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 12 | 1,300,286 - 1,311,562 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 12 | 1,143,345 - 1,156,961 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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FSCN2 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 16 | 73,472,582 - 73,482,440 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 16 | 73,474,519 - 73,481,967 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666077 | 44,854,818 - 44,864,455 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Fscn2 (Heterocephalus glaber - naked mole-rat) |
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Ensembl Acc Id: |
ENSPPAT00000060935 ⟹ ENSPPAP00000038032 |
Type: |
CODING |
Position: |
Bonobo Assembly | Chr | Position (strand) | Source |
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PanPan1.1 Ensembl | 17 | 81,687,051 - 81,694,823 (+) | Ensembl |
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RefSeq Acc Id: |
XM_003831122 ⟹ XP_003831170 |
Type: |
CODING |
Position: |
Bonobo Assembly | Chr | Position (strand) | Source |
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NHGRI_mPanPan1-v2 | 19 | 98,111,412 - 98,126,571 (+) | NCBI | NHGRI_mPanPan1 | 17 | 103,013,967 - 103,024,231 (+) | NCBI | Mhudiblu_PPA_v0 | 17 | 75,974,971 - 75,993,275 (+) | NCBI | PanPan1.1 | 17 | 81,687,051 - 81,694,823 (+) | NCBI |
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Sequence: |
TGCCCGCAGGCCCTCTAAGAGCTGCCCAGGCTGCTGCCGCGGGTCAGAGGCGGGTCAGAGCAGGCAGGGGGTTCATGACGCCGGCTGGGTCTGGGGGCTGTGGGCCAGCCGAGCCGACCCGGGCTTCT GGGGGACCGCGGGGGCCGTGAGCACTCAGAGGGCGCATCCCAGGCCCCTCCGGGGACCCGGCCAGCCTGAAGATGCCGACGAACGGCCTGCACCAGGTGCTGAAGATCCAGTTTGGCCTCGTCAACGA CACTGACCGCTACCTGACAGCTGAGAGCTTCGGCTTCAAGGTCAATGCCTCGGCACCCAGCCTCAAGAGGAAGCAGACCTGGGTGCTGGAACCCGACCCAGGACGAGGCACGGCTGTGCTGCTCCGCA GCAGCCACCTGGGCCGCTACCTGTCGGCAGGAGAGGACGGGCGCGTGGCCTGCGAGGCAGAGCAGCCGGGCCGTGACTGCCGCTTCCTGGTCCTGCCGCAGCCAGACGGGCGCTGGGTGCTGCGGTCC GAGCCGCACGGCCGCTTCTTCGGAGGCACCGAGGACCAGCTGTCCTGCTTCGCCACAGCCGTTTCCCCGGCCGAGCTGTGGACCGTGCACCTGGCCATCCACCCGCAGGCCCACCTGCTGAGCGTGAG CCGGCGGCGCTACGTGCACCTGTGCCCGCGGGAGGACGAGATGGCCGCAGACGGAGACAAGCCCTGGGGCGTGGACGCCCTCCTCACCCTCATCTTCCGGAGCCGACGGTACTGCCTCAAGTCCTGTG ACAGCCGCTACCTGCGCAGCGACGGCCGCCTGGTCTGGGAGCCTGAGCCCCGCGCCTGCTACACGCTGGAGTTCAAGGCGGGCAGGCTGGCCTTCAAGGACTGCGACGGCCACTACCTGGCACCCGTG GGGCCCGCAGGCACTCTCAAGGCCGGCCGAAACACGCGACCCGGCAAGGATGAGCTCTTTGATCTGGAGGAGAGTCACCCACAGGTGGTGCTGGTGGCTGCCAACCACCGCTACGTCTCTGTGCGGCA AGGGGTCAACGTCTCAGCCAATCAGGATGATGAACTAGACCACGAGACCTTCCTGATGCAAATTGACCAGGAGACAAAGAAGTGCACCTTCTATTCCAGCACTGGGGGCTACTGGACACTGGTCACCC ATGGGGGCATTCACGCCACAGCCACACAAGTTTCCGCCAACACCATGTTTGAGATGGAGTGGCGTGGCCGGCGGGTAGCACTCAAAGCCAGCAATGGGCGCTACGTGTGCATGAAGAAGAATGGGCAG CTGGCGGCTATCAGCGATTTTGTCGGCAAGGACGAAGAGTTCACCCTCAAGCTCATCAACCGGCCCATCCTGGTGCTGCGCGGCCTGGACGGCTTCGTCTGCCACCACCGCGGCTCCAACCAGCTGGA CACCAACCGCTCCGTCTACGACGTCTTCCACCTGAGCTTCAGCGACGGCGCCTACCACATCCGAGGCCGCGACGGAGGGTTCTGGTACACGGGCAGCCACGGCAGCGTGTGCAGCGACGGCGAACGCG CCGAGGACTTCGTCTTCGAGTTCCGCGAACGCGGCCGCCTGGCCATCCGCGCCCGGAGTGGCAAGTACCTGCGCGGCGGCGCCTCGGGCCTGCTGCGGGCCGACGCCGACGCCCCGGCCGGGACCGCG CTTTGGGAGTACTGAGGCCGCGCCCAGACCAGCCTGTCGCGCATTAAAACCGTGTCTCTCCCGCA
hide sequence
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RefSeq Acc Id: |
XM_055101983 ⟹ XP_054957958 |
Type: |
CODING |
Position: |
Bonobo Assembly | Chr | Position (strand) | Source |
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NHGRI_mPanPan1-v2 | 19 | 98,111,412 - 98,126,571 (+) | NCBI | NHGRI_mPanPan1 | 17 | 103,013,967 - 103,024,231 (+) | NCBI |
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RefSeq Acc Id: |
XP_003831170 ⟸ XM_003831122 |
- Peptide Label: |
isoform X2 |
- Sequence: |
MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGRGTAVLLRSSHLGRYLSAGEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSCFATAVSPA ELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGRLAFKDCDGHYLAPVGPAGTLKAGRNTRPGKDELFDLEE SHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQETKKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQLAAISDFVGKDEEFTLKLINRPIL VLRGLDGFVCHHRGSNQLDTNRSVYDVFHLSFSDGAYHIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY
hide sequence
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Ensembl Acc Id: |
ENSPPAP00000038032 ⟸ ENSPPAT00000060935 |
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RefSeq Acc Id: |
XP_054957958 ⟸ XM_055101983 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A2R9CIL0 (UniProtKB/TrEMBL) |
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