LOC100972985 (meiosis specific with OB-fold) - Rat Genome Database

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Gene: LOC100972985 (meiosis specific with OB-fold) Pan paniscus
Analyze
Symbol: LOC100972985
Name: meiosis specific with OB-fold
RGD ID: 11696594
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); single-stranded DNA 3'-5' DNA exonuclease activity (inferred); INVOLVED IN double-strand break repair via homologous recombination (inferred); female meiosis I (inferred); fertilization (inferred); ASSOCIATED WITH azoospermia (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MEIOB; meiosis specific with OB domains
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,479,191 - 2,517,954 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,261,166 - 6,299,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016835,420 - 874,178 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1161,927,145 - 1,956,522 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100972985
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,479,191 - 2,517,954 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,261,166 - 6,299,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016835,420 - 874,178 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1161,927,145 - 1,956,522 (-)NCBIpanpan1.1PanPan1.1panPan2
MEIOB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,833,986 - 1,872,164 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,833,986 - 1,872,178 (-)EnsemblGRCh38hg38GRCh38
GRCh37161,883,987 - 1,922,165 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,823,990 - 1,850,456 (-)NCBINCBI36Build 36hg18NCBI36
Celera162,096,249 - 2,134,396 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,806,985 - 1,847,146 (-)NCBIHuRef
CHM1_1161,883,971 - 1,922,162 (-)NCBICHM1_1
T2T-CHM13v2.0161,849,860 - 1,889,999 (-)NCBIT2T-CHM13v2.0
Meiob
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,023,275 - 25,058,762 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,023,263 - 25,058,762 (+)EnsemblGRCm39 Ensembl
GRCm381724,804,301 - 24,839,788 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,804,289 - 24,839,788 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,941,327 - 24,976,732 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,556,727 - 24,567,387 (+)NCBIMGSCv36mm8
Celera1725,332,560 - 25,366,618 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Meiob
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,336,869 - 14,369,566 (+)NCBIGRCr8
mRatBN7.21013,833,170 - 13,865,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,833,750 - 13,865,046 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,580,847 - 18,612,105 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,069,707 - 18,100,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,568,920 - 13,600,178 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,174,645 - 14,206,026 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,174,732 - 14,206,025 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,990,663 - 14,022,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,061,839 - 14,093,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1013,512,997 - 13,544,262 (+)NCBICelera
Cytogenetic Map10q12NCBI
Meiob
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,409,344 - 15,444,996 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,409,344 - 15,444,996 (+)NCBIChiLan1.0ChiLan1.0
MEIOB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,048,335 - 39,075,957 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,048,278 - 39,076,035 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,287,548 - 40,315,129 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,364,859 - 39,392,466 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,367,207 - 39,392,427 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,041,622 - 39,069,201 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,014,167 - 39,041,761 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,492,885 - 39,520,472 (+)NCBIUU_Cfam_GSD_1.0
Meiob
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,533,184 - 104,566,720 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366942,099,967 - 2,176,279 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEIOB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,092,530 - 40,133,171 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,092,689 - 40,133,173 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MEIOB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,738,250 - 1,779,412 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,738,275 - 1,773,727 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,300,403 - 29,345,355 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Meiob
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913394,154 - 426,196 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913389,772 - 426,196 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034940978   ⟹   XP_034796869
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,479,206 - 2,517,954 (+)NCBI
NHGRI_mPanPan1166,261,190 - 6,299,945 (+)NCBI
Mhudiblu_PPA_v016835,438 - 874,178 (+)NCBI
RefSeq Acc Id: XM_034940980   ⟹   XP_034796871
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,479,191 - 2,517,954 (+)NCBI
NHGRI_mPanPan1166,261,166 - 6,299,945 (+)NCBI
Mhudiblu_PPA_v016835,420 - 874,178 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034796869 (Get FASTA)   NCBI Sequence Viewer  
  XP_034796871 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018401.1
Reference Protein Sequences
RefSeq Acc Id: XP_034796871   ⟸   XM_034940980
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034796869   ⟸   XM_034940978
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032337 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041133.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
NCBI Gene MEIOB ENTREZGENE
PANTHER MEIOSIS-SPECIFIC WITH OB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
UniProt A0A2R9AM15_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100972985  meiosis specific with OB-fold  MEIOB  meiosis specific with OB-fold  Symbol and/or name change 5135510 APPROVED
2023-04-25 MEIOB  meiosis specific with OB-fold  LOC100972985  meiosis specific with OB-fold  Symbol and/or name change 5135510 APPROVED
2020-07-01 LOC100972985  meiosis specific with OB-fold  MEIOB  meiosis specific with OB-fold  Symbol and/or name change 5135510 APPROVED
2019-01-15 MEIOB  meiosis specific with OB-fold    meiosis specific with OB domains  Symbol and/or name change 5135510 APPROVED