SMIM7 (small integral membrane protein 7) - Rat Genome Database

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Gene: SMIM7 (small integral membrane protein 7) Pan paniscus
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Symbol: SMIM7
Name: small integral membrane protein 7
RGD ID: 11694198
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UPF0608 protein C19orf42-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22021,503,003 - 21,531,892 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11920,509,090 - 20,538,482 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,121,450 - 16,149,780 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,099,476 - 17,128,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,115,036 - 17,128,899 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
SMIM7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22021,503,003 - 21,531,892 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11920,509,090 - 20,538,482 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,121,450 - 16,149,780 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,099,476 - 17,128,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,115,036 - 17,128,899 (-)Ensemblpanpan1.1panPan2
SMIM7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381916,630,751 - 16,660,144 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1916,630,751 - 16,660,442 (-)EnsemblGRCh38hg38GRCh38
GRCh371916,756,959 - 16,770,955 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,617,959 - 16,631,968 (-)NCBINCBI36Build 36hg18NCBI36
Celera1916,658,798 - 16,672,807 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,325,671 - 16,339,680 (-)NCBIHuRef
CHM1_11916,756,458 - 16,770,467 (-)NCBICHM1_1
T2T-CHM13v2.01916,765,542 - 16,795,838 (-)NCBIT2T-CHM13v2.0
Smim7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,319,042 - 73,324,892 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl873,319,032 - 73,324,932 (-)EnsemblGRCm39 Ensembl
GRCm38872,565,198 - 72,571,048 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,565,188 - 72,571,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv37875,089,097 - 75,094,947 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,494,187 - 75,500,037 (-)NCBIMGSCv36mm8
Celera876,911,534 - 76,917,386 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map835.08NCBI
Smim7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,308,466 - 17,312,384 (+)NCBIGRCr8
mRatBN7.21617,274,417 - 17,278,336 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,273,258 - 17,278,336 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,343,093 - 17,347,014 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,474,074 - 18,477,987 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,396,017 - 17,399,938 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01618,975,746 - 18,979,664 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1618,975,746 - 18,979,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01618,838,290 - 18,842,208 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,685,244 - 17,689,162 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1617,494,238 - 17,498,155 (+)NCBICelera
Cytogenetic Map16p14NCBI
Smim7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495577311,432 - 22,562 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495577311,432 - 22,562 (-)NCBIChiLan1.0ChiLan1.0
SMIM7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,895,891 - 45,908,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,809,395 - 45,821,574 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,382,868 - 46,395,010 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12045,618,122 - 45,630,252 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,028,689 - 46,041,031 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,304,039 - 46,316,181 (+)NCBIUU_Cfam_GSD_1.0
Smim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,435,837 - 204,443,456 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,985,035 - 3,992,274 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,985,032 - 3,992,274 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,961,363 - 60,976,497 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,961,532 - 60,970,775 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,549,159 - 60,557,590 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMIM7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,154,397 - 15,169,006 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660744,299,725 - 4,331,592 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908850,769 - 860,874 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908850,164 - 867,427 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000051882   ⟹   ENSPPAP00000029034
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1917,115,036 - 17,128,899 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000051885   ⟹   ENSPPAP00000029037
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1917,115,597 - 17,116,117 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000051891   ⟹   ENSPPAP00000029043
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1917,116,114 - 17,128,820 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000051893   ⟹   ENSPPAP00000029045
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1917,121,620 - 17,128,820 (-)Ensembl
RefSeq Acc Id: XM_003813555   ⟹   XP_003813603
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22021,518,291 - 21,531,892 (-)NCBI
NHGRI_mPanPan11920,512,131 - 20,538,482 (-)NCBI
Mhudiblu_PPA_v01916,135,773 - 16,149,780 (-)NCBI
PanPan1.11917,115,036 - 17,128,899 (-)NCBI
Sequence:
RefSeq Acc Id: XR_008622117
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22021,518,291 - 21,531,892 (-)NCBI
NHGRI_mPanPan11920,512,131 - 20,538,482 (-)NCBI
RefSeq Acc Id: XR_008622118
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22021,503,003 - 21,531,892 (-)NCBI
NHGRI_mPanPan11920,509,090 - 20,538,482 (-)NCBI
RefSeq Acc Id: XR_008622119
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22021,503,003 - 21,531,892 (-)NCBI
NHGRI_mPanPan11920,509,090 - 20,538,482 (-)NCBI
RefSeq Acc Id: XR_008622120
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22021,503,003 - 21,531,892 (-)NCBI
NHGRI_mPanPan11920,509,090 - 20,538,482 (-)NCBI
RefSeq Acc Id: XR_610942
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22021,518,291 - 21,531,892 (-)NCBI
NHGRI_mPanPan11920,512,131 - 20,538,482 (-)NCBI
Mhudiblu_PPA_v01916,135,773 - 16,149,780 (-)NCBI
PanPan1.11917,115,036 - 17,128,899 (-)NCBI
Sequence:
RefSeq Acc Id: XR_610943
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22021,503,003 - 21,531,892 (-)NCBI
NHGRI_mPanPan11920,509,090 - 20,538,482 (-)NCBI
Mhudiblu_PPA_v01916,121,450 - 16,149,780 (-)NCBI
PanPan1.11917,099,476 - 17,128,899 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003813603 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029034
  ENSPPAP00000029034.1
  ENSPPAP00000029037.1
  ENSPPAP00000029043.1
  ENSPPAP00000029045.1
RefSeq Acc Id: XP_003813603   ⟸   XM_003813555
- UniProtKB: A0A2R9BHA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000029037   ⟸   ENSPPAT00000051885
RefSeq Acc Id: ENSPPAP00000029034   ⟸   ENSPPAT00000051882
RefSeq Acc Id: ENSPPAP00000029043   ⟸   ENSPPAT00000051891
RefSeq Acc Id: ENSPPAP00000029045   ⟸   ENSPPAT00000051893


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037541 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051882.1 UniProtKB/TrEMBL
  ENSPPAT00000051885.1 UniProtKB/TrEMBL
  ENSPPAT00000051891.1 UniProtKB/TrEMBL
  ENSPPAT00000051893.1 UniProtKB/TrEMBL
InterPro SMIM7 UniProtKB/TrEMBL
KEGG Report pps:100990600 UniProtKB/TrEMBL
NCBI Gene SMIM7 ENTREZGENE
PANTHER PTHR28622 UniProtKB/TrEMBL
  SMALL INTEGRAL MEMBRANE PROTEIN 7 UniProtKB/TrEMBL
UniProt A0A2R9BHA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BHB0_PANPA UniProtKB/TrEMBL
  A0A2R9BI92_PANPA UniProtKB/TrEMBL
  A0A2R9BKW4_PANPA UniProtKB/TrEMBL