Smim7 (small integral membrane protein 7)

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Gene: Smim7 (small integral membrane protein 7) Mus musculus

Analyze

Symbol:

Smim7

Name:

small integral membrane protein 7

RGD ID:

1620042

MGI Page

MGI

Description:

Predicted to localize to integral component of membrane. Orthologous to human SMIM7 (small integral membrane protein 7); INTERACTS WITH 1,2-dimethylhydrazine; atrazine; carbon nanotube.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

9130011J15Rik; hypothetical protein LOC66818; UPF0608 protein C19orf42 homolog

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	73,319,042 - 73,324,892 (-)	NCBI	GRCm39		mm39
GRCm38	8	72,565,198 - 72,571,048 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	72,565,188 - 72,571,088 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	75,089,097 - 75,094,947 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	75,494,187 - 75,500,037 (-)	NCBI			mm8
Celera	8	76,911,534 - 76,917,386 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

alpha-pinene (ISO)

atrazine (EXP)

bisphenol A (ISO)

carbon nanotube (EXP)

clobetasol (EXP)

crocidolite asbestos (EXP)

dexamethasone (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (EXP)

folic acid (EXP)

formaldehyde (ISO)

glafenine (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methyl methanesulfonate (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

ozone (ISO)

paracetamol (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tert-butyl hydroperoxide (ISO)

theophylline (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

integral component of membrane (IEA)

membrane (IEA)

Molecular Function

molecular_function (ND)

References

References - curated


1.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11544199	PMID:12466851	PMID:12477932	PMID:14610273	PMID:15782199	PMID:16141072
PMID:16141073	PMID:16778019	PMID:18799693	PMID:21677750

Genomics

Comparative Map Data

Smim7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	73,319,042 - 73,324,892 (-)	NCBI	GRCm39		mm39
GRCm38	8	72,565,198 - 72,571,048 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	72,565,188 - 72,571,088 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	75,089,097 - 75,094,947 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	75,494,187 - 75,500,037 (-)	NCBI			mm8
Celera	8	76,911,534 - 76,917,386 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

SMIM7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	16,630,751 - 16,660,442 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	19	16,577,642 - 16,660,115 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	16,630,741 - 16,660,144 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	16,741,562 - 16,770,968 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	16,617,959 - 16,631,968 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	19	16,658,798 - 16,672,807 (-)	NCBI
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	16,325,671 - 16,339,680 (-)	NCBI		HuRef
CHM1_1	19	16,756,458 - 16,770,467 (-)	NCBI		CHM1_1

Smim7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	18,975,746 - 18,979,664 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	18,975,746 - 18,979,651 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	18,838,290 - 18,842,208 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	17,685,244 - 17,689,162 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	16	17,494,238 - 17,498,155 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Smim7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955773	11,432 - 22,562 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955773	11,432 - 22,562 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMIM7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	17,099,476 - 17,128,899 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,115,036 - 17,128,899 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	16,121,450 - 16,149,780 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SMIM7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,895,891 - 45,908,107 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Smim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936596	3,985,032 - 3,992,274 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMIM7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,961,363 - 60,976,448 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,961,532 - 60,970,775 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	60,549,159 - 60,557,590 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SMIM7
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,154,397 - 15,169,006 (-)	NCBI

Smim7
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624908	850,164 - 867,427 (+)	NCBI

Position Markers

UniSTS:235927

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	72,572,579 - 72,572,787	UniSTS	GRCm38
MGSCv37	8	75,096,478 - 75,096,686	UniSTS	GRCm37
Celera	8	76,918,917 - 76,919,125	UniSTS
Cytogenetic Map	8	B3.3	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	71396181	105396393	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1072
Count of miRNA genes:	593
Interacting mature miRNAs:	691
Transcripts:	ENSMUST00000058733, ENSMUST00000163745, ENSMUST00000167290
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_172396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC172623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF140607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK009731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK018610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK035786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK148562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK149156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK151539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK152451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK152748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK169625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK186598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK187677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK188828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK206814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK207517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK215124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK217818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK218215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC037511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC055692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC060963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ709379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000058733 ⟹ ENSMUSP00000059943

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	72,567,487 - 72,571,049 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000163745

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	72,570,588 - 72,571,062 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000167290 ⟹ ENSMUSP00000127441

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	72,565,188 - 72,571,088 (-)	Ensembl

RefSeq Acc Id:

NM_172396 ⟹ NP_765984

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	73,319,042 - 73,324,892 (-)	NCBI
GRCm38	8	72,565,198 - 72,571,048 (-)	ENTREZGENE
MGSCv37	8	75,089,097 - 75,094,947 (-)	RGD
Celera	8	76,911,534 - 76,917,386 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GGACGCCTTGGGTGTAAGGATGATCGGAGACATACTGCTGTTCGGGACGCTACTGATGAACGCC
GGGGCTGTGCTCAACTTTAAACTGAAAAAGAAGGACACACAAGGCTTTGGGGAAGAATCGAAGG
AACCCAGCACAGGAGACAACATCCGAGAGTTTTTACTAAGCCTGAGGTATTTCCGGATCTTCAT
CGCACTGTGGAATGTGTTCATGATGCTCTGCATGATCGTACTGTTCGGCTCTTGAGTCCTGCGT
GGAACCCAGAGATCACCTGCTGGACATCAAGGCTCTATTTCTGTTTCTGATGACTTCAAGAATC
TTCTCAATGGAAAACCAGGGACCTTCCCAGAAGGCCCAAGCTCATTTGGGTGGAGAATGTCCAT
TTCCCAGCTCCCTGACCCTCGTCAGCCACAGTGACAAAGTCAGACTTTATTAGGAGAAAGACCT
AGGTCTTTACCTTGTGCTGGCATTCTATCTTCTCCTGGCCCAGCTTCTCCAGAAACCTGACCTG
GGCTATTTCTTGGTTGAATTGATGGTGATTGTTTTGGTTTGATTTGGGTGTCTTTGTCTGTTTT
TTTGTTTTTTTGAGACAGGGTTTTTCTGGTTAGCCCTGGCTATTCTGGAACTCACACACCAGAC
GGGCCTCAAACTCATAGAGATCCGCCTGTCTCTGCCTCTCAAGTGCTGGGATTAAAGGTGTATG
CCACCACTCCTGGCCTTGCACAGATTGTCCTTAATTGATGTGACTCAGGCACCTGCTTGCCGGG
CCAGCTATGACAGTCTAGCAGTCTCTTTTGCACTACCAGGTCTATGCTGGTGGACCCAACAGTC
TGGGGCCAGTGAGGTCTTACTTCCAAACGTTTCCTCCTCACCCCATAACTGGGTCTACCTGGGG
CAGCCAAAGATTGCTCCAACATTTGGAGGAGCCGGTCCTCCTCCCTTGGGACACCAGCCTCTTC
TTTAGACACTAAGCTGTTAGCCATAACATACTCAGCTTCTCCAGAAGAGGCCTGTGGAAGAGGT
GCTAGTGGTGATGTTAGCAGACACCTCTCTGTGCTTTCAAGCCACTTGTTAATAAAGTGACTTT
GGGGCCACTCCTTTATTGTTGCTTGTGATGTTGGCAGCGTACTCTGAAGGTTTGGGTTTCTGGG
TCTCTCTTTGAAGGAGGGGAGCTCAAGCTTGAGGTGCATGAGGTTCAGAGGCGACTACGCCATC
AGCTCTGAGATGCGTTCCATCTAGAGATGGCCATGCCGGCAGTGCTGAGGGACTTTAATCAGCA
TTTGAAAGCTGTAGCAGCTGGCTTGCTTTGGGGCTCTCTTTTTGGATTGGTTTCTTTCTTTTCT
TTTTAAAGATTGTTCTGTTTTATATGTATGGTATTCTGCCTGCATGCATGTCTGCACACATGTG
GATGCAGGGCTTGCAGAGGCCAGAAGTCCTCTAATCTGCAGCTAGAGTTACAGCCAGTTGTGAA
CTGTCATGTGAGTGCTGGGTCTTTTGAGAGTGACCTGTGTCCTGAGCCCCTCATTTTGGCTTTT
TTTTAAAGACAGCCCCAAACTGTGGCAGATGACCTTGAACTCCTTATCTTTTCAGTAGTGAGAC
AAGATCCCAATTGAGTACTACCATACCAGGTTTTTTTATTGGCTGGTTGGTTAGTCTTTGAGAC
CATCTTGATGGAATCTGTGCTGATTGAGAACTTTCCATTCTCCTGCCTCAGCCTCTTTAGTGCT
AGAATCCCAAGTGTGTACTACCAACCCTAGTCATAATAGCATTTTACCCCAGGCTTCCCCGGGA
ACTATGGGGAAAACTCTGGTAATGTGGGAACTGGGTCAAGTCTAAGTTCAGGCTGCACAGCTGC
TGCAGACATTGTTGATTGTGTCCTTCACACCCGCAGCATGCCTGAGCCTACCCACTTGCCTAGC
ATTGTAACATGCCACTCTGTTGGCTGATCCCCAGCCTTGGATAGTTGGGATGGCTTTCTGCCTT
TCTCAGCTTAGGACTGTAGTTTCAGGAAAAAAAGGTTCCATTCATTCTGAAGAGGAATTGTGCT
GAAAAAGAATGCTGTCATAGGGTTTGCACTTATTATCTCATTTGAGTTCTGATAAAGTGTTTTT
GGACTACTTACTGTGTGTGTGAAAAATTGAAACCCATGAATCTTCTTGGTTTTTATTATTATTT
ATTTATTTATTTTTGGTTCTGGGCTAGGGCCTTTTGATGCCACTGAACCATATCACCAGCTCTA
TATGTGTGTCTGTTTGGAATGTTGTTCAGAAACTTCTCGTGGCTGGAGATGTAGTTCATGTAGA
GTGACATAGTATAATTTTACAGGAAAGGACTGAGAGTCTGGCTCAGGGGTGGAGTTCCTGCCTA
GAATTTCCCAGTGAGGGGCTGGGGTGTGTGGCTCAGGGATGGGGTCCCTTTCAGAACCATTTGA
GACTCTCAAGTCAGATGTTCTAGAAGCTGTTAAGCAATAGCTCTTTCCCTTGCTATAACCAGAT
ATATGTAACCTGAAGTGACAACCCACTTTGTGCTCCTGAAGGTTAAACCTGTTATCCCAACGTT
ACCACTGGGATATGGAGTTTCAGTTAAATTGTCTCTCACGCTTAAGAGCTACAAGATATGAAGT
GCTGTCTTCTGCCTCCCACCACCCAGCCTGAACAAATAAGCCCTCTTTTTATCCCTTCTTTACA
ACACTGACAAACACACAGGTCAAGTTGTCCACAAGTGATCATGCTGGGATGCTGCAGAGCGGAG
GACTGTGTTGTACTGGGTCTACCTGATTATAGTGTCGCACATACAGCCACAAGCATATGCTGTG
TGCAAATAAAAAACAAAAGAGTTACC

hide sequence

Protein Sequences


Protein RefSeqs	NP_765984	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH37511	(Get FASTA)	NCBI Sequence Viewer
	AAH55692	(Get FASTA)	NCBI Sequence Viewer
	EDL10806	(Get FASTA)	NCBI Sequence Viewer
	Q5RKS2	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_765984 ⟸ NM_172396
- Peptide Label:	precursor
- UniProtKB:	Q5RKS2 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESKEPSTGDNIREFLLSLRYFRIFIALWNVF MMLCMIVLFGS hide sequence

RefSeq Acc Id:

ENSMUSP00000127441 ⟸ ENSMUST00000167290

RefSeq Acc Id:

ENSMUSP00000059943 ⟸ ENSMUST00000058733

Promoters

RGD ID:

8667483

Promoter ID:

EPDNEW_M11773

Type:

multiple initiation site

Name:

Smim7_1

Description:

Mus musculus small integral membrane protein 7 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	72,571,058 - 72,571,118	EPDNEW

RGD ID:

6842561

Promoter ID:

MM_KWN:54876

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6

Transcripts:

ENSMUST00000058733

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	75,094,586 - 75,095,952 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1914068	AgrOrtholog
Ensembl Genes	ENSMUSG00000044600	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000059943	UniProtKB/TrEMBL
	ENSMUSP00000127441	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000058733	UniProtKB/TrEMBL
	ENSMUST00000167290	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	SMIM7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:66818	UniProtKB/Swiss-Prot
MGD	MGI:1914068	ENTREZGENE
NCBI Gene	66818	ENTREZGENE
PANTHER	PTHR28622	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Smim7	PhenoGen
UniGene	Mm.22565	ENTREZGENE
UniProt	F8WIU9_MOUSE	UniProtKB/TrEMBL
	Q5RKS2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-11-27	Smim7	small integral membrane protein 7	9130011J15Rik	RIKEN cDNA 9130011J15 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)