Smim7 (small integral membrane protein 7) - Rat Genome Database
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Gene: Smim7 (small integral membrane protein 7) Mus musculus
Analyze
Symbol: Smim7
Name: small integral membrane protein 7
RGD ID: 1620042
MGI Page MGI
Description: Predicted to localize to integral component of membrane. Orthologous to human SMIM7 (small integral membrane protein 7); INTERACTS WITH 1,2-dimethylhydrazine; atrazine; carbon nanotube.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9130011J15Rik; hypothetical protein LOC66818; UPF0608 protein C19orf42 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,319,042 - 73,324,892 (-)NCBIGRCm39mm39
GRCm38872,565,198 - 72,571,048 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,565,188 - 72,571,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv37875,089,097 - 75,094,947 (-)NCBIGRCm37mm9NCBIm37
MGSCv36875,494,187 - 75,500,037 (-)NCBImm8
Celera876,911,534 - 76,917,386 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16778019   PMID:18799693   PMID:21677750  


Genomics

Comparative Map Data
Smim7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,319,042 - 73,324,892 (-)NCBIGRCm39mm39
GRCm38872,565,198 - 72,571,048 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,565,188 - 72,571,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv37875,089,097 - 75,094,947 (-)NCBIGRCm37mm9NCBIm37
MGSCv36875,494,187 - 75,500,037 (-)NCBImm8
Celera876,911,534 - 76,917,386 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
SMIM7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1916,630,751 - 16,660,442 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1916,577,642 - 16,660,115 (-)EnsemblGRCh38hg38GRCh38
GRCh381916,630,741 - 16,660,144 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371916,741,562 - 16,770,968 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,617,959 - 16,631,968 (-)NCBINCBI36hg18NCBI36
Celera1916,658,798 - 16,672,807 (-)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1916,325,671 - 16,339,680 (-)NCBIHuRef
CHM1_11916,756,458 - 16,770,467 (-)NCBICHM1_1
Smim7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01618,975,746 - 18,979,664 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1618,975,746 - 18,979,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01618,838,290 - 18,842,208 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,685,244 - 17,689,162 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1617,494,238 - 17,498,155 (+)NCBICelera
Cytogenetic Map16p14NCBI
Smim7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495577311,432 - 22,562 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495577311,432 - 22,562 (-)NCBIChiLan1.0ChiLan1.0
SMIM7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11917,099,476 - 17,128,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,115,036 - 17,128,899 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01916,121,450 - 16,149,780 (-)NCBIMhudiblu_PPA_v0panPan3
SMIM7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,895,891 - 45,908,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Smim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365963,985,032 - 3,992,274 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,961,363 - 60,976,448 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,961,532 - 60,970,775 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,549,159 - 60,557,590 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMIM7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,154,397 - 15,169,006 (-)NCBI
Smim7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624908850,164 - 867,427 (+)NCBI

Position Markers
UniSTS:235927  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38872,572,579 - 72,572,787UniSTSGRCm38
MGSCv37875,096,478 - 75,096,686UniSTSGRCm37
Celera876,918,917 - 76,919,125UniSTS
Cytogenetic Map8B3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1072
Count of miRNA genes:593
Interacting mature miRNAs:691
Transcripts:ENSMUST00000058733, ENSMUST00000163745, ENSMUST00000167290
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_172396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC172623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF140607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ709379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000058733   ⟹   ENSMUSP00000059943
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,567,487 - 72,571,049 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163745
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,570,588 - 72,571,062 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167290   ⟹   ENSMUSP00000127441
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,565,188 - 72,571,088 (-)Ensembl
RefSeq Acc Id: NM_172396   ⟹   NP_765984
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39873,319,042 - 73,324,892 (-)NCBI
GRCm38872,565,198 - 72,571,048 (-)ENTREZGENE
MGSCv37875,089,097 - 75,094,947 (-)RGD
Celera876,911,534 - 76,917,386 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_765984 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH37511 (Get FASTA)   NCBI Sequence Viewer  
  AAH55692 (Get FASTA)   NCBI Sequence Viewer  
  EDL10806 (Get FASTA)   NCBI Sequence Viewer  
  Q5RKS2 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_765984   ⟸   NM_172396
- Peptide Label: precursor
- UniProtKB: Q5RKS2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000127441   ⟸   ENSMUST00000167290
RefSeq Acc Id: ENSMUSP00000059943   ⟸   ENSMUST00000058733

Promoters
RGD ID:8667483
Promoter ID:EPDNEW_M11773
Type:multiple initiation site
Name:Smim7_1
Description:Mus musculus small integral membrane protein 7 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38872,571,058 - 72,571,118EPDNEW
RGD ID:6842561
Promoter ID:MM_KWN:54876
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000058733
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36875,094,586 - 75,095,952 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914068 AgrOrtholog
Ensembl Genes ENSMUSG00000044600 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000059943 UniProtKB/TrEMBL
  ENSMUSP00000127441 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000058733 UniProtKB/TrEMBL
  ENSMUST00000167290 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro SMIM7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66818 UniProtKB/Swiss-Prot
MGD MGI:1914068 ENTREZGENE
NCBI Gene 66818 ENTREZGENE
PANTHER PTHR28622 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Smim7 PhenoGen
UniGene Mm.22565 ENTREZGENE
UniProt F8WIU9_MOUSE UniProtKB/TrEMBL
  Q5RKS2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Smim7  small integral membrane protein 7  9130011J15Rik  RIKEN cDNA 9130011J15 gene  Symbol and/or name change 5135510 APPROVED