Smim7 (small integral membrane protein 7)

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Gene: Smim7 (small integral membrane protein 7) Chinchilla lanigera

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Symbol:

Smim7

Name:

small integral membrane protein 7

RGD ID:

9049067

Description:

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955773	11,432 - 22,562 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955773	11,432 - 22,562 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Smim7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955773	11,432 - 22,562 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955773	11,432 - 22,562 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMIM7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	16,630,751 - 16,660,144 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	16,630,751 - 16,660,442 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	16,756,959 - 16,770,955 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	16,617,959 - 16,631,968 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	16,658,798 - 16,672,807 (-)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	16,325,671 - 16,339,680 (-)	NCBI		HuRef
CHM1_1	19	16,756,458 - 16,770,467 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	16,765,542 - 16,795,838 (-)	NCBI		T2T-CHM13v2.0

Smim7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	73,319,042 - 73,324,892 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	73,319,032 - 73,324,932 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	72,565,198 - 72,571,048 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	72,565,188 - 72,571,088 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	75,089,097 - 75,094,947 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	75,494,187 - 75,500,037 (-)	NCBI		MGSCv36	mm8
Celera	8	76,911,534 - 76,917,386 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	35.08	NCBI

Smim7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	17,308,466 - 17,312,384 (+)	NCBI		GRCr8
mRatBN7.2	16	17,274,417 - 17,278,336 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	17,273,258 - 17,278,336 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	17,343,093 - 17,347,014 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	18,474,074 - 18,477,987 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	17,396,017 - 17,399,938 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	18,975,746 - 18,979,664 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	18,975,746 - 18,979,651 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	18,838,290 - 18,842,208 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	17,685,244 - 17,689,162 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	17,494,238 - 17,498,155 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

SMIM7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	21,503,003 - 21,531,892 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	20,509,090 - 20,538,482 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	16,121,450 - 16,149,780 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	17,099,476 - 17,128,899 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,115,036 - 17,128,899 (-)	Ensembl	panpan1.1		panPan2

SMIM7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,895,891 - 45,908,107 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	45,809,395 - 45,821,574 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	46,382,868 - 46,395,010 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	20	45,618,122 - 45,630,252 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	46,028,689 - 46,041,031 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	46,304,039 - 46,316,181 (+)	NCBI		UU_Cfam_GSD_1.0

Smim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	204,435,837 - 204,443,456 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	3,985,035 - 3,992,274 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	3,985,032 - 3,992,274 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMIM7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,961,363 - 60,976,497 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,961,532 - 60,970,775 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	60,549,159 - 60,557,590 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SMIM7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,154,397 - 15,169,006 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666074	4,299,725 - 4,331,592 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smim7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	850,769 - 860,874 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	850,164 - 867,427 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005415106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01078319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCB01023831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000000503 ⟹ ENSCLAP00000000474

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955773	11,432 - 22,562 (-)	Ensembl

RefSeq Acc Id:

XM_005415106 ⟹ XP_005415163

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955773	11,432 - 22,562 (-)	NCBI

Sequence:

show sequence

CGCGAAGCCTCCCGGGCGAGGAGGGGCGCTCGCATTCTCCTGGCTCTCAGAGTGCGGGAACCCC
CATGCTTTGGCCTTCCATTGGCCCGGGCCTCGTCACCGTTGTTTTAGGATTGGTCGGCTGATGC
TCCTTTTCCCGGCCTCCCGGGGACTTCCGCTTCCGGTCCTGACGGCTGCTTCGGGTGTAACGAT
GATCGGAGACATCCTGCTGTTCGGGACGCTGCTGATGAACGCGGGGGCCGTGCTCAACTTTAAA
CTGAAGAAGAAGGACGCGCAGGGCTTCGGGGAGGAGTCGAGGGAGCCCAGCACAGGTGACAACA
TCCGGGAGTTCTTACTGAGCCTCCGATACTTTCGGATCTTCATCGCCCTTTGGAATGTCTTCAT
GATGTTCTGCATGATTGTGCTCTTTGGCTCCTGAGCCCCAGAGGCAGAACTGGAATCACCTGCC
CAGGCGTGGAGTCTGCACTTCCTGTTCCCGCTGACTTCAAGGGCGCTTTAGAGCAAACCAGCAA
GTGTCCCAGCAAGCCCCTGCTGTTGGGGGCGGAAGCTCCCAGCATGGGCTGCGTGCGCCACAGT
GACTCCCTGACCAGGAGCGGGAGCAGCTGGAGCGGCCCATCCCCTCGCGGCGGAGCCCCTCCTC
GGCCAGCCTCTTCGGGAGCCCTGCGCCCAGGTGTCCTCCCGGGTGTTCCTTGGTTTGCTTTTAA
TAACTTCCCTTTTCGTCCACATTGTGCGGATTTGCACCAATCACGGGAGGACTGGAGCAGAAGC
GTCCGCCACGAGCTTGAAGAAACCCTTTCAGGCAGCGTCTGCCAACGCGCTGCGTGACTGTTGC
GTGCTGGCTGCTGCCGGGGACAGCCCAGGGCGGCCTCCGGATCCCTCCCATCCGCCGCCCCGTG
TGCCTGGCCACTAGGTTCTACAGCTGAGGTCACCCCAGGACTTGCCGGGTTAGGCCACCTGTCA
CGAACCTGCTAGATGCCCTGCCTGGCGAGCCACTGGTTTCGAGGAGGGGAGCTCAGACAGGTGG
TGGTGGCTGGGGGGCGGTTAGAGACCTGCTTTGCGTCAAATGCCTTTGTTACATAAAGGGGCCT
TGGGGGTGCTCGACACATA

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Protein Sequences


Protein RefSeqs	XP_005415163	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000474.1

RefSeq Acc Id:	XP_005415163 ⟸ XM_005415106
- Sequence:	show sequence MLLFPASRGLPLPVLTAASGVTMIGDILLFGTLLMNAGAVLNFKLKKKDAQGFGEESREPSTGD NIREFLLSLRYFRIFIALWNVFMMFCMIVLFGS hide sequence

Ensembl Acc Id:

ENSCLAP00000000474 ⟸ ENSCLAT00000000503

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000389	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000503.1	UniProtKB/TrEMBL
InterPro	SMIM7	UniProtKB/TrEMBL
NCBI Gene	LOC102008368	ENTREZGENE
PANTHER	PTHR28622	UniProtKB/TrEMBL
	SMALL INTEGRAL MEMBRANE PROTEIN 7	UniProtKB/TrEMBL
UniProt	A0A8C2UG64_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Smim7	small integral membrane protein 7	LOC102008368	small integral membrane protein 7-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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