PHOX2A (paired like homeobox 2A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: PHOX2A (paired like homeobox 2A) Pan paniscus
Analyze
Symbol: PHOX2A
Name: paired like homeobox 2A
RGD ID: 11688292
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN locus ceruleus development (ortholog); midbrain development (ortholog); noradrenergic neuron differentiation (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); cerebral folate receptor alpha deficiency (ortholog); congenital fibrosis of the extraocular muscles 2 (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: paired mesoderm homeobox protein 2A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2973,186,167 - 73,191,264 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11174,229,581 - 74,234,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01167,317,747 - 67,322,850 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11170,542,242 - 70,546,305 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PHOX2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2973,186,167 - 73,191,264 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11174,229,581 - 74,234,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01167,317,747 - 67,322,850 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11170,542,242 - 70,546,305 (-)NCBIpanpan1.1PanPan1.1panPan2
PHOX2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,239,077 - 72,244,176 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1172,239,077 - 72,245,664 (-)EnsemblGRCh38hg38GRCh38
GRCh371171,950,121 - 71,955,220 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361171,627,769 - 71,632,852 (-)NCBINCBI36Build 36hg18NCBI36
Build 341171,627,769 - 71,632,852NCBI
Celera1169,251,525 - 69,256,623 (-)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1168,243,281 - 68,248,023 (-)NCBIHuRef
CHM1_11171,833,572 - 71,838,671 (-)NCBICHM1_1
T2T-CHM13v2.01172,165,694 - 72,170,794 (-)NCBIT2T-CHM13v2.0
Phox2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397101,467,520 - 101,471,933 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7101,467,520 - 101,471,933 (+)EnsemblGRCm39 Ensembl
GRCm387101,818,313 - 101,822,726 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,818,313 - 101,822,726 (+)EnsemblGRCm38mm10GRCm38
MGSCv377108,966,827 - 108,971,240 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367101,692,311 - 101,696,547 (+)NCBIMGSCv36mm8
Celera7102,190,059 - 102,194,443 (+)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.66NCBI
Phox2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,590,757 - 165,595,122 (+)NCBIGRCr8
mRatBN7.21156,178,754 - 156,183,118 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,178,754 - 156,183,118 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,169,073 - 164,173,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,349,162 - 171,353,527 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,226,678 - 164,231,045 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,893,734 - 166,898,252 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,893,734 - 166,898,252 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,083,448 - 173,087,966 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,273,524 - 159,312,136 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11159,352,540 - 159,356,748 (+)NCBI
Celera1154,257,374 - 154,261,739 (+)NCBICelera
RH 3.4 Map11272.9RGD
Cytogenetic Map1q32NCBI
Phox2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541419,141,589 - 19,145,486 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541419,141,589 - 19,145,486 (+)NCBIChiLan1.0ChiLan1.0
PHOX2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12125,895,628 - 25,900,338 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2125,892,321 - 25,900,351 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2125,665,337 - 25,670,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02126,104,275 - 26,108,976 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2126,104,334 - 26,108,323 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12125,895,746 - 25,900,444 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02126,111,941 - 26,116,643 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02126,013,496 - 26,018,198 (+)NCBIUU_Cfam_GSD_1.0
Phox2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494759,940,335 - 59,944,949 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364981,540,484 - 1,544,360 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364981,539,939 - 1,544,469 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHOX2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl96,807,623 - 6,812,578 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.196,808,144 - 6,831,636 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.297,570,140 - 7,586,515 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHOX2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,459,031 - 63,464,674 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,459,719 - 63,463,894 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604362,420,425 - 62,425,613 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phox2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248174,775,258 - 4,779,303 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248174,775,176 - 4,779,694 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_063608215   ⟹   XP_063464285
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2973,186,167 - 73,191,264 (-)NCBI
RefSeq Acc Id: XM_063608216   ⟹   XP_063464286
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2973,186,498 - 73,191,264 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063464285 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464286 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_063464285   ⟸   XM_063608215
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063464286   ⟸   XM_063608216
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene PHOX2A ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-07-24 PHOX2A  paired like homeobox 2A    paired like homeobox 2a  Symbol and/or name change 5135510 APPROVED