ESPN (espin) - Rat Genome Database

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Gene: ESPN (espin) Pan paniscus
Analyze
Symbol: ESPN
Name: espin
RGD ID: 11685174
Description: ENCODES a protein that exhibits actin filament binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); locomotory behavior (ortholog); microvillar actin bundle assembly (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 36 (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); brush border (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,766,953 - 221,804,885 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,409,018 - 220,446,247 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v015,184,666 - 5,222,473 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,440,951 - 6,475,253 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ESPN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,766,953 - 221,804,885 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,409,018 - 220,446,247 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v015,184,666 - 5,222,473 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,440,951 - 6,475,253 (+)NCBIpanpan1.1PanPan1.1panPan2
ESPN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,424,776 - 6,461,370 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,424,776 - 6,461,367 (+)EnsemblGRCh38hg38GRCh38
GRCh3716,484,836 - 6,521,004 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,407,435 - 6,443,591 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416,419,113 - 6,455,255NCBI
Celera15,599,359 - 5,635,452 (+)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,632,355 - 5,668,547 (+)NCBIHuRef
CHM1_116,473,408 - 6,509,542 (+)NCBICHM1_1
T2T-CHM13v2.015,950,417 - 5,987,012 (+)NCBIT2T-CHM13v2.0
Espn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,204,788 - 152,236,871 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,204,788 - 152,236,828 (-)EnsemblGRCm39 Ensembl
GRCm384152,120,331 - 152,152,414 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4152,120,331 - 152,152,371 (-)EnsemblGRCm38mm10GRCm38
MGSCv374151,494,985 - 151,526,316 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364150,964,677 - 150,996,007 (-)NCBIMGSCv36mm8
Celera4154,407,406 - 154,438,512 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map482.9NCBI
Espn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85167,909,271 - 167,943,168 (-)NCBIGRCr8
mRatBN7.25162,626,560 - 162,660,439 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,626,560 - 162,660,256 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5165,329,492 - 165,363,610 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05167,151,038 - 167,185,203 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05167,113,244 - 167,147,401 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05169,293,356 - 169,331,338 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,293,904 - 169,331,163 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05172,851,807 - 172,885,845 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,349,723 - 169,382,076 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15169,359,914 - 169,392,264 (-)NCBI
Celera5160,858,704 - 160,892,256 (-)NCBICelera
Cytogenetic Map5q36NCBI
Espn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554866,130,190 - 6,156,859 (-)NCBIChiLan1.0ChiLan1.0
ESPN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,285,185 - 60,316,261 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,285,312 - 60,315,676 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,295,201 - 60,325,841 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,501,302 - 60,531,937 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,501,302 - 60,531,352 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,500,632 - 60,531,235 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,367,399 - 60,398,004 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,768,952 - 60,799,595 (+)NCBIUU_Cfam_GSD_1.0
Espn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,735,187 - 30,764,505 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,220,593 - 1,248,993 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,220,435 - 1,249,743 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESPN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,284,079 - 67,316,591 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,284,106 - 67,316,577 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,236,643 - 62,268,608 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ESPN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,282,283 - 125,320,436 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20125,278,313 - 125,320,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605429,337,935 - 29,376,129 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Espn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248185,016,019 - 5,042,724 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248185,015,275 - 5,042,862 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_034954221   ⟹   XP_034810112
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,770,880 - 221,804,885 (-)NCBI
NHGRI_mPanPan11220,412,802 - 220,446,247 (-)NCBI
Mhudiblu_PPA_v015,184,694 - 5,218,725 (+)NCBI
RefSeq Acc Id: XM_034954231   ⟹   XP_034810122
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,770,882 - 221,790,301 (-)NCBI
NHGRI_mPanPan11220,412,802 - 220,432,385 (-)NCBI
Mhudiblu_PPA_v015,199,125 - 5,218,725 (+)NCBI
RefSeq Acc Id: XM_034954238   ⟹   XP_034810129
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,770,880 - 221,781,580 (-)NCBI
NHGRI_mPanPan11220,412,802 - 220,423,661 (-)NCBI
Mhudiblu_PPA_v015,207,846 - 5,218,725 (+)NCBI
RefSeq Acc Id: XM_034954244   ⟹   XP_034810135
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,766,953 - 221,804,885 (-)NCBI
NHGRI_mPanPan11220,409,018 - 220,446,244 (-)NCBI
Mhudiblu_PPA_v015,184,666 - 5,222,473 (+)NCBI
RefSeq Acc Id: XM_034954252   ⟹   XP_034810143
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,766,953 - 221,804,885 (-)NCBI
NHGRI_mPanPan11220,409,018 - 220,446,244 (-)NCBI
Mhudiblu_PPA_v015,184,666 - 5,222,458 (+)NCBI
RefSeq Acc Id: XM_034954260   ⟹   XP_034810151
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,766,953 - 221,804,885 (-)NCBI
NHGRI_mPanPan11220,409,018 - 220,446,244 (-)NCBI
Mhudiblu_PPA_v015,184,666 - 5,222,458 (+)NCBI
RefSeq Acc Id: XM_034954264   ⟹   XP_034810155
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,770,879 - 221,779,982 (-)NCBI
NHGRI_mPanPan11220,412,802 - 220,422,085 (-)NCBI
Mhudiblu_PPA_v015,208,789 - 5,218,725 (+)NCBI
RefSeq Acc Id: XM_034954273   ⟹   XP_034810164
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,770,874 - 221,781,685 (-)NCBI
NHGRI_mPanPan11220,412,802 - 220,423,767 (-)NCBI
Mhudiblu_PPA_v015,207,472 - 5,218,725 (+)NCBI
RefSeq Acc Id: XM_063601988   ⟹   XP_063458058
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,770,881 - 221,786,831 (-)NCBI
RefSeq Acc Id: XP_034810135   ⟸   XM_034954244
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034810143   ⟸   XM_034954252
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034810151   ⟸   XM_034954260
- Peptide Label: isoform X7
RefSeq Acc Id: XP_034810112   ⟸   XM_034954221
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034810122   ⟸   XM_034954231
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034810164   ⟸   XM_034954273
- Peptide Label: isoform X9
RefSeq Acc Id: XP_034810129   ⟸   XM_034954238
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034810155   ⟸   XM_034954264
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063458058   ⟸   XM_063601988
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene ESPN ENTREZGENE