SLC52A2 (solute carrier family 52 member 2)

Advanced Search (OLGA)

Gene: SLC52A2 (solute carrier family 52 member 2) Pan paniscus

Analyze

Symbol:

SLC52A2

Name:

solute carrier family 52 member 2

RGD ID:

11680858

Description:

ENCODES a protein that exhibits 4-hydroxybutyrate receptor activity (inferred); riboflavin transmembrane transporter activity (inferred); INVOLVED IN flavin adenine dinucleotide biosynthetic process (ortholog); riboflavin metabolic process (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 9 (ortholog); Brown-Vialetto-Van Laere syndrome (ortholog); Brown-Vialetto-Van Laere syndrome 1 (ortholog); FOUND IN plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

solute carrier family 52, riboflavin transporter, member 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	161,845,591 - 161,848,480 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	137,375,495 - 137,378,378 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	141,122,292 - 141,124,985 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	144,111,766 - 144,114,392 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	144,112,498 - 144,114,319 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive nonsyndromic deafness 9 (ISO)

Brown-Vialetto-Van Laere syndrome (ISO)

Brown-Vialetto-Van Laere syndrome 1 (ISO)

Brown-Vialetto-Van Laere syndrome 2 (ISO)

epidermolysis bullosa simplex with muscular dystrophy (ISO)

genetic disease (ISO)

holoprosencephaly (ISO)

sensorineural hearing loss (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

flavin adenine dinucleotide biosynthetic process (ISO)

riboflavin metabolic process (ISO)

riboflavin transport (IEA)

Cellular Component

plasma membrane (IEA,ISO)

Molecular Function

4-hydroxybutyrate receptor activity (IEA)

protein binding (ISO)

riboflavin transmembrane transporter activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SLC52A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	161,845,591 - 161,848,480 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	137,375,495 - 137,378,378 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	141,122,292 - 141,124,985 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	144,111,766 - 144,114,392 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	144,112,498 - 144,114,319 (+)	Ensembl	panpan1.1		panPan2

SLC52A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	144,358,552 - 144,361,272 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	144,333,957 - 144,361,286 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	145,582,212 - 145,584,932 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	145,553,033 - 145,555,753 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	145,553,032 - 145,555,754	NCBI
Celera	8	141,757,606 - 141,760,327 (+)	NCBI		Celera
Cytogenetic Map	8	q24.3	NCBI
HuRef	8	140,696,155 - 140,698,884 (+)	NCBI		HuRef
CHM1_1	8	145,620,638 - 145,623,367 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	145,527,181 - 145,529,901 (+)	NCBI		T2T-CHM13v2.0

Slc52a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	76,422,994 - 76,432,078 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	76,423,032 - 76,428,808 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	76,538,814 - 76,547,878 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	76,538,832 - 76,544,608 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	76,369,373 - 76,372,560 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	76,366,198 - 76,369,385 (+)	NCBI		MGSCv36	mm8
Celera	15	78,039,389 - 78,042,576 (+)	NCBI		Celera
Cytogenetic Map	15	D3	NCBI
cM Map	15	36.04	NCBI

Slc52a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	110,126,632 - 110,146,647 (+)	NCBI		GRCr8
mRatBN7.2	7	108,246,003 - 108,267,642 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	108,262,612 - 108,268,034 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	110,006,876 - 110,010,278 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	112,230,573 - 112,233,981 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	112,189,020 - 112,192,430 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	117,605,038 - 117,608,460 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	117,605,050 - 117,608,460 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	117,575,356 - 117,596,091 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	114,590,752 - 114,594,162 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	104,613,931 - 104,617,341 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Slc52a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	2,979,889 - 2,982,203 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	2,944,169 - 2,982,203 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC52A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	37,779,896 - 37,786,653 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	37,783,562 - 37,786,621 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	37,742,477 - 37,749,280 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	38,255,411 - 38,262,214 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	38,255,350 - 38,262,219 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	37,947,241 - 37,954,043 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	38,055,893 - 38,062,696 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	38,532,243 - 38,539,046 (+)	NCBI		UU_Cfam_GSD_1.0

Slc52a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	460,080 - 462,494 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	7,881,890 - 7,888,592 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	7,886,169 - 7,888,592 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC52A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	421,474 - 424,384 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	421,457 - 429,360 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	509,904 - 517,521 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC52A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	138,570,451 - 138,573,072 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	138,571,081 - 138,573,079 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	1,287,635 - 1,290,261 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc52a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	12,486,016 - 12,491,331 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	12,465,032 - 12,491,809 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003819423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003819424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008972738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008972739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063607005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000054525 ⟹ ENSPPAP00000031660

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	8	144,112,498 - 144,114,319 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000054537 ⟹ ENSPPAP00000031672

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	8	144,112,498 - 144,114,121 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000054547 ⟹ ENSPPAP00000031682

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	8	144,112,498 - 144,114,121 (+)	Ensembl

RefSeq Acc Id:

XM_003819423 ⟹ XP_003819471

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	7	161,845,866 - 161,848,480 (+)	NCBI
NHGRI_mPanPan1	8	137,376,128 - 137,378,378 (+)	NCBI
Mhudiblu_PPA_v0	8	141,122,420 - 141,124,985 (+)	NCBI
PanPan1.1	8	144,111,773 - 144,114,381 (+)	NCBI

Sequence:

show sequence

CGGTCGCGGGCCATGCCGGGGGCGGGCCCGGAGCCGCCACGGGTGAGTCGGGTCGTGGCTGCTG
CCGGGTCCTGCGCGCTCTGGACTGAGGTGGCGTCCCTGGGCCGGACGGCGGTGTCCTGGCGTGG
CGGGAAGCCGGCACTGGAGCGGGAGCGCACTGGGCGCGGGACCGGGAGGCGCAGGGACCGGACG
GCTCCCGAGTCGCCCACCTGACAGTACCGAGAGGGCGGCGCCCCTCCGAGCAGAGCCGTCCCGG
CCACTCCCCTGGGATCTGACTTGGCTCTTGCGGTCGCGGGCACCGTGAAGCCCTGGGGTGTGCG
TGGCTCCTCCTGGTAGACGCCCTTTCCCGGCGTCCGGCTTGGGGTGGTGGTGGCGTTGACTCCA
GCCCCGCCTCTCCCTGGAGAGGAGGGCTCCACTCGCTCCTTCGGCCTCCTCCCCTGGGGCCGCA
GCGACTCGGGCCGGCTTCCTGCTTCCCTGCCTGCCGGCGGTCCCGCTGGCTAGAAGAGGTCTTC
AGTTCCCAGGAGAGCCAAAGCGTGTCTGGCCCTAGGTGGGAAAAGAACTGGCTGTGACCTTTGC
CCTGACCTGGAAGGGCCCAGCCTTGGGCTGAATGGCAGCACCCACGCCCGCCCGTCCGGTGCTG
ACCCACCTGCTGGTGGCTCTCTTCGGCATGGGCTCCTGGGCTGCGGTCAATGGGATCTGGGTGG
AGCTACCTGTGGTGGTCAAAGAGCTTCCAGAGGGTTGGAGCCTCCCCTCTTACGTCTCTGTGCT
TGTGGCTCTGGGGAACCTGGGTCTGCTGGTGGTGACCCTCTGGAGGAGGCTGGCCCCAGGAAAG
GACGAGCAGGTCCCCATCCGGGTGGTGCAGGTGCTGGGCATGGTGGGCACAGCCCTGCTGGCCT
CTCTGTGGCACCATGTGGCCCCAGTGGCAGGACAGTTGCATTCTGTGGCCTTCTTAGCACTGGC
CTTTGTGCTGGCACTGGCATGCTGTGCCTCGAATGTCACTTTCCTGCCCTTCTTGAGCCACCTG
CCACCTCGCTTCTTACGGTCATTCTTCCTGGGTCAAGGCCTGAGTGCCCTGCTGCCCTGCGTGC
TGGCCCTAGTGCAGGGTGTGGGCCGCCGCGAGTGCCCGCCAGCCCCCATCAACGGCACCCCTGG
CCCCCCGCTCGACTTCCTTGAGCGTTTTCCCGCCAGCACCTTCTTCTGGGCACTGACTGCCCTT
CTGGTCACTTCAGCTGCTGCCTTCCAGGGTCTTCTGCTGCTGTTGCCGCCACCACCATCTGTAC
CCACAGGGGAGTTAGTATCAGGCCTCCAGGTGGGAGCCCCAGGAGCAGAGGAAGAGGTGGAAGA
GTCCTCACCACTGCAAGAGCCACCAAGCCAGGCAGCAGGCACCACCCCTGGTCCAGACCCTAAG
GCCTATCAGCTTCTCTCAGCCCGCAGTGCCTGCCTGCTGGGCCTGTTGGCCGCCACCAACGCGC
TGACCAACGGCGTGCTGCCTGCCGTGCAGAGCTTTTCCTGCTTACCCTACGGGCATCTGGCCTA
CCACCTGGCTGTGGTGCTGGGCAGTGCTGCCAATCCCCTGGCCTGCTTCCTGGCCATGGGTGTG
CTGTGCAGGTCCTTGGCAGGGCTGGGCGGCCTCTCTCTGCTGGGCGTGCTCTGTGGGGGCTACC
TGATGGCGCTGGCAGTCCTGAGCCCCTGCCCGCCCCTGGTGGGCACCTCGGCAGGGGTGGTCCT
CGTGGTGCTGTCGTGGGTGCTGTGTCTTGGCGTGTTCTCCTACGTGAAGGTGGCAGCCAGCTCC
CTGCTGCATGGCGGGGGCCGGCCGGCATTGCTGGCAGCCGGCGTGGCCATCCAGGTGGGCTCTC
TGCTCGGCGCTGTTGCTATGTTCCCCCCGACCAGCATCTATCACGTGTTCCACAGCAGAAAGGA
CTGTGCAGACCCCTGTGACTCCTGAGCCTGGGCAGGTGGGGACCCCGCTCCCCAACACCTGTCT
TTCCCTCAATGCTGCCACCATGCCTGAGTGCCTGCAGCCCAGGAGGCCCGCGCACCGGTACACT
CGTGGACACCTACGTACTCCATAGGAGATCCTGGCTCTCCAGGGCGGGCAAGGGCAAGGAGCAG
GCTTGGAGCCAGGGACCAGTGGGGGCTGTAGGGTAAGCCCCTGAGCCTGGGACCTACATGTGGT
TTGCGTAATAAAACATTTTTATTTAATGA

hide sequence

RefSeq Acc Id:

XM_003819424 ⟹ XP_003819472

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	7	161,845,591 - 161,848,480 (+)	NCBI
NHGRI_mPanPan1	8	137,375,688 - 137,378,378 (+)	NCBI
Mhudiblu_PPA_v0	8	141,122,292 - 141,124,985 (+)	NCBI
PanPan1.1	8	144,111,766 - 144,114,392 (+)	NCBI

Sequence:

show sequence

GGACTTCCGGTCGCGGGCCATGCCGGGGGCGGGCCCGGAGCCGCCACGGCTAGAAGAGGTCTTC
AGTTCCCAGGAGAGCCAAAGCGTGTCTGGCCCTAGGTGGGAAAAGAACTGGCTGTGACCTTTGC
CCTGACCTGGAAGGGCCCAGCCTTGGGCTGAATGGCAGCACCCACGCCCGCCCGTCCGGTGCTG
ACCCACCTGCTGGTGGCTCTCTTCGGCATGGGCTCCTGGGCTGCGGTCAATGGGATCTGGGTGG
AGCTACCTGTGGTGGTCAAAGAGCTTCCAGAGGGTTGGAGCCTCCCCTCTTACGTCTCTGTGCT
TGTGGCTCTGGGGAACCTGGGTCTGCTGGTGGTGACCCTCTGGAGGAGGCTGGCCCCAGGAAAG
GACGAGCAGGTCCCCATCCGGGTGGTGCAGGTGCTGGGCATGGTGGGCACAGCCCTGCTGGCCT
CTCTGTGGCACCATGTGGCCCCAGTGGCAGGACAGTTGCATTCTGTGGCCTTCTTAGCACTGGC
CTTTGTGCTGGCACTGGCATGCTGTGCCTCGAATGTCACTTTCCTGCCCTTCTTGAGCCACCTG
CCACCTCGCTTCTTACGGTCATTCTTCCTGGGTCAAGGCCTGAGTGCCCTGCTGCCCTGCGTGC
TGGCCCTAGTGCAGGGTGTGGGCCGCCGCGAGTGCCCGCCAGCCCCCATCAACGGCACCCCTGG
CCCCCCGCTCGACTTCCTTGAGCGTTTTCCCGCCAGCACCTTCTTCTGGGCACTGACTGCCCTT
CTGGTCACTTCAGCTGCTGCCTTCCAGGGTCTTCTGCTGCTGTTGCCGCCACCACCATCTGTAC
CCACAGGGGAGTTAGTATCAGGCCTCCAGGTGGGAGCCCCAGGAGCAGAGGAAGAGGTGGAAGA
GTCCTCACCACTGCAAGAGCCACCAAGCCAGGCAGCAGGCACCACCCCTGGTCCAGACCCTAAG
GCCTATCAGCTTCTCTCAGCCCGCAGTGCCTGCCTGCTGGGCCTGTTGGCCGCCACCAACGCGC
TGACCAACGGCGTGCTGCCTGCCGTGCAGAGCTTTTCCTGCTTACCCTACGGGCATCTGGCCTA
CCACCTGGCTGTGGTGCTGGGCAGTGCTGCCAATCCCCTGGCCTGCTTCCTGGCCATGGGTGTG
CTGTGCAGGTCCTTGGCAGGGCTGGGCGGCCTCTCTCTGCTGGGCGTGCTCTGTGGGGGCTACC
TGATGGCGCTGGCAGTCCTGAGCCCCTGCCCGCCCCTGGTGGGCACCTCGGCAGGGGTGGTCCT
CGTGGTGCTGTCGTGGGTGCTGTGTCTTGGCGTGTTCTCCTACGTGAAGGTGGCAGCCAGCTCC
CTGCTGCATGGCGGGGGCCGGCCGGCATTGCTGGCAGCCGGCGTGGCCATCCAGGTGGGCTCTC
TGCTCGGCGCTGTTGCTATGTTCCCCCCGACCAGCATCTATCACGTGTTCCACAGCAGAAAGGA
CTGTGCAGACCCCTGTGACTCCTGAGCCTGGGCAGGTGGGGACCCCGCTCCCCAACACCTGTCT
TTCCCTCAATGCTGCCACCATGCCTGAGTGCCTGCAGCCCAGGAGGCCCGCGCACCGGTACACT
CGTGGACACCTACGTACTCCATAGGAGATCCTGGCTCTCCAGGGCGGGCAAGGGCAAGGAGCAG
GCTTGGAGCCAGGGACCAGTGGGGGCTGTAGGGTAAGCCCCTGAGCCTGGGACCTACATGTGGT
TTGCGTAATAAAACATTTTTATTTAATGAGTTGGCATTAA

hide sequence

RefSeq Acc Id:

XM_008972738 ⟹ XP_008970986

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	7	161,845,866 - 161,848,480 (+)	NCBI
NHGRI_mPanPan1	8	137,375,816 - 137,378,378 (+)	NCBI
Mhudiblu_PPA_v0	8	141,122,420 - 141,124,985 (+)	NCBI
PanPan1.1	8	144,111,773 - 144,114,381 (+)	NCBI

Sequence:

show sequence

CGGTCGCGGGCCATGCCGGGGGCGGGCCCGGAGCCGCCACGGGTGAGTCGGGTCGTGGCTGCTG
CCGGGTCCTGCGCGCTCTGGACTGAGGTGGCGTCCCTGGGCCGGACGGCGGTGTCCTGGCGTGG
CGGGAAGCCGGCACTGGAGCGGGAGCGCACTGGGCGCGGGACCGGGAGGCGCAGGGACCGGACG
GCTCCCGAGTCGCCCACCTGACAGTACCGAGAGGGCGGCGCCCCTCCGAGCAGAGCCGTCCCGG
CCACTCCCCTGGGATCTGACTTGGCTCTTGCGGTCGCGGGCACCGTGAAGCCCTGGGGTGTGCG
TGGCTCCTCCTGGTAGACGCCCTTTCCCGGCGTCCGGCTTGGGGTGGTGGTGGCGTTGACTCCA
GCCCCGCCTCTCCCTGGAGAGGAGGGCTCCACTCGCTCCTTCGGCCTCCTCCCCTGGGGCCGCA
GCGACTCGGGCCGGCTTCCTGCTTCCCTGCCTGCCGGCGGTCCCGCTGGAAGAGGTCTTCAGTT
CCCAGGAGAGCCAAAGCGTGTCTGGCCCTAGGTGGGAAAAGAACTGGCTGTGACCTTTGCCCTG
ACCTGGAAGGGCCCAGCCTTGGGCTGAATGGCAGCACCCACGCCCGCCCGTCCGGTGCTGACCC
ACCTGCTGGTGGCTCTCTTCGGCATGGGCTCCTGGGCTGCGGTCAATGGGATCTGGGTGGAGCT
ACCTGTGGTGGTCAAAGAGCTTCCAGAGGGTTGGAGCCTCCCCTCTTACGTCTCTGTGCTTGTG
GCTCTGGGGAACCTGGGTCTGCTGGTGGTGACCCTCTGGAGGAGGCTGGCCCCAGGAAAGGACG
AGCAGGTCCCCATCCGGGTGGTGCAGGTGCTGGGCATGGTGGGCACAGCCCTGCTGGCCTCTCT
GTGGCACCATGTGGCCCCAGTGGCAGGACAGTTGCATTCTGTGGCCTTCTTAGCACTGGCCTTT
GTGCTGGCACTGGCATGCTGTGCCTCGAATGTCACTTTCCTGCCCTTCTTGAGCCACCTGCCAC
CTCGCTTCTTACGGTCATTCTTCCTGGGTCAAGGCCTGAGTGCCCTGCTGCCCTGCGTGCTGGC
CCTAGTGCAGGGTGTGGGCCGCCGCGAGTGCCCGCCAGCCCCCATCAACGGCACCCCTGGCCCC
CCGCTCGACTTCCTTGAGCGTTTTCCCGCCAGCACCTTCTTCTGGGCACTGACTGCCCTTCTGG
TCACTTCAGCTGCTGCCTTCCAGGGTCTTCTGCTGCTGTTGCCGCCACCACCATCTGTACCCAC
AGGGGAGTTAGTATCAGGCCTCCAGGTGGGAGCCCCAGGAGCAGAGGAAGAGGTGGAAGAGTCC
TCACCACTGCAAGAGCCACCAAGCCAGGCAGCAGGCACCACCCCTGGTCCAGACCCTAAGGCCT
ATCAGCTTCTCTCAGCCCGCAGTGCCTGCCTGCTGGGCCTGTTGGCCGCCACCAACGCGCTGAC
CAACGGCGTGCTGCCTGCCGTGCAGAGCTTTTCCTGCTTACCCTACGGGCATCTGGCCTACCAC
CTGGCTGTGGTGCTGGGCAGTGCTGCCAATCCCCTGGCCTGCTTCCTGGCCATGGGTGTGCTGT
GCAGGTCCTTGGCAGGGCTGGGCGGCCTCTCTCTGCTGGGCGTGCTCTGTGGGGGCTACCTGAT
GGCGCTGGCAGTCCTGAGCCCCTGCCCGCCCCTGGTGGGCACCTCGGCAGGGGTGGTCCTCGTG
GTGCTGTCGTGGGTGCTGTGTCTTGGCGTGTTCTCCTACGTGAAGGTGGCAGCCAGCTCCCTGC
TGCATGGCGGGGGCCGGCCGGCATTGCTGGCAGCCGGCGTGGCCATCCAGGTGGGCTCTCTGCT
CGGCGCTGTTGCTATGTTCCCCCCGACCAGCATCTATCACGTGTTCCACAGCAGAAAGGACTGT
GCAGACCCCTGTGACTCCTGAGCCTGGGCAGGTGGGGACCCCGCTCCCCAACACCTGTCTTTCC
CTCAATGCTGCCACCATGCCTGAGTGCCTGCAGCCCAGGAGGCCCGCGCACCGGTACACTCGTG
GACACCTACGTACTCCATAGGAGATCCTGGCTCTCCAGGGCGGGCAAGGGCAAGGAGCAGGCTT
GGAGCCAGGGACCAGTGGGGGCTGTAGGGTAAGCCCCTGAGCCTGGGACCTACATGTGGTTTGC
GTAATAAAACATTTTTATTTAATGA

hide sequence

RefSeq Acc Id:

XM_008972739 ⟹ XP_008970987

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	7	161,845,597 - 161,848,480 (+)	NCBI
NHGRI_mPanPan1	8	137,375,495 - 137,378,378 (+)	NCBI
Mhudiblu_PPA_v0	8	141,122,385 - 141,124,985 (+)	NCBI
PanPan1.1	8	144,111,796 - 144,114,381 (+)	NCBI

Sequence:

show sequence

GGGCCCGGAGCCGCCACGGAAGAGGTCTTCAGTTCCCAGGAGAGCCAAAGCGTGTCTGGCCCTA
GGTGGGAAAAGAACTGGCTGTGACCTTTGCCCTGACCTGGAAGGGCCCAGCCTTGGGCTGAATG
GCAGCACCCACGCCCGCCCGTCCGGTGCTGACCCACCTGCTGGTGGCTCTCTTCGGCATGGGCT
CCTGGGCTGCGGTCAATGGGATCTGGGTGGAGCTACCTGTGGTGGTCAAAGAGCTTCCAGAGGG
TTGGAGCCTCCCCTCTTACGTCTCTGTGCTTGTGGCTCTGGGGAACCTGGGTCTGCTGGTGGTG
ACCCTCTGGAGGAGGCTGGCCCCAGGAAAGGACGAGCAGGTCCCCATCCGGGTGGTGCAGGTGC
TGGGCATGGTGGGCACAGCCCTGCTGGCCTCTCTGTGGCACCATGTGGCCCCAGTGGCAGGACA
GTTGCATTCTGTGGCCTTCTTAGCACTGGCCTTTGTGCTGGCACTGGCATGCTGTGCCTCGAAT
GTCACTTTCCTGCCCTTCTTGAGCCACCTGCCACCTCGCTTCTTACGGTCATTCTTCCTGGGTC
AAGGCCTGAGTGCCCTGCTGCCCTGCGTGCTGGCCCTAGTGCAGGGTGTGGGCCGCCGCGAGTG
CCCGCCAGCCCCCATCAACGGCACCCCTGGCCCCCCGCTCGACTTCCTTGAGCGTTTTCCCGCC
AGCACCTTCTTCTGGGCACTGACTGCCCTTCTGGTCACTTCAGCTGCTGCCTTCCAGGGTCTTC
TGCTGCTGTTGCCGCCACCACCATCTGTACCCACAGGGGAGTTAGTATCAGGCCTCCAGGTGGG
AGCCCCAGGAGCAGAGGAAGAGGTGGAAGAGTCCTCACCACTGCAAGAGCCACCAAGCCAGGCA
GCAGGCACCACCCCTGGTCCAGACCCTAAGGCCTATCAGCTTCTCTCAGCCCGCAGTGCCTGCC
TGCTGGGCCTGTTGGCCGCCACCAACGCGCTGACCAACGGCGTGCTGCCTGCCGTGCAGAGCTT
TTCCTGCTTACCCTACGGGCATCTGGCCTACCACCTGGCTGTGGTGCTGGGCAGTGCTGCCAAT
CCCCTGGCCTGCTTCCTGGCCATGGGTGTGCTGTGCAGGTCCTTGGCAGGGCTGGGCGGCCTCT
CTCTGCTGGGCGTGCTCTGTGGGGGCTACCTGATGGCGCTGGCAGTCCTGAGCCCCTGCCCGCC
CCTGGTGGGCACCTCGGCAGGGGTGGTCCTCGTGGTGCTGTCGTGGGTGCTGTGTCTTGGCGTG
TTCTCCTACGTGAAGGTGGCAGCCAGCTCCCTGCTGCATGGCGGGGGCCGGCCGGCATTGCTGG
CAGCCGGCGTGGCCATCCAGGTGGGCTCTCTGCTCGGCGCTGTTGCTATGTTCCCCCCGACCAG
CATCTATCACGTGTTCCACAGCAGAAAGGACTGTGCAGACCCCTGTGACTCCTGAGCCTGGGCA
GGTGGGGACCCCGCTCCCCAACACCTGTCTTTCCCTCAATGCTGCCACCATGCCTGAGTGCCTG
CAGCCCAGGAGGCCCGCGCACCGGTACACTCGTGGACACCTACGTACTCCATAGGAGATCCTGG
CTCTCCAGGGCGGGCAAGGGCAAGGAGCAGGCTTGGAGCCAGGGACCAGTGGGGGCTGTAGGGT
AAGCCCCTGAGCCTGGGACCTACATGTGGTTTGCGTAATAAAACATTTTTATTTAATGA

hide sequence

RefSeq Acc Id:

XM_063607005 ⟹ XP_063463075

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	7	161,845,790 - 161,848,480 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003819471	(Get FASTA)	NCBI Sequence Viewer
	XP_003819472	(Get FASTA)	NCBI Sequence Viewer
	XP_008970986	(Get FASTA)	NCBI Sequence Viewer
	XP_008970987	(Get FASTA)	NCBI Sequence Viewer
	XP_063463075	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000031660.1
	ENSPPAP00000031672.1
	ENSPPAP00000031682
	ENSPPAP00000031682.1

RefSeq Acc Id:	XP_003819472 ⟸ XM_003819424
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BYT8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNLGLLV VTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFVLALACCAS NVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRRECPPAPINGTPGPPLDFLERFP ASTFFWALTALLVTSAAAFQGLLLLLPPPPSVPTGELVSGLQVGAPGAEEEVEESSPLQEPPSQ AAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSFSCLPYGHLAYHLAVVLGSAA NPLACFLAMGVLCRSLAGLGGLSLLGVLCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVLCLG VFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYHVFHSRKDCADPCDS hide sequence

RefSeq Acc Id:	XP_003819471 ⟸ XM_003819423
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BYT8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNLGLLV VTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFVLALACCAS NVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRRECPPAPINGTPGPPLDFLERFP ASTFFWALTALLVTSAAAFQGLLLLLPPPPSVPTGELVSGLQVGAPGAEEEVEESSPLQEPPSQ AAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSFSCLPYGHLAYHLAVVLGSAA NPLACFLAMGVLCRSLAGLGGLSLLGVLCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVLCLG VFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYHVFHSRKDCADPCDS hide sequence

RefSeq Acc Id:	XP_008970986 ⟸ XM_008972738
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BYT8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNLGLLV VTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFVLALACCAS NVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRRECPPAPINGTPGPPLDFLERFP ASTFFWALTALLVTSAAAFQGLLLLLPPPPSVPTGELVSGLQVGAPGAEEEVEESSPLQEPPSQ AAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSFSCLPYGHLAYHLAVVLGSAA NPLACFLAMGVLCRSLAGLGGLSLLGVLCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVLCLG VFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYHVFHSRKDCADPCDS hide sequence

RefSeq Acc Id:	XP_008970987 ⟸ XM_008972739
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BYT8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNLGLLV VTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFVLALACCAS NVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRRECPPAPINGTPGPPLDFLERFP ASTFFWALTALLVTSAAAFQGLLLLLPPPPSVPTGELVSGLQVGAPGAEEEVEESSPLQEPPSQ AAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSFSCLPYGHLAYHLAVVLGSAA NPLACFLAMGVLCRSLAGLGGLSLLGVLCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVLCLG VFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYHVFHSRKDCADPCDS hide sequence

Ensembl Acc Id:

ENSPPAP00000031660 ⟸ ENSPPAT00000054525

Ensembl Acc Id:

ENSPPAP00000031672 ⟸ ENSPPAT00000054537

Ensembl Acc Id:

ENSPPAP00000031682 ⟸ ENSPPAT00000054547

RefSeq Acc Id:	XP_063463075 ⟸ XM_063607005
- Peptide Label:	isoform X1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000038746	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000054525.1	UniProtKB/TrEMBL
	ENSPPAT00000054537.1	UniProtKB/TrEMBL
	ENSPPAT00000054547.1	UniProtKB/TrEMBL
InterPro	Riboflavin_transptr	UniProtKB/TrEMBL
NCBI Gene	SLC52A2	ENTREZGENE
PANTHER	PTHR12929	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 52, RIBOFLAVIN TRANSPORTER, MEMBER 2	UniProtKB/TrEMBL
Pfam	DUF1011	UniProtKB/TrEMBL
UniProt	A0A2R9BPR3_PANPA	UniProtKB/TrEMBL
	A0A2R9BYT8	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BYW1_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM