Pigr (polymeric immunoglobulin receptor) - Rat Genome Database

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Gene: Pigr (polymeric immunoglobulin receptor) Mus musculus
Analyze
Symbol: Pigr
Name: polymeric immunoglobulin receptor
RGD ID: 11102
MGI Page MGI
Description: Predicted to enable epidermal growth factor receptor binding activity; polymeric immunoglobulin binding activity; and polymeric immunoglobulin receptor activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; detection of chemical stimulus involved in sensory perception of bitter taste; and immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor. Predicted to be located in extracellular space and recycling endosome membrane. Predicted to be part of receptor complex and secretory IgA immunoglobulin complex. Predicted to be active in plasma membrane. Is expressed in large intestine and small intestine. Orthologous to human PIGR (polymeric immunoglobulin receptor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: phosphatidylinositol glycan, class R; poly-Ig receptor
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,754,421 - 130,779,986 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1130,754,421 - 130,779,986 (+)EnsemblGRCm39 Ensembl
GRCm381130,826,684 - 130,852,249 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,826,684 - 130,852,249 (+)EnsemblGRCm38mm10GRCm38
MGSCv371132,723,261 - 132,748,826 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,654,297 - 132,679,517 (+)NCBIMGSCv36mm8
Celera1133,449,991 - 133,475,626 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
alendronic acid  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chromium(6+)  (EXP)
chrysene  (EXP)
cyclophosphamide  (EXP)
cyclosporin A  (EXP)
dibenzofurans  (EXP)
dichloroacetic acid  (EXP)
diethylstilbestrol  (EXP)
diuron  (ISO)
fumonisin B1  (EXP)
furan  (ISO)
gamma-hexachlorocyclohexane  (ISO)
genistein  (EXP)
inulin  (EXP)
lithium chloride  (EXP)
methylmercury chloride  (EXP)
microcystin-LR  (EXP)
N-nitrosodiethylamine  (EXP)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
permethrin  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (EXP)
raloxifene  (ISO)
resveratrol  (ISO)
senecionine  (EXP)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sulforaphane  (EXP)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
troglitazone  (EXP)
valproic acid  (EXP,ISO)
zinc atom  (EXP)
zinc(0)  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7836758   PMID:9409786   PMID:9434194   PMID:9756509   PMID:9880925   PMID:10349636   PMID:10446232   PMID:10481312   PMID:10510081   PMID:10553061   PMID:11042159   PMID:11076861  
PMID:11376148   PMID:11489951   PMID:11592708   PMID:11884464   PMID:12165516   PMID:12477932   PMID:12594279   PMID:15155635   PMID:15383591   PMID:15770700   PMID:16002732   PMID:16141072  
PMID:16141073   PMID:16390940   PMID:16569672   PMID:16602821   PMID:16911679   PMID:17056558   PMID:17255112   PMID:18171724   PMID:18209057   PMID:18803626   PMID:19017981   PMID:19404246  
PMID:19451240   PMID:20421480   PMID:20709955   PMID:20844578   PMID:21037565   PMID:21873635   PMID:21967771   PMID:22865203   PMID:23103862   PMID:23382219   PMID:23918779   PMID:24191297  
PMID:24457600   PMID:24569806   PMID:24827556   PMID:24841255   PMID:25437806   PMID:25686606   PMID:25835383   PMID:25894545   PMID:25922073   PMID:25967857   PMID:27046438   PMID:28378742  
PMID:28515075   PMID:29144460   PMID:29314863   PMID:29856838   PMID:29991584   PMID:30232191   PMID:30686564   PMID:30819965   PMID:32625195   PMID:34289371   PMID:34825965   PMID:35493520  
PMID:36690432   PMID:36709322   PMID:37130522   PMID:37488116  


Genomics

Comparative Map Data
Pigr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,754,421 - 130,779,986 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1130,754,421 - 130,779,986 (+)EnsemblGRCm39 Ensembl
GRCm381130,826,684 - 130,852,249 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,826,684 - 130,852,249 (+)EnsemblGRCm38mm10GRCm38
MGSCv371132,723,261 - 132,748,826 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,654,297 - 132,679,517 (+)NCBIMGSCv36mm8
Celera1133,449,991 - 133,475,626 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.89NCBI
PIGR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,928,522 - 206,946,466 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,928,522 - 206,946,466 (-)EnsemblGRCh38hg38GRCh38
GRCh371207,101,867 - 207,119,811 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361205,168,495 - 205,186,430 (-)NCBINCBI36Build 36hg18NCBI36
Build 341203,490,266 - 203,508,202NCBI
Celera1180,353,371 - 180,371,315 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,799,244 - 177,817,184 (-)NCBIHuRef
CHM1_11208,374,492 - 208,392,432 (-)NCBICHM1_1
T2T-CHM13v2.01206,193,722 - 206,211,683 (-)NCBIT2T-CHM13v2.0
Pigr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81344,851,001 - 44,879,143 (+)NCBIGRCr8
mRatBN7.21342,298,905 - 42,326,877 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1342,298,914 - 42,326,875 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1344,905,434 - 44,933,393 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01346,193,574 - 46,221,520 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01343,448,444 - 43,476,614 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01347,564,176 - 47,592,093 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1347,572,219 - 47,591,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01352,652,970 - 52,680,757 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41343,785,845 - 43,819,331 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11343,799,887 - 43,817,079 (+)NCBI
Celera1342,648,461 - 42,676,340 (+)NCBICelera
Cytogenetic Map13q13NCBI
Pigr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540642,453,080 - 42,474,694 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540642,456,450 - 42,474,489 (-)NCBIChiLan1.0ChiLan1.0
PIGR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2142,427,196 - 42,446,081 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1142,393,143 - 42,411,960 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01182,532,773 - 182,550,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,811,152 - 186,829,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,811,152 - 186,829,793 (-)Ensemblpanpan1.1panPan2
PIGR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,070,407 - 6,087,605 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl76,070,407 - 6,087,605 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha75,633,951 - 5,651,108 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.075,759,271 - 5,776,498 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl75,759,271 - 5,776,498 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.175,693,647 - 5,710,805 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.075,794,690 - 5,811,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.075,834,667 - 5,851,875 (-)NCBIUU_Cfam_GSD_1.0
Pigr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,450,662 - 68,461,563 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365575,690,944 - 5,700,738 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365575,690,895 - 5,701,822 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl967,553,099 - 67,574,668 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1967,553,094 - 67,574,698 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2973,889,670 - 73,897,726 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,409,723 - 22,427,894 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2522,409,999 - 22,427,949 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,079,829 - 23,092,158 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248074,545,481 - 4,563,357 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248074,545,508 - 4,562,976 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:786
Count of miRNA genes:435
Interacting mature miRNAs:508
Transcripts:ENSMUST00000027675, ENSMUST00000133792, ENSMUST00000137782
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121727729139727738Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
1301753Tir3a_mtrypansomiasis infection response 3a (mouse)Not determined197053986131054190Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199507660133507845Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse

Markers in Region
AB001489  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381130,848,054 - 130,848,199UniSTSGRCm38
MGSCv371132,744,631 - 132,744,776UniSTSGRCm37
Celera1133,471,362 - 133,471,507UniSTS
Cytogenetic Map1E3UniSTS
cM Map168.2UniSTS
Whitehead/MRC_RH11730.22UniSTS
U06431  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1E3UniSTS
cM Map168.2UniSTS
Whitehead_YAC1 UniSTS
PMC55698P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381130,844,429 - 130,844,843UniSTSGRCm38
MGSCv371132,741,006 - 132,741,420UniSTSGRCm37
Celera1133,467,737 - 133,468,151UniSTS
Cytogenetic Map1E3UniSTS
cM Map168.2UniSTS
Pigr  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381130,834,684 - 130,834,789UniSTSGRCm38
MGSCv371132,731,261 - 132,731,366UniSTSGRCm37
Celera1133,457,992 - 133,458,097UniSTS
Cytogenetic Map1E3UniSTS
cM Map168.2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB001489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC165322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF261084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH006798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U06431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000027675   ⟹   ENSMUSP00000027675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,754,421 - 130,779,986 (+)Ensembl
GRCm38.p6 Ensembl1130,826,684 - 130,852,249 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133792   ⟹   ENSMUSP00000121686
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,754,625 - 130,772,417 (+)Ensembl
GRCm38.p6 Ensembl1130,826,888 - 130,844,680 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137782   ⟹   ENSMUSP00000114334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,756,747 - 130,772,385 (+)Ensembl
GRCm38.p6 Ensembl1130,829,010 - 130,844,648 (+)Ensembl
RefSeq Acc Id: NM_011082   ⟹   NP_035212
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391130,754,421 - 130,779,986 (+)NCBI
GRCm381130,826,684 - 130,852,249 (+)ENTREZGENE
MGSCv371132,723,261 - 132,748,826 (+)RGD
Celera1133,449,991 - 133,475,626 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035212   ⟸   NM_011082
- Peptide Label: precursor
- UniProtKB: O70570 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000027675   ⟸   ENSMUST00000027675
Ensembl Acc Id: ENSMUSP00000121686   ⟸   ENSMUST00000133792
Ensembl Acc Id: ENSMUSP00000114334   ⟸   ENSMUST00000137782
Protein Domains
Ig-like   Ig-like V-type   Immunoglobulin subtype

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70570-F1-model_v2 AlphaFold O70570 1-771 view protein structure

Promoters
RGD ID:6874836
Promoter ID:EPDNEW_M869
Type:initiation region
Name:Pigr_1
Description:Mus musculus polymeric immunoglobulin receptor , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M870  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381130,826,711 - 130,826,771EPDNEW
RGD ID:6874854
Promoter ID:EPDNEW_M870
Type:multiple initiation site
Name:Pigr_2
Description:Mus musculus polymeric immunoglobulin receptor , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M869  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381130,834,405 - 130,834,465EPDNEW
RGD ID:6818238
Promoter ID:MM_KWN:2012
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NM_011082_PIGR,   OTTMUST00000054216,   OTTMUST00000054217
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361132,723,101 - 132,723,601 (+)MPROMDB
RGD ID:6818239
Promoter ID:MM_KWN:2013
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000054218
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361132,725,201 - 132,725,701 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:103080 AgrOrtholog
Ensembl Genes ENSMUSG00000026417 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027675 ENTREZGENE
  ENSMUST00000027675.14 UniProtKB/Swiss-Prot
  ENSMUST00000133792.8 UniProtKB/TrEMBL
  ENSMUST00000137782.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CD300_family_receptors UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18703 UniProtKB/Swiss-Prot
MGD MGI:103080 ENTREZGENE
NCBI Gene 18703 ENTREZGENE
PANTHER CMRF35-LIKE MOLECULE 8 UniProtKB/TrEMBL
  POLYMERIC IMMUNOGLOBULIN RECEPTOR UniProtKB/TrEMBL
  POLYMERIC-IMMUNOGLOBULIN RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN CD300H UniProtKB/Swiss-Prot
Pfam V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pigr PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGv UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YVM4_MOUSE UniProtKB/TrEMBL
  D3Z2D3_MOUSE UniProtKB/TrEMBL
  O70570 ENTREZGENE, UniProtKB/Swiss-Prot
  Q8R544_MOUSE UniProtKB/TrEMBL