PIGR (polymeric immunoglobulin receptor) - Rat Genome Database

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Pathways
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Gene: PIGR (polymeric immunoglobulin receptor) Pan paniscus
Analyze
Symbol: PIGR
Name: polymeric immunoglobulin receptor
RGD ID: 11835469
Description: ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (inferred); epidermal growth factor receptor signaling pathway (inferred); Fc receptor signaling pathway (inferred); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 7 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN recycling endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2142,427,196 - 42,446,081 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1142,393,143 - 42,411,960 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01182,532,773 - 182,550,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,811,152 - 186,829,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,811,152 - 186,829,793 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PIGR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2142,427,196 - 42,446,081 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1142,393,143 - 42,411,960 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01182,532,773 - 182,550,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,811,152 - 186,829,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,811,152 - 186,829,793 (-)Ensemblpanpan1.1panPan2
PIGR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,928,522 - 206,946,466 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,928,522 - 206,946,466 (-)EnsemblGRCh38hg38GRCh38
GRCh371207,101,867 - 207,119,811 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361205,168,495 - 205,186,430 (-)NCBINCBI36Build 36hg18NCBI36
Build 341203,490,266 - 203,508,202NCBI
Celera1180,353,371 - 180,371,315 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,799,244 - 177,817,184 (-)NCBIHuRef
CHM1_11208,374,492 - 208,392,432 (-)NCBICHM1_1
T2T-CHM13v2.01206,193,722 - 206,211,683 (-)NCBIT2T-CHM13v2.0
Pigr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,754,421 - 130,779,986 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1130,754,421 - 130,779,986 (+)EnsemblGRCm39 Ensembl
GRCm381130,826,684 - 130,852,249 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,826,684 - 130,852,249 (+)EnsemblGRCm38mm10GRCm38
MGSCv371132,723,261 - 132,748,826 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,654,297 - 132,679,517 (+)NCBIMGSCv36mm8
Celera1133,449,991 - 133,475,626 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.89NCBI
Pigr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81344,851,001 - 44,879,143 (+)NCBIGRCr8
mRatBN7.21342,298,905 - 42,326,877 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1342,298,914 - 42,326,875 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1344,905,434 - 44,933,393 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01346,193,574 - 46,221,520 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01343,448,444 - 43,476,614 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01347,564,176 - 47,592,093 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1347,572,219 - 47,591,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01352,652,970 - 52,680,757 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41343,785,845 - 43,819,331 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11343,799,887 - 43,817,079 (+)NCBI
Celera1342,648,461 - 42,676,340 (+)NCBICelera
Cytogenetic Map13q13NCBI
Pigr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540642,453,080 - 42,474,694 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540642,456,450 - 42,474,489 (-)NCBIChiLan1.0ChiLan1.0
PIGR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,070,407 - 6,087,605 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl76,070,407 - 6,087,605 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha75,633,951 - 5,651,108 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.075,759,271 - 5,776,498 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl75,759,271 - 5,776,498 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.175,693,647 - 5,710,805 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.075,794,690 - 5,811,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.075,834,667 - 5,851,875 (-)NCBIUU_Cfam_GSD_1.0
Pigr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,450,662 - 68,461,563 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365575,690,944 - 5,700,738 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365575,690,895 - 5,701,822 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl967,553,099 - 67,574,668 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1967,553,094 - 67,574,698 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2973,889,670 - 73,897,726 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,409,723 - 22,427,894 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2522,409,999 - 22,427,949 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,079,829 - 23,092,158 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248074,545,481 - 4,563,357 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248074,545,508 - 4,562,976 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003822909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000048421   ⟹   ENSPPAP00000025593
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1186,811,152 - 186,829,793 (-)Ensembl
RefSeq Acc Id: XM_003822909   ⟹   XP_003822957
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2142,427,196 - 42,446,081 (+)NCBI
NHGRI_mPanPan1142,393,143 - 42,411,960 (+)NCBI
Mhudiblu_PPA_v01182,532,773 - 182,550,662 (-)NCBI
PanPan1.11186,811,152 - 186,829,036 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003822957 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000025593
  ENSPPAP00000025593.1
Reference Protein Sequences
RefSeq Acc Id: XP_003822957   ⟸   XM_003822909
- UniProtKB: A0A2R9B7M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000025593   ⟸   ENSPPAT00000048421
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035924 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048421.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
KEGG Report pps:100987708 UniProtKB/TrEMBL
NCBI Gene PIGR ENTREZGENE
PANTHER CMRF35-LIKE MOLECULE 8 UniProtKB/TrEMBL
  POLYMERIC-IMMUNOGLOBULIN RECEPTOR UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9B7M7 ENTREZGENE, UniProtKB/TrEMBL