HSPA8P18 (heat shock protein family A (Hsp70) member 8 pseudogene 18) - Rat Genome Database

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Gene: HSPA8P18 (heat shock protein family A (Hsp70) member 8 pseudogene 18) Homo sapiens
Analyze
Symbol: HSPA8P18
Name: heat shock protein family A (Hsp70) member 8 pseudogene 18
RGD ID: 10402030
HGNC Page HGNC:44933
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HSPA8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38319,940,181 - 19,943,373 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl319,940,269 - 19,943,310 (-)EnsemblGRCh38hg38GRCh38
GRCh37319,981,673 - 19,984,865 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36319,956,849 - 19,959,824 (-)NCBINCBI36Build 36hg18NCBI36
Celera319,922,305 - 19,925,325 (-)NCBICelera
Cytogenetic Map3p24.3NCBI
HuRef319,921,794 - 19,923,005 (-)NCBIHuRef
CHM1_1319,934,030 - 19,935,241 (-)NCBICHM1_1
T2T-CHM13v2.0319,944,316 - 19,947,507 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:89
Interacting mature miRNAs:90
Transcripts:ENST00000439846
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 7 8 1 8 4 20 1 8
Below cutoff 1052 905 884 187 643 97 1850 612 2144 135 901 729 92 515 1175 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000439846
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl319,940,269 - 19,943,310 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HSPA8P18 COSMIC
Ensembl Genes ENSG00000232953 Ensembl
GTEx ENSG00000232953 GTEx
HGNC ID HGNC:44933 ENTREZGENE
Human Proteome Map HSPA8P18 Human Proteome Map
NCBI Gene HSPA8P18 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 HSPA8P18  heat shock protein family A (Hsp70) member 8 pseudogene 18    heat shock 70kDa protein 8 pseudogene 18  Symbol and/or name change 5135510 APPROVED